TCONS_00014176 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014176
Unique NameTCONS_00014176
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1185

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014176 ID=TCONS_00014176|Name=TCONS_00014176|organism=Clytia hemisphaerica|type=transcript|length=1185bp
CCACTAACGATAATGTTACTTCTTAAAAAGCACCGACAGTTTGGTGATGG
TGAtctatcattttttttattttaacctGGTAGTGTAAATTTGAAATGAG
AGGAAATTATTGTTGACAATTTCagcaatttttgaattaagtTCATCACA
CTTCAAAGAAAGGACGAGATATCCTGGCTATGAATTGGTTAACTATATGT
TTAGTTGCTGTGACGTACGTCATAGTGGCTAAATCGCAAGTATGCATTGA
CTCGAGCAGAAGATGTGTATATTGGTCACGTTACTGTAGAACAAGCACAT
ATGTTGCACTACAATGTAGAAGGACGTGTGGACGGTGCCTTATCCCTCGC
CCAAGACCAGTCGTTCCATCTAGAAGATGTTTCGATATTGACCGTCGTTG
TGTGTACTGGAGGAATCACGGCTATTGTCGAAGATATTATTATCAAAATC
GATGTCAAAAAACTTGTGGTGTATGTAGAGCACTTCCAACGACAAGAGTA
TGCGTGGACAGAGACTCGAGATGTCCTTTTTGGGCAAGACGCTATCAATG
TTTCCTCAATTCAAGATATATGAATCGGAATTGTAAAAAATCTTGTGGAA
AATGTCCTAAACCAAAACCAAAACCAAAGCCAAGGCCAAGAACAACAAAG
ACAACGACAACCACAACAACCACAACCACATCTACGACCACTTCAACTGA
TCCACCACCACCTGTTCCAGAAGTTACAAAACCTCCAACTCCAAGAGTTA
CAACTGATGGAATCCCGCCACCTGTTCCAGAAGTTACAAAACCTCCAACT
CCAAAAGTTAAAACTGATGGAATCCCACCACCTGTTCCAGAAGTGACAAA
ACCTCCAACTCCAAAAGTTACAACTGAAGAATTACCCATCATTCCACCAA
TACCGCCAATACCTCCAATACCACCAATCCCACCAATCCCAGCGAATCCT
ATGAAATGCCGTAAACAGCCCAACGGCAAGCTCGTTTGTAAAGGAACATC
ACGCGTAATTTACAGAGGTGAAAACGATGAAGCGAAAAAGAATTGAACAA
CAAAATACCcaaagaaagtattttaaagATAAACCCATAATTCACAAATT
ATAATTATATACAAATATCCCTTAGCAGAAAATTTGACTAGCACTTcttg
attttcaaagaaatatatttaagatttaaaaaaat
Run BLAST on NCBI

transcript from alignment at sc0000183:28106..34905+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014176 ID=TCONS_00014176|Name=TCONS_00014176|organism=Clytia hemisphaerica|type=transcript|length=6800bp|location=Sequence derived from alignment at sc0000183:28106..34905+ (Clytia hemisphaerica)
CCACTAACGATAATGTTACTTCTTAAAAAGCACCGACAGTTTGGTGATGG
TGAtctatcattttttttattttaacctGGTAGTGTAAATTTGAAATGAG
AGGAAATTATTGTTGACAATTTCagcaatttttgaattaagtTCATCACA
CTTCAAAGAAAGGACGAGATATCCTGGCTATGAATTGGTTAACTATATGT
TTAGTTGCTGTGACGTACGTCATAGTGGCTAAATCGCAAGGTAGGACTCT
TAGACGATTCTTTCGTCCGTTGGATGGAGAGTATTCGCGGAGAAATATAC
ATATGTACGGAGCTTATAGCCGTAATGGGCGGCAGTAGAAGCTTGAAACA
TAGTAAAAACATCCATCACTTCTTACTCCGACCCGGTCTTCCCTTGCTTT
CCGAATTCTTTCCACTTCCTTGACTTAATGGTTTTTATTTCTAAGGCCCT
CAATATGTGATTAAGAGACTGTTTAGTAATCAACGAAAAGACGATTTCAT
CTATATTCCCCCTCTATTGACAATTGGAGCAAAAGAGGTCACGCAACACT
CTCAAATACAATCAAAAGCGACAAGATTTCATTTCTAGATTGAATTTTAA
TAGATGATTAAGGAGTCTTTCttaaacatttttggaaacGTTTTCCGAAT
TTATCGTCAGctttgaaaattgacttttaatGTAActgattttagtgaaa
aagtctCAATTTCAAAAGGCAACTATTTTGACACTAGATCTTTCGTTCCA
CCTACAGTATGCATTGACTCGAGCAGAAGATGTGTATATTGGTCACGTTA
CTGTAGAACAAGCACATATGTTGCACTACAATGTAGAAGGACGTGTGGAC
GGTGCCTTATCCCTCGCCCAAGACCAGTCGGTAAAGTACCTTGGACGCAT
TGGACGAGAACAATCGAAATAGTTGTTTGTACAGGCCCAACTtaccctaa
aaatcaaaaattcaaaatcaatcaCTTTCCTCAATCACTTCTTTGTTCGA
ATTTCTATCCGGTTGAAATTTTACCCTTGTTTCTATTCTTTTCTCACCTT
ACCTTATTTGAATTTGAGTAAATTCATACGTAAAATAACAAAACTCTTTC
AGGGAAAGAAGTCAATTTGAGCAGATTTGAGATATATTTTGGCAAAAAGA
GGCAAATCTTTTACAGTCGAAATTTCTCCTTATCTACTTAACATGGACCC
CCGTCCGATAAAACATCTGTCACGTGCAGAATTAAACAgctataagaaca
tttttgagtCGTTTTAGGGATATTTTTGGGTTTATTTCCTTTATATCCGC
CAGTTCCATCTAGAAGATGTTTCGATATTGACCGTCGTTGTGTGTACTGG
AGGAATCACGGCTATTGTCGAAGATATTATTATCAAAATCGATGTCAAAA
AACTTGTGGTGTATGTAGAGGTAagaattttttcattgcaaaaAGAATGT
TTCAATGATTGTGATTAGAATATAGTTCTGGGATAATGCAAAGTACAAGA
TCTCAATGCAATAGATACATGTGTTATCAAGCTAATGCCTTTACGTTTAA
CTGGCCTAACTTAAGAGAGTTTTCAGGCTTATACAACAAGATTCAACCAT
CATTTAGTTGACAGCATCAGAAGAGAGGAAAGAAGAATAAAGATAGCTAA
ATAGACAAAGTTATAACATCGGGTACAGACCCACAAATAATATAAATCTG
TACTAAGCCGTCAGAAGATGACAACAATATAAACATAAAGATATGCAATA
AATTATGGGTAGCGACTTGCTTCATATCGACTTAAGATCGTATTGACTAA
AATTCATTAAACTACTTTTGTCTCTATCATTAGCACTTCCAACGACAAGA
GTATGCGTGGACAGAGACTCGAGATGTCCTTTTTGGGCAAGACGCTATCA
ATGTTTCCTCAATTCAAGATATATGAATCGGAATTGTAAAAAATCTTGTG
GAAAATGTCCTAAACGTAACGACTACAACATACtatgttggacggtgaaa
aagaatgcggctattatattttgatttttcccgacatgtttcggactcgg
tccgttctcaagggaatgatatttctatataaaaaaaagtgtttctatac
aaaattatttgacgtcaaattggaCAAATACGTCATTTTAGGCGATTTCG
GCTTGAAAATGGGTTGGTGTAAATGGGGCCATCTGATAAGTTGAATTCGG
TCTAAACGACTACAACATactacatacatacatacataactTCATCCCTC
TCAACATACTATTACCATTTAAACTATGAATCAGTGCCCTTTTTTGAGTA
TTCGTCTGCAATCGAGGAAAAAGTGAAAACGTTGGGtgtaaattttgaat
atttagtgTACAATCTTTTCGCCATTTTCTTAAGTCATTCGATCTGGGTA
AAATTATAGAGATCAGCACCTTTTCTATTTCATAGCAAAACCAAAACCAA
AGCCAAGGCCAAGAACAACAAAGACAACGACAACCACAACAACCACAACC
ACATCTACGACCACTTCAAGTAGAAAAAATCCACTTATCCCAAAGCGTAC
CTCGAGGGAACCTTGCCCTTGTTGTAGATGCTCAAAATAATAGTAATAGA
ACAGAACGATAACAGTAATAGAACTAGCCGTCATCCGGGTCGCACCCGTC
GATTAGAGTGTGCCTTACGCATGACAAAGCCCTTAGGATGGTGGGTAGGG
TGTTTTAGGGATTTATTCAAACTCTAAGAACGAAAAATTACCACTTAAAA
TCGATCGAAATTCAACAAGTGAAATAAGAAAACAAAGAGAAACAAACGAG
TACAACAAAAATTTTAGGAATGAATTTCACAAAGACGAccatcaaaatca
acaaaatcaactTTGTTTCGCTCATTTTCAGCTGATCCACCACCACCTGT
TCCAGAAGTTACAAAACCTCCAACTCCAAGAGTTACAAGTAAGTCGATAT
CTGAATCTTAGAAATCCCTAAAAATATTAGTCAGCGAATCAATCTTAAAC
ataacaaatctcttttgacttTAGCTGATGGAATCCCGCTACCTGTTCCA
GAAGTTACAAAACCTCCAACTCCAAAAGTTACAAGTAAGTTAATATCTGA
ATCTTGGAAGTAACCCAAAATATTAATCAGAGGATCAGTCTTAAACataa
caaatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAG
TGACAAAACCTCCAACCTCAAAAGTTACAAGTACCATAAGTCAATATCTG
AATCTTGGAAATCCTCCAAAATATAAAAGAGAGGATCAATCTTAAACata
acaaatctcttttgacttTAGCTGATGGAATCCCGCCACCTGTTCCAGAA
GTTACAAAACCTCCAACTCCAAAAGTTAAAAGTAAGTCAATATCTGAATC
TTAGAAATCCCTCAAAATATAAAACAGAGGATCAATCTTAAACataacaa
atctcttttgacttTAGCTGATGGAATCCCACCACCTGTTCCAGAAGTGA
CAAAACCTCCAACTCCAAAAGTTACAAGTAAGTTAATATCTGAATCTTAA
AAGTAACCCAAAATATTAATCAGAGGATCAATCTTAAACATAACAAATCT
CTTTTAACTTTAGCTGATGGAATCCCGCCACCTGTTCCAGAAGTTACAAA
ACCTccaactcaaaaagttaaaagtaagTCAATATCTGAATCTTAGAAGT
AACCCAAAATATTAATCAGAGAATAAATTTTAAACCAAAAGAATTCTTTT
GACTTTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTC
CAACTCCAAAAGTTAAAAGTAAGTTAATATCTGAATCTTAGAAGTAACCC
AAAATATTAAACAGAGGATCAGTCTTAAACataacaaatctcttttgact
tTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAAC
TTCAAAAGTTACAAGTGAGTCAATATCTGAATCTTAGAAATccataaaaa
tattaaacagAGGATCAGTCTTAAACataacaaatctcttttgacttTAG
CTGATGGAATCCCGCCGCCTGTTTCAGAAGTTACAAAACctccaatttca
aaatttacaagTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATT
AAACAGAGGATCAGTCTTAAACataacaaatctcttttgacttTAGCTGA
TGGAATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAG
TTACAAGTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAAC
AGAGGATCAGTCTTAAACataacaaatctcttttgacttTAGCTGATGGA
ATCCCGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTAC
AAGTGAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAG
GATCAGTCTTAAACataacaaatctcttttgacttTAGCTGATGGAATCC
CGCCGCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGT
GAGTCAATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATC
AGTCTTAAACataacaaatctcttttgacttTAGCTGATGGAATCCCGCC
GCCTGTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGT
CAATATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTC
TTAAACataacaaatctcttttgacttTAGCTGATGGAATCCCGCCGCCT
GTTCCAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAAT
ATCTGAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTCTTAA
ACataacaaatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTC
CAGAAGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAATATCT
GAATCTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTCTTAAACat
aacaaatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGA
AGTTACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAATATCTGAAT
CTTAGAAGTAACCCAAAATATTAAACAGAGGATCAGTCTTAAACataaca
aatctcttttgacttTAGCTGATGGAATCCCGCCGCCTGTTCCAGAAGTT
ACAAAACCTCCAACTTCAAAAGTTACAAGTGAGTCAATATCTGAATCTTA
GAAATCCCTAAAAATATTAAACAGAGGATCAGTCTTAAACataacaaatc
tcttttgacttTAGCTGATGGAACCCCGCCGCCTGTTCCAGAGGTGACAA
AACCTCCGACTCCGAAAGTTACAAGTAAGTTAAAAGGGACATAACAATGA
TCTCAGCGTATCTGTTTTCTTAATATTCACCATAACCTGTGAAGAATTGA
CCTGATATTACAACACTATTACTATTTCACTTTCAGCTGAAGAATTACCC
ATCATTCCACCAATACCGCCAATACCTCCAATACCACCAATCCCACCAAT
CCCAGCGAATCCTATGAAATGCCGTAAACAGGTCagaaaaacacttttgt
ttgttttacttACTTAGAGAGCGTTCTAGTTCACAATCGTTCTAAACATT
CTTTCGACAGCAACGGTATTAGTAagtttcaattaaaaaaaagttcgttC
CTAAAGTCTGTCACAAAGCTTTCTGAAAACTTTACATGGTCTATTTACGA
GCTATATTAAAAAGCCCACATACCTTTATGTTGGAAGTTCTGAAGCAAGG
GAGCTTTAGAGATCTCAAATCAGACCCGCTGAAATTTTTCATAGCTACCC
CAGCGGAATTCTAAACTTCCCCGGGGAACTGAGACAGTGAGACAAGGGTT
GTCTTTATACTTTTGAAGGACAAAACAATTGTCAGTGGTGTGTCTTTACC
TTCTTCCTTTTTATAGCCCAACGGCAAGCTCGTTTGTAAAGGAACATCAC
GCGTAATTTACAGAGGTGAAAACGATGAAGCGAAAAAGAATTGAACAACA
AAATACCcaaagaaagtattttaaagATAAACCCATAATTCACAAATTAT
AATTATATACAAATATCCCTTAGCAGAAAATTTGACTAGCACTTcttgat
tttcaaagaaatatatttaagatttaaaaaaatcaagtgcACTGATCTTT
TAGGAAAATGAATCGCAGCATCGCAGGGTATGCAGGGTATTAGAAATTTG
CTATTAGAAATTATTCTGTGACCCTCTTATCGATTCTCCGCCGAAACAAT
TATTCtctgtatttattttttgtcatttaaaGAAGGCATCAATTTCACTA
ATCCTTGGGAATATTTCAGAGCCATAGTAAAATCTGTCATATTTTACGNA
ATTTTTCATAGCTACCCCAGCGGAATTCTAAACTTCCCCGGGGAACTGAG
ACAGTGAGACAAGGGTTGTCTTTATACTTTTGAAGGACAAAGCAATTGTC
AGTGGTGTGTCTTTACCTTCTTCCTTTTTATAGCCCAACGGCAAGCTCGT
TTGTAAAGGAACATCACGCGTAATTTACAGAGGTGAAAACGATGAAGCGA
AAAAGAATTGAACAACAAAATACCcaaagaaagtattttaaagATAAACC
CATAATTCACAAATTATAATTATATACAAATATCCCTTAGCAGAAAATTT
GACTAGCACTTcttgattttcaaagaaatatatttaagatttaaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007938XLOC_007938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014176-exon-sc0000183-1491911889:28106..28345TCONS_00014176-exon-sc0000183-1491911889:28106..28345Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1510915933:28106..28345TCONS_00014176-exon-sc0000183-1510915933:28106..28345Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1575043694:28106..28345TCONS_00014176-exon-sc0000183-1575043694:28106..28345Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1491911889:28863..28985TCONS_00014176-exon-sc0000183-1491911889:28863..28985Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1510915933:28863..28985TCONS_00014176-exon-sc0000183-1510915933:28863..28985Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1575043694:28863..28985TCONS_00014176-exon-sc0000183-1575043694:28863..28985Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1491911889:29409..29525TCONS_00014176-exon-sc0000183-1491911889:29409..29525Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1510915933:29409..29525TCONS_00014176-exon-sc0000183-1510915933:29409..29525Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1575043694:29409..29525TCONS_00014176-exon-sc0000183-1575043694:29409..29525Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1491911889:29939..30070TCONS_00014176-exon-sc0000183-1491911889:29939..30070Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1510915933:29939..30070TCONS_00014176-exon-sc0000183-1510915933:29939..30070Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1575043694:29939..30070TCONS_00014176-exon-sc0000183-1575043694:29939..30070Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1491911889:30541..30624TCONS_00014176-exon-sc0000183-1491911889:30541..30624Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1510915933:30541..30624TCONS_00014176-exon-sc0000183-1510915933:30541..30624Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1575043694:30541..30624TCONS_00014176-exon-sc0000183-1575043694:30541..30624Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1491911889:30987..31043TCONS_00014176-exon-sc0000183-1491911889:30987..31043Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1510915933:30987..31043TCONS_00014176-exon-sc0000183-1510915933:30987..31043Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1575043694:30987..31043TCONS_00014176-exon-sc0000183-1575043694:30987..31043Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1491911889:31427..31486TCONS_00014176-exon-sc0000183-1491911889:31427..31486Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1510915933:31427..31486TCONS_00014176-exon-sc0000183-1510915933:31427..31486Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1575043694:31427..31486TCONS_00014176-exon-sc0000183-1575043694:31427..31486Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1491911889:31573..31632TCONS_00014176-exon-sc0000183-1491911889:31573..31632Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1510915933:31573..31632TCONS_00014176-exon-sc0000183-1510915933:31573..31632Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1575043694:31573..31632TCONS_00014176-exon-sc0000183-1575043694:31573..31632Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1491911889:33642..33736TCONS_00014176-exon-sc0000183-1491911889:33642..33736Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1510915933:33642..33736TCONS_00014176-exon-sc0000183-1510915933:33642..33736Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1575043694:33642..33736TCONS_00014176-exon-sc0000183-1575043694:33642..33736Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1491911889:34689..34905TCONS_00014176-exon-sc0000183-1491911889:34689..34905Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1510915933:34689..34905TCONS_00014176-exon-sc0000183-1510915933:34689..34905Clytia hemisphaericaexon
TCONS_00014176-exon-sc0000183-1575043694:34689..34905TCONS_00014176-exon-sc0000183-1575043694:34689..34905Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:28106..34905 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0354471	0	0	0	0	0	0	0	0	0	0.121045	0	0	0	0	0.577572	1.12994	0	0	5.82064	6.5255	2.92582	2.02396	0.558841	0	0	0	0.241206	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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