TCONS_00014344 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014344
Unique NameTCONS_00014344
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014344 ID=TCONS_00014344|Name=TCONS_00014344|organism=Clytia hemisphaerica|type=transcript|length=554bp
AAACAGGCTACTTTAATGTTGATGTTGCCGAAACATAATAATTTTTGCTG
TCCTATTGAAAACTTAATAGATTCTCCTATAAAGCTTGGTTCCTGTCATC
TAATCAACCCAGATGGTAtctaggctggtcttcgaaataaaaaatcttct
tggGAATAAAATGACAGTATGTATGTTATAGTGAATCATGGATTTCTATA
AATCAATCCAAAGGCGCCCTCCTCAAGGTCTATTGTGGCCTAAAGATTGG
GTTTACTAAATGCTAGTTGAGTCTGAAGTGATCCTTTGattgtcttttat
gttttaattcatattttgagataatATTACTACTTCTTCTTGCAGCCCCT
TTTTAGCTttagttgttttcattttatttattaGGTATCTTTAatagcta
aaaaaataagaaccttTTAACCGGACAAAGTGAAAAACTTAGCTTCGCGG
AATGACCGGTACTGTAGGAACTACAAATAGACCTTAGATATAATAGAACT
ATCGGTAATAAACCTTTGCTAGGTGCTATACTATCTTGATTCCAGCGGTG
AAAC
Run BLAST on NCBI

transcript from alignment at sc0000185:199777..200330

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014344 ID=TCONS_00014344|Name=TCONS_00014344|organism=Clytia hemisphaerica|type=transcript|length=554bp|location=Sequence derived from alignment at sc0000185:199777..200330 (Clytia hemisphaerica)
GTTTCACCGCTGGAATCAAGATAGTATAGCACCTAGCAAAGGTTTATTAC
CGATAGTTCTATTATATCTAAGGTCTATTTGTAGTTCCTACAGTACCGGT
CATTCCGCGAAGCTAAGTTTTTCACTTTGTCCGGTTAAaaggttcttatt
tttttagctatTAAAGATACCtaataaataaaatgaaaacaactaaAGCT
AAAAAGGGGCTGCAAGAAGAAGTAGTAATattatctcaaaatatgaatta
aaacataaaagacaatCAAAGGATCACTTCAGACTCAACTAGCATTTAGT
AAACCCAATCTTTAGGCCACAATAGACCTTGAGGAGGGCGCCTTTGGATT
GATTTATAGAAATCCATGATTCACTATAACATACATACTGTCATTTTATT
CccaagaagattttttatttcgaagaccagcctagaTACCATCTGGGTTG
ATTAGATGACAGGAACCAAGCTTTATAGGAGAATCTATTAAGTTTTCAAT
AGGACAGCAAAAATTATTATGTTTCGGCAACATCAACATTAAAGTAGCCT
GTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008024XLOC_008024Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014344-exon-sc0000185-1491911889:199777..200330TCONS_00014344-exon-sc0000185-1491911889:199777..200330Clytia hemisphaericaexon
TCONS_00014344-exon-sc0000185-1510915933:199777..200330TCONS_00014344-exon-sc0000185-1510915933:199777..200330Clytia hemisphaericaexon
TCONS_00014344-exon-sc0000185-1575043694:199777..200330TCONS_00014344-exon-sc0000185-1575043694:199777..200330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000185supercontigsc0000185:199777..200330 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.113912	0.832065	0.547924	0.396628	0.371318	0.0866563	0.322013	0.104185	0.273948	0.478742	0.497178	0.291963	0.313321	0.0771971	0.237374	0.327945	0.800731	0.894832	0.290978	0	0.321585	0.441633	1.28098	0.705029	0.300971	0.228276	0.232577
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top