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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014109 ID=TCONS_00014109|Name=TCONS_00014109|organism=Clytia hemisphaerica|type=transcript|length=1070bpRun BLAST on NCBI protein sequence of TCONS_00014109-protein >TCONS_00014109-protein ID=TCONS_00014109-protein|Name=TCONS_00014109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp FLLYMTKKSNKTTMIDQYSLLVGLGFGFVIGYFIFKKEKSSVEVESKDIDRun BLAST on NCBI transcript from alignment at sc0000181:303339..332557+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014109 ID=TCONS_00014109|Name=TCONS_00014109|organism=Clytia hemisphaerica|type=transcript|length=29219bp|location=Sequence derived from alignment at sc0000181:303339..332557+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000181:303339..332557+ >TCONS_00014109 ID=TCONS_00014109|Name=TCONS_00014109|organism=Clytia hemisphaerica|type=CDS|length=3474bp|location=Sequence derived from alignment at sc0000181:303339..332557+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00014109 vs. Swiss-Prot (Human)
Match: PTH2 (Peptidyl-tRNA hydrolase 2, mitochondrial OS=Homo sapiens GN=PTRH2 PE=1 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 7.414e-41 Identity = 74/134 (55.22%), Postives = 89/134 (66.42%), Query Frame = 1
Query: 172 EFKMILVVRQDLGMGKGKIAAQCCHAAVDVYNKAKKKHPQWVKTWEQVGCQKVALKCPDEETMIALQTHAASLGLDARIIXRIALQTHAASLGLDARIIQDAGRTQIPSGSRTVLGIGPAPFELVDKVTGHLKL 573
E+KMILVVR DL MGKGK+AAQC HAAV Y + ++++P+ +K WE G KV +K PDEET+I AL HA LGL +IQDAGRTQI GS+TVLGIGP P +L+DKVTGHLKL
Sbjct: 64 EYKMILVVRNDLKMGKGKVAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLI-------------------ALLAHAKMLGLTVSLIQDAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178 The following BLAST results are available for this feature:
BLAST of TCONS_00014109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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