TCONS_00014406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014406
Unique NameTCONS_00014406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1080

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014406 ID=TCONS_00014406|Name=TCONS_00014406|organism=Clytia hemisphaerica|type=transcript|length=1080bp
TTGGCATCAGTGACACAATGAAACGAGTCATGCATCTCGAAACTGAAATC
ATCCACAAAGAGGAAACGTTTTTGAAGGAAGAACCTCAAAAGTTGGATAC
ATTAATCGAACGATGTAAAACACTATCAGGAACTCTGCAAACACTTCAAA
AGTAAGATTTGTAGGCCTTGCTAACCTTTTTATAATGTGACAGTGACAGA
CAAATTCTTCTCTGGTTTATAATTTCTCATGTACCCTTTGTCTCCAATTT
GTGAATTACAATTGTAAAGATATTTCTAATGTTGTGTAACATTTATTACA
AGATAACTCGGTGTAATATAAATTCTAATTCTGTATAAAATTCTAAATTT
AGGTTAGCAAAGATGCAAAGTGAAGTTGCTACGTCACGAAAACCATCTTC
CGATCAAAATCGACAACGTAATCCGACACATTCGTCACCAGACTACCAAG
AAATTGATGATGTCAATCATaataaTATGCAAAGAGGAGTGAGATTTCAT
CGTTGAAGATTCAACCATAACTGTATATAATCAAATGAAATATTATGTGA
AAAAAATACACCGAATTCCAAATACTATCAGAACAGATAGGTCAGAGAAA
ATAGGTTTTGCAATAATAGGCAAAAAACAtgttgaagaaaatctttttga
attattttttaattcttctATTGTTAATCGATATGTTAAATTTGCAAATC
ACAACTATTCTCGATATGGAATTACTTTGGCAAATCTTGTTACTTATGTA
TTATTACGATATTACTTTGAtagaatatttttgtaaattttagcgcaaaa
aaacatgtatagaaTTTTATTCCAGTTGTAATATAAAAACTgcacaattt
tttgtttatgcaaattaatttttttcacttgacgaaaataaaatcttaaa
attttattaagCACAAAACTTAGATCATTGCTTGTTCACTCTgagaattt
taaatttattttgaaatcaaaaacttcgtccttatttatatttttctatc
tttttttattttgtatgaatttaaatatttttctgtgtATTTTTTAGTTT
GATGTTTTATAAATATTTCACATTAGAAAG
Run BLAST on NCBI

transcript from alignment at sc0000187:79289..82093-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014406 ID=TCONS_00014406|Name=TCONS_00014406|organism=Clytia hemisphaerica|type=transcript|length=2805bp|location=Sequence derived from alignment at sc0000187:79289..82093- (Clytia hemisphaerica)
TTGGCATCAGTGACACAATGAAACGAGTCATGCATCTCGAAACTGAAATC
ATCCACAAAGAGGAAACGTAAGTCTTTTACTGACCAGCAGATTTTTATGC
CACTTTTAATTATATATTCATGGTATTAAAAGATCATTATAAAATGACAT
AAAAATCTGTTTTCTTATTCAAATTTTGTGTTCCTCTTGGCTACGCTACT
GTAAACCTTTTTCGGGAGTTATATGCATCGGAAACAAAAGCAGGCAGTGT
TGTTGCGTGATTCTCAGTTAAAATATTTGTTTTTTCTTTCCTCATAACAT
CATTAGAAAAGCCTGCAAAAGCTCAACTTAAATTCAAAATTTGAAAAAAT
CTATTAGATTAAAGTCTATTCACGATAAGTGTGCACTCTTTTTTCTTTTA
CTTATAACTTTTGAAGGAATTCTTCAATCTTTATAAATTTGGTATCATTG
GAAAGAAATTAGTGAGTGGGACAATTTGAAATAAAAAAAACTTTAAAAAT
ATTATAAAAATGAAGATGAAAATGAAGAAGAAAAAAATGAAGATCTTGTA
GAAAGGTGCTATAACTTTCATTTTCACTGGAGAGATTCCTTGATCTTAGG
AGATCATCACTGTGAAAAAATTTCATTAAAATATTTATTCAATATAAAGT
TTTATAGCCCTGCAATACAACTGTCAATCGTTTTTGAGAAAACTGATCGG
ATAATTGATGTCACGTGGCCGTTTAATATTTCCCCATAGTGACCAGTTAT
GAAATTGACTTCTTTAGAATGTTAATTTTTACGATGTAGAACAATAGAAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGTG
AATAGACTTTAATATATTTCTTAACTCTATTATTTTACAGGTTTTTGAAG
GAAGAACCTCAAAAGTTGGATACATTAATCGAACGATGTAAAACACTATC
AGGAACTCTGCAAACACTTCAAAAGTAAGATTTGTAGGCCTTGCTAACCT
TTTTATAATGTGACAGTGACAGACAAATTCTTCTCTGGTTTATAATTTCT
CATGTACCCTTTGTCTCCAATTTGTGAATTACAATTGTAAAGATATTTCT
AATGTTGTGTAACATTTATTACAAGATAACTCGGTGTAATATAAATTCTA
ATTCTGTATAAAATTCTAAATTTAGGTTAGCAAAGATGCAAAGTGAAGTT
GCTACGTCACGAAAACCATCTTCCGATCAAAATCGACAACGTAATCCGAC
ACATTCGTCACCAGACTACCAAGAAATTGATGATGTCAATCATGTAAGTT
TTTGAGCGGACGCGAAATATCACATCAAATTCAACCTACAAAATTAAAAA
TTGAATTAATTAATACCAATACGTATTTTTAAACCGGGGGGGGGGTACTC
TGGCAAAAATAGGGGCAGAGTATAAGCGTAAGGGTTTGTATTTGCGTTTC
TAAAAACAAAAAGTCAGGCTTTGTCGGCTTTGCGAAGTATTTTTTGCACC
ACACTCTAAGCAAAATTCTTTTTTAAGTATTTTTACCGTGAAACATGAAC
ATATTATTAAAATTAATAATAAATATATTTTTTCTTCATTTTCAGAATAA
TATGCAAAGAGGAGTGAGATTTCATCGTTGAAGATTCAACCATAACTGTA
TATAATCAAATGAAATATTATGTGAAAAAAATACACCGAATTCCAAATAC
TATCAGAACAGATAGGTCAGAGAAAATAGGTTTTGCAATAATAGGCAAAA
AACATGTTGAAGAAAATCTTTTTGAATTATTTTTTAATTCTTCTATTGTT
AATCGATATGTTAAATTTGCAAATCACAACTATTCTCGATATGGAATTAC
TTTGGCAAATCTTGTTACTTATGTATTATTACGATATTACTTTGATAGAA
TATTTTTGTAAATTTTAGCGCAAAAAAACATGTATAGAATTTTATTCCAG
TTGTAATATAAAAACTGCACAATTTTTTGTTTATGCAAATTAATTTTTTT
CACTTGACGAAAATAAAATCTTAAAATTTTATTAAGCACAAAACTTAGAT
CATTGCTTGTTCACTCTGAGAATTTTAAATTTATTTTGAAATCAAAAACT
TCGTCCTTATTTATATTTTTCTATCTTTTTTTATTTTGTATGAATTTAAA
TATTTTTCTGTGTATTTTTTAGTTTGATGTTTTATAAATATTTCACATTA
GAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008059XLOC_008059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014406-exon-sc0000187-1575043694:82027..82093TCONS_00014406-exon-sc0000187-1575043694:82027..82093Clytia hemisphaericaexon
TCONS_00014406-exon-sc0000187-1575043694:80201..80603TCONS_00014406-exon-sc0000187-1575043694:80201..80603Clytia hemisphaericaexon
TCONS_00014406-exon-sc0000187-1575043694:79289..79898TCONS_00014406-exon-sc0000187-1575043694:79289..79898Clytia hemisphaericaexon
TCONS_00014406-exon-sc0000187-1510915933:82027..82093TCONS_00014406-exon-sc0000187-1510915933:82027..82093Clytia hemisphaericaexon
TCONS_00014406-exon-sc0000187-1510915933:80201..80603TCONS_00014406-exon-sc0000187-1510915933:80201..80603Clytia hemisphaericaexon
TCONS_00014406-exon-sc0000187-1510915933:79289..79898TCONS_00014406-exon-sc0000187-1510915933:79289..79898Clytia hemisphaericaexon
TCONS_00014406-exon-sc0000187-1491911889:82027..82093TCONS_00014406-exon-sc0000187-1491911889:82027..82093Clytia hemisphaericaexon
TCONS_00014406-exon-sc0000187-1491911889:80201..80603TCONS_00014406-exon-sc0000187-1491911889:80201..80603Clytia hemisphaericaexon
TCONS_00014406-exon-sc0000187-1491911889:79289..79898TCONS_00014406-exon-sc0000187-1491911889:79289..79898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000187supercontigsc0000187:79289..82093 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.178412	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top