TCONS_00014205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014205
Unique NameTCONS_00014205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014205 ID=TCONS_00014205|Name=TCONS_00014205|organism=Clytia hemisphaerica|type=transcript|length=1669bp
TCGCAAGAAagttaaaatatatttcaaatataagtcAGATGAATATGGAG
ATATTATTAATCAATTCAAttggaaaaatagaaatttaaatTCCATGAAT
GATAAACctttttgaaagattgttttCCAAATTCATTCAGTCGTATCAGC
CGATCTCGATAGAGCATACATTGTTCTATTTATTGTTTGATCTTTTAAAA
AACTTCGATAAGAAAGATAGTAATGCATCATTGATGCTGTCGTAAAGCTC
CTTCTTGGACTTGGTGATGAGTCGCTTGTCCTTGTATTGGATAAGCTGTT
TCTCCTTCTGCGGGATGAGCCGCTTGTTCTTGTATTGGCGTGTCAAGCAC
CCATAATGGCGGACAGGTATCCAAATCTGGACATACCACATGTCTAGGGA
TAGTGGTCAAATGATATTTCtgactttttttgttttgccaaTTAAAAGTA
CAGTGCCCTTCAACAAAGACATTCATTTCCATAAGTTTTAAAATGAGTTT
ATACATGTCACATGAGCATTCCAACTCGTTCAATTCCAAAAACACTTNCA
ACCACCACAAAATAACGCCGCTGGAAACACTCTAACCGATGCCATTCAAT
TGATCAGTGGTCCGCCCTCGCCCAATATCCCACGTGCCAACGAAAACATT
AAGCTGAAGTCAGTCGTGATGAACGCCCAAACAACAAATTTACGCCCCGA
AAGCGCCCCTCCGAACGAAATGAACATGGAAAGTAGAAATCATTTCAAGA
GGGCGTTGAATGGCGGTAGTGTTACAAATTCGAACACTTCTTTAAACGAT
TTGGATAAGAAAGACCAAAGTCAATCGAGACAAGATCAAAATCGGAGAGG
CTCATTAACAGGGCGTTTCTTTAGCGCTTTTGAATCTTAGAAACACATAC
ATAATAAAGTTCTTGAAATAAACTTCTTCGGTAGCCGATATAAACACTAA
TTTTGTTTGGAACACGTGGTATTTCAGGGACACGAGGAACTGGTATGCCG
ATGGCTCCCAGAGGAGGGCAGGAGCACTCAATCTGAAATTATTCctttaa
aatcggacccttacagtgctgAGAAAATTTACCGAATTTGAGTAAATTTC
CCGAGAAGCTTTGTTATTCTCACTttttacagtgcactttctctcatttt
tcttacacccttacagtgcaatttcTCTCATTTCGACCCTCACAGTGAAC
TTTCTCTCATTTCGACCCTCACAGTGAACTTTAGGAAGCCGGAAAAACGT
ACCCTTAAAGGCGCACCTACGGTAGGTCGCTTAGCTTGAGTCCCCCTCCC
CCACCGGGCGATGgggcaaaatattgaaagacTATCGATCACTGCCACAG
ATTAACAAACTTGTTCAAAGTCGTAAAGATAAAATCACGTCACGTCGCTT
TGAATTTATGAAGCTTGGAGTATtgaaagatttaaatttttacgGATTAA
ATACGGGCTTAACTATCAGCATTAGATGTTATGATGTTGTGTCCTGGCTG
ACGTGAATATTGTACGATATTATTAAAgtaaatattattttgaattttaa
atttgtaGCTGATGAATTTATGACTTATTTATTTTACAAAGTGAACAAAA
AGGGGTATTAGTTTCGtttagaaatttgaaaacaaaatatgaatcaaaat
aaaaaaacgtgtataaaca
Run BLAST on NCBI

transcript from alignment at sc0000183:292772..304512+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014205 ID=TCONS_00014205|Name=TCONS_00014205|organism=Clytia hemisphaerica|type=transcript|length=11741bp|location=Sequence derived from alignment at sc0000183:292772..304512+ (Clytia hemisphaerica)
TCGCAAGAAagttaaaatatatttcaaatataagtcAGATGAATATGGAG
ATATTATTAATCAATTCAAttggaaaaatagaaatttaaatTCCATGAAT
GATAAACctttttgaaagattgttttCCAAATTCATTCAGTCGTATCAGC
CGATCTCGATAGAGCATACATTGTTCTATTTATTGTTTGATCTTTTAAAA
AACTTCGATAAGAAAGATAGTAATGCATCATTGATGCTGTCGTAAAGCTC
CTTCTTGGACTTGGTGATGAGTCGCTTGTCCTTGTATTGGATAAGCTGTT
TCTCCTTCTGCGGGATGAGCCGCTTGTTCTTGTATTGGCGTGTCAAGCAC
CCATAATGGCGGACAGGTATCCAAATCTGGACATACCACATGTCTAGGGA
TAGTGGTCAAATGATATTTCtgactttttttgttttgccaaTTAAAAGTA
CAGTGCCCTTCAACAAAGACATTCATTTCCATAAGTTTTAAAATGAGTTT
ATACATGTCACATGAGCATTCCAACTCGTTCAATTCCAAAAACACTTNCA
ACCACCACAAAATAACGCCGCTGGAAACACTCTAACCGGTAAGTCTTTGT
TCGGAATTAATTCGGAATATTTCAGAAATAGTTCATATAACTCCTATATT
GAGGAGTTGTGACATTCAGGGTAGGTAGAGGTGTagtttataaaataaag
aagatCTTTTTTCAAGAGTACGGATGCAAGACAAACTTGAAAAGGTGGAA
GGAGTTTCTTTTTAAGGAAACGCAAGAAGTACATTTAGTACTAACAAGAA
AGTCGCAAGAAagttaaaatatatttcaaatataagATGGAGATATTATt
aatcaattcaatttgaaaaatagaaatttaaatTCCATGAATGATAAACC
TTTTTGAGAGATTGTTTTCCAAATTCATTCAGTCGTATCAGCCGATCTCG
ATAGAGCATATATGTATTGTTCTATTTATTGTTGGATCTTTTAAAAAACT
TCGATAAGAAAGATAGTAATGCATCATTGATGCTGTCGTAAAGCTCCTTC
TTGGACTTGGTGATGAGTCGCTTGTCCTTGTATTGGATAAGCTGTTTCTC
CTTCTGCGGGATGAGCCGCTTGTTCTTGTATTGGCGTGTCAAGCACCCAT
AATGGCGGACAGGTATCCAAATCTGGACATACCACATGTCTAGGGATAGT
GGTCAAATGATATTTCtgactttttttgttttgccaaTTAAAAGTACAGT
GCCCTTCAACAAAGACATTCATTTCCATAAGTTTTAAAATGAGTTTATAC
ATGTCACATGAGCATTCCAACTCGTTCAATTCCAAAAACACTTCCTTTAA
ACTGAACAACCCATCAAAAACATTGATAGATAAAGAGACTAAGTTATTGT
TCTCCAAATGAACGACTTCTAAGTTCCTGGCATTCTGAGCAGTTCCTGAT
AAGAAGTGCAACAGTTTATTATGTGTCAAAACAATGGTTTTTAAACGTGG
TAGTTGGTTGTACATCGATTCAGGAATACATCTGATAAAATTATTGCTTA
GATCCAGAACCTCTAAGTTACGTAAACCAAACAGTAGGAAATCGTTGATA
TATGTGATATGGTTGTTAGATAAAGACAGTCTCTTTAAGCTGACCAAATC
CGAGAAATGAGTGATCTCTGAGGATAAGATCAACCGGTTGCCATGGAGAT
GCAATTCTTCTAAGAGATAGAGACCGTAGAAAATACCTTTGGGTAAAGTC
TCCAGTTTTGTGTTCAAGATTTTTAGCTGAATCAAGTATCGCATTTTACG
AAAGGATTTGGCTTCAAGACGCCGGAGACATTCCTCGTTGCCACCTTTCC
CTTTAAAGCATCCTCCGTCTAACACAACATGTGTGACGCAACCAGGTAAA
TCAGGGAATTCGCTGACGTCATTACAATGTGCCGTCGTGTCGTGACACGT
GCACCCGACAGGACAATCTGACGGTAGAATACATAACAGGCGTTGATCCC
GTGCacgtttgatgacgtcattggcgTCTGTAACATGATGTAATGATACA
GACAAAAATACCAGATAAAATAAAACCCACATGGTAGCTTCTTTAATTTC
AGTACAATTTTTTTAACAGGTTTTCTCACCTACAGCACAACACACACATA
AAATCCAGGCGTTGTAATTCATAAGAACCGttcagtttttttatcaaaat
gtaaCACCATATATAAGAATGACCACATATTATGAATTGCGGGTTTTAAG
AAATGACCTGGTCCAGAATGACCAGAAAAAATATACGTACATAATGAATT
ATGAGTAAGGGTCAAACTAGATAAATCTTCTAACCAATAAAACTGCCAGG
AGGAGGCTTTTGGATGTTAGACCACGCTTATGAGAAACTCAAACATTATT
GAATATTGTTTGAATAAAGTGCTTGATATGACGACactaaaaacaagttt
tattaGCTGTTGATTATGGAATATGAATTTGAATAGCGATTTTAAAGGAG
TTAGTTCATTTTCGGTGGTAAAATGAAAGGGTATGATTTTACATTGTTTT
GTGGTTGAATTTTGAGACCATCATTTTTCATAACCAAAATCACGTGTTTA
AAAACATTGGTTGGCCAAAGCTAAACGTCCTTTGTCTGAAAGTTGAAATT
TATAGGACGAACAGAATAACCATTTGTCTCAAACTAAACAGAAAGAGAAC
AACGTGATTGGTGGGTGATTTATCCATCAacaataatacaataatgaccg
gttagtgagggctgtactgagaaatattgtccgaggtcaagtaacgaccg
agcttgcgaggttgttgcgttgaacGAGGGCNcggttagtgagggctgta
ctgagaaatattgtccgaggtcaagtaacgaccgagcttgcgaggttgtt
gcgttgaacgagggcaatattttcagtacagcccgaaaaaagccttgatt
gatttttagcgctttatccagaaaaaaaagcgaaataaagcgaaaaaaca
agcgaagagagataaaaaattgttataatttctgacgtcagaaataaaaa
aggagagaaatgatgtcaacgcatttttttttttttttcaacgcATAAGA
TAAATCACAAATTTATTTGGATATACAtataatagaaatcaaatatattt
taagaaACTGAAACCCTGCAAAGACCAGTGTGAAAAACTNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNCAAGAAGAATAAGAGTACGTTGATACAAAAG
AGACCAGCTTACAAGAAAAAGAGGGTAAGCTTTACGGAGCGGTCACTTTG
TATTGAGAGAGAATCTAACAATCAATTCTCTGATGATTTACCGATAAAAG
CAGATCTTACAGCAGCGTCCAATAgtgatgatgaaaatgaaatccaaCCT
CTGAAATCCGGCGTGGTTTTCCGTCGTTAcgatgatgtcaacgcattgtt
cattttcctttgaaaaagtgacgtcacaataaattttcctaacgacgggc
aactctggccAGTGTAGACCCGTCGTCAtgcaaaaagaaccaattgcatt
gcgcaaaaagccatgtagcccgcttcgaaaaagtaaccggttaacaagaC
GCAATATTAAACTCTAATACAGTGTGTACTATCAGTGTTAATATAAACAA
CTATTTACCAGATACTTGctttttagattatttttttgcTCCTGGATTTG
GAACCTTgctctttttatctttttgaatttactaaagtttttttgcaatg
attaaattttaaattaaaacgTTACAATATTTAAATTGCTTAAAGTACGT
AGagctagaaaataaaatttaaaataaaaaaaaacaaaaaaaattggaat
taCGACACAAATAAATATAGTgtaaaaaactttgcattttttgcagtgta
actttgtaacgtcagaatTTTTTATGACGCATTGTTTTCACTGaacttta
tataccctggaccaagtttctcaatcccggccaagcgaaatctttgatcg
gagtttttaaaaagtggtaccctaatcctaatggcggcactattCAATAG
CAATGTAAGTGCATCGAGAGCGCGAGATCTACTTTCCcccgaaaactttt
gatgacgtagcgccgttagacgttaattttcaacactgcaatggcttctt
tacgggtacaatttcaaaaaaacttcgatcaaagatggcggatttagctt
ggtccagggatatataaaggcagtgacgtaggaagcattttcatattgag
ggggctgaagtttagtgacaccacgagggccaaccatggtttggcccgag
gggggaaatttgaaaatttgagctctagattgcttgaaaatgcactcaat
tgtgacaattatgacaaattaaaaaagaaaaactttgcattttgcaaaat
aaccatgtcccttgccccccccctgactgtaaaggtcagtgattgttttg
agaagttctcCCTCTGAAAAGCTCTTCAATTCAGGTTTTGGTTGTTGATA
AACAAATCAACAATACTCAGCATAAACTCGAATACAGTGTGTCCCATAAT
TATTACTTTCTGATAAATCATATAAATCCTCGGTATACCAGATTCGAAAT
TTCTGATTTGCTGAAACACCAACAGGAGAATCAGGACGTTGAATGAGTTC
ATCTGCATCTCGATCTGCTCCTTCCATTCTAACCACTGTCCCAGTATGTG
taaccgttggaaagataatttgatTCAATTCGTTAGTAGTAACAACGTGG
ATATCATTGACTTGATAGTTGCCAAACGTGCAACCCCATTTGGAGTATAA
ATGATTAACGCTACATACAGTACCCCCTGACACATGCACCAGtttaagat
atttgattttTCCAGTAAAAGGAAGGTTGAAAGTTGCAAAACCGCTATTC
TTTGGTGTGTAGCAGATTGGTGTTGGGGTTAGTGGCGTCAGCTCcgctaa
aatgataaaaatttgataaagtATTGGTATTGACATTTCTTTTTCGCACT
CTTGTTATCTAGACGACCATACTCTGTTTTATATACTAGGTATATAAAGT
GGGTATATGAAGTGGTGATAAGAAGGAGAAATAATACATATTGTTATATA
CGAATTAGAAAATAAGAGTAGTTCTTACATTTGTATATaacatcttcatt
tttgttatCTTTGTATTCTCCTGGTAATGGTCTACAAGAATCGTCCACAC
AGCTACATCTACCATCTTGATACAAAGCATTCATGCATTTGTTTTTCCCA
CAATGCAAAGTACATTGAATAGGTGAAGTCTTTTCCAAAGTGAATTTCTT
GGTACAATGACTTGCTCCGTTAGCATTGGACGCTTTGTAAAAAGAATTTT
CTATGACATTGATGAATTCGGCTATTATAAGCAGCCTGAAGATTGAATAC
ATTTTATTTATCGATTGTGAACTCTTAAATAAAGCATCAAAGATGTACTC
AGGCTTGGATAGAAGTTctatattattttcaaaatatgaccACATATCCC
TCGTAAAATACTTTCTAGCTCGAATCTATCCGTAATACGAACAAAATTCA
TTGAGCCTATCGAACTCGAATTAGCGGGATTTAACTGTAAGTTCATACCT
agtaagggggggggggttcacttttacggtatgacggtattgggcctttt
tacccccggtaaaacggtattacgagaaaaaaacgacgggattacggtat
ttcattttttaccggtatcggtaaattgcctgtttttttgtcggtatttc
gatatttttataaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTC
ATTTtttaccggtatcggtaaattgcctgtttttttgtcggtacttcgat
atttttatcaataaaaaacggtatttcggtataaaactatttacttttca
gtttcttcatgagtttcatgcagaaaaatttttaaaaaagataagtctat
tctgctattttaaccagtaaaattttcttgctcacttcgctcgcacaatc
ttggatgtcATATTGACTTATTGTCctggtgaggttattcaaaataacca
aaactttacgatatctaaacaaatattttcgttatttttctgcggtcaca
tttttttgacaacttttgtgatgcaaatactgcatccaacgaatgagtct
agataaaaaattttccgtcagcactaaatgatatggtcgtctctccgtat
tcacttatattgctactacaatacaatacactaatactgcagtaacttag
agacagtaaaggcgTTTTTACTCtttcaataattagtaaaagtaggtagt
tctaaaatcatcttgtgcagcatcgaacgattaaaaaataattcacatca
tgatgcacatgatgcgttttcaggcaatctaggcattctaaatttttttt
tctcttagacgaaactcttggaacgccgcaccgggtacggcaggtacgtc
gctcgccggtatcttacgggtctgcgaggaagaaattattgggggaaagg
cttaattttgcatttgcctcccgtagCAAGCAAGTAACTAgtattgcttt
atgaaagcttgaatagctgtaaaagaggccttaaaaagtcgacgatatcg
agaataaggtcacaaaactagcaagaaactttatatattggcgaaaatgt
ttggtataagaatatgtcaatctgtttaaaagagaccataaaaaggttaa
atttagcccaataaggtcacaatcgtttaaccaaagatgtaaaagcaaaa
ttggtgcgtgaacgtgaaaatgtttttttttcgcgcgtgaatacgtgaat
tggcaaacaTTTGTGcatgaatacctgaattgagggttgactggggggcc
tcgtagagtacaagacttgtttgtacagtttctaatttgttactacacaa
tacAATAGATtcgataactgaaaattcattattttcgaaaaaaaacataa
atataatatcggtatcggtattaggcttccttcaccgacggtattacggt
atttaagacccctgaaaccccccccccagtAAGTTTACACTACATAATCC
CTAAACAGAATTGAATAACATTTATTTGACATAAATACTTCACTAAACTT
AATAATACGCGAGTGGGAATCTCGACAGACTTTCAAATAACCACAACCAC
AAAAAACAGGTCAATCATTAAACTAAAGAATCAGTTTCAGTTTCAGATAC
CTTCTGGTTGAATTCCTCAATGGTTAAAGCGAACTGATTCAAACATAATT
TCAttgtaaatgaaaaaaaagaaattcgcCTTTCAAATATCTTGAATATA
ATATTTCGCCTTTCAAATATCTTGAATATAATATTTCATGAAAAGTCTAG
AGAAAGCGTACCTACTTCGcttctattgtttcattttcaaaacaaagtta
aaacgcatgcgtatatttttattttataaatgaGTAGTGAAGGCATAGTC
GGCatagtaatatttttattttataaactgTTAGTCGTTATTATACGCAA
AacacaaagaggaatgaatacgtAAGGTGCAGTGACTAAAAGTCGGGGTT
ATGGATGGTGAAATTCGTCGTTCTTTTTTAATGTTGCGAAGTAGGCACTT
TCTCCTCCTTGTAAGAAACTTAAATAACCATGCCTTTAAAATTTCCACGT
TGAATCAAAACCGATTCCCTTTCGCTGAATAATATCGATTTGCAAGACTG
TCAAAATCTTCAGCTATTCACGATTATTTTCATTCAACATATATTAGATC
TTTTCTTGGTGTCTGATGACATTATCTCTATGCTCTTAACTTCTTTTTCA
CTTTGAATCGTATAATCTATCATCAAACTTTTGATTTATAATAACCATTT
TATTATTCAGATGCCATTCAATTGATCAGTGGTCCGCCCTCGCCCAATAT
CCCACGTGCCAACGAAAACATTAAGCTGAAGTCAGTCGTGATGAACGCCC
AAACAACAAATTTACGCCCCGAAAGCGCCCCTCCGAACGAAATGAACATG
GAAAGTAGAAATCATTTCAAGAGGGCGTTGAATGGCGGTAGTGTTACAAA
TTCGAACACTTCTTTAAACGATTTGGATAAGAAAGACCAAAGTCAATCGA
GACAAGATCAAAATCGGAGAGGCTCATTAACAGGGCGTTTCTTTAGCGCT
TTTGAATCTTAGAAACACATACATAATAAAGTTCTTGAAATAAACTTCTT
CGGTAGCCGATATAAACACTAATTTTGTTTGGAACACGTGGTATTTCAGG
GACACGAGGAACTGGTATGCCGATGGCTCCCAGAGGAGGGCAGGAGCACT
CAATCTGAAATTATTCctttaaaatcggacccttacagtgctgAGAAAAT
TTACCGAATTTGAGTAAATTTCCCGAGAAGCTTTGTTATTCTCACTtttt
acagtgcactttctctcatttttcttacacccttacagtgcaatttcTCT
CATTTCGACCCTCACAGTGAACTTTCTCTCATTTCGACCCTCACAGTGAA
CTTTAGGAAGCCGGAAAAACGTACCCTTAAAGGCGCACCTACGGTAGGTC
GCTTAGCTTGAGTCCCCCTCCCCCACCGGGCGATGgggcaaaatattgaa
agacTATCGATCACTGCCACAGATTAACAAACTTGTTCAAAGTCGTAAAG
ATAAAATCACGTCACGTCGCTTTGAATTTATGAAGCTTGGAGTATtgaaa
gatttaaatttttacgGATTAAATACGGGCTTAACTATCAGCATTAGATG
TTATGATGTTGTGTCCTGGCTGACGTGAATATTGTACGATATTATTAAAg
taaatattattttgaattttaaatttgtaGCTGATGAATTTATGACTTAT
TTATTTTACAAAGTGAACAAAAAGGGGTATTAGTTTCGtttagaaatttg
aaaacaaaatatgaatcaaaataaaaaaacgtgtataaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007949XLOC_007949Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014205-exon-sc0000183-1491911889:292772..293359TCONS_00014205-exon-sc0000183-1491911889:292772..293359Clytia hemisphaericaexon
TCONS_00014205-exon-sc0000183-1510915933:292772..293359TCONS_00014205-exon-sc0000183-1510915933:292772..293359Clytia hemisphaericaexon
TCONS_00014205-exon-sc0000183-1575043694:292772..293359TCONS_00014205-exon-sc0000183-1575043694:292772..293359Clytia hemisphaericaexon
TCONS_00014205-exon-sc0000183-1491911889:303432..304512TCONS_00014205-exon-sc0000183-1491911889:303432..304512Clytia hemisphaericaexon
TCONS_00014205-exon-sc0000183-1510915933:303432..304512TCONS_00014205-exon-sc0000183-1510915933:303432..304512Clytia hemisphaericaexon
TCONS_00014205-exon-sc0000183-1575043694:303432..304512TCONS_00014205-exon-sc0000183-1575043694:303432..304512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:292772..304512 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.101774	0.0581803	0.0380811	0.0593236	0	0	0	0	0	0	0.31285	0	0	0	0.0520726	0.140929	1.02589	0.153282	0	0	6.41311	5.5188	1.70585	1.56596	3.81863	2.46062	0.0831027	0	0.0856099	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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