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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000315 ID=TCONS_00000315|Name=TCONS_00000315|organism=Clytia hemisphaerica|type=transcript|length=1298bp
ATGATACTCTTCTGTGTCACAATAACCTGATTTACACGTCACAGTGTAAC
AATAGCTTTGAATCATAAATGCTAAATCACATCCATGTTCGCGACAACAG
ACTTCAATGCATTGATCATCAGTATCCATTACTCCGTGACGCTTAAAATT
CCCGAGAGGCAAACCCCCTGATAATGTTGTATCCTCAATGAAAGTTGCTT
CCAAACACTTTGAATTTGCTGTCGAATCAGTTGCTTTAACTGGGTGTTGT
AAAACAGCTTTTAAATCTTCATTTGTGGTGTCTTTCAGTGACTTCGCAGG
TTTTCGGAACCTGATGATTTTAGTGTCATACTTATTACCCTCGACTTTTT
GTGTTTCGCAGCTCTCCTTAGAATGACATTCAACTGCAAAACATTTGCCT
TTGGTAATGAAAACGAGGTCACATTTATCATTATGGCAACAAGCTTCAGC
GCAACCATTTTCATCAGAAGATGAATCAATGTCGGTGTACGTACCAGCTT
CCAGTCCATTCTTCAAAATTGAATCGTGTTCAATGTTTACTACCTTACAT
TTACCATCATCCGCTTTCTCTCGATTTGCTGATGCTTCAATGGTTGCCAA
TTCTACCGAAGCTTTGTCTGCCATATTTGATTTGATGTCACCAATCTCCT
TGCGTAAGCTTGTCTGCATTTTATCCATTGTTGAAAGAATGTCAGTTTTA
AATTCATCTGATTTTGTATTATCCTTTGAAGGTTCTTTACTTACTTTCGA
GCTCAAATCTTTTAACCCATTTTCCAATTTCTTCATCTCTTCTTTAGTCT
GCAGTTTATCTTTATTTCCCTCATTCTGGTCCTGATTTTTGCTCTTCAGT
TGTTCTTTAATATCAGCAATGCTATCTCGAAGGTCGTCAACCTTCTCATC
TCGGGACGTAAGTTTCTGGACCAGATTTTCAAGTCTTTCGATGAATTGAC
TGTTAACGTCACTTCCTTGAGCTTGAGTTGGTCGCAACTTATTTCTCAAC
ATTTGtctttttaaatctttgatTTCATTCATCACTGCTTGATCTGCAAT
CTTGGATTTGACGTCATTCAGTTCACTCTCTAACCTATCGTTAGATCTAC
TCTCCACCATTTGTCGCGTGATCTTTTTCAACATTCCTTCTAATcgtctt
tcattttcattgtttttataacgTTGGAGTTTCTCTTCCAGCTCTCCAAT
CCTTGGATCTCTACCACGATTTCTTGACCAATCAGGGTCGAATTCAGTGT
AATCATTATAAAAATCGTCGTTTTCCTCGGCAGGAAAGCCATGTGAGT Run BLAST on NCBI protein sequence of TCONS_00000315-protein >TCONS_00000315-protein ID=TCONS_00000315-protein|Name=TCONS_00000315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp
SHGFPAEENDDFYNDYTEFDPDWSRNRGRDPRIGELEEKLQRYKNNENER
RLEGMLKKITRQMVESRSNDRLESELNDVKSKIADQAVMNEIKDLKRQML
RNKLRPTQAQGSDVNSQFIERLENLVQKLTSRDEKVDDLRDSIADIKEQL
KSKNQDQNEGNKDKLQTKEEMKKLENGLKDLSSKVSKEPSKDNTKSDEFK
TDILSTMDKMQTSLRKEIGDIKSNMADKASVELATIEASANREKADDGKC
KVVNIEHDSILKNGLEAGTYTDIDSSSDENGCAEACCHNDKCDLVFITKG
KCFAVECHSKESCETQKVEGNKYDTKIIRFRKPAKSLKDTTNEDLKAVLQ
HPVKATDSTANSKCLEATFIEDTTLSGGLPLGNFKRHGVMDTDDQCIEVC
CREHGCDLAFMIQSYCYTVTCKSGYCDTEEYH Run BLAST on NCBI transcript from alignment at sc0000001:1043404..1044701 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000315 ID=TCONS_00000315|Name=TCONS_00000315|organism=Clytia hemisphaerica|type=transcript|length=1298bp|location=Sequence derived from alignment at sc0000001:1043404..1044701 (Clytia hemisphaerica)
ACTCACATGGCTTTCCTGCCGAGGAAAACGACGATTTTTATAATGATTAC
ACTGAATTCGACCCTGATTGGTCAAGAAATCGTGGTAGAGATCCAAGGAT
TGGAGAGCTGGAAGAGAAACTCCAAcgttataaaaacaatgaaaatgaaa
gacgATTAGAAGGAATGTTGAAAAAGATCACGCGACAAATGGTGGAGAGT
AGATCTAACGATAGGTTAGAGAGTGAACTGAATGACGTCAAATCCAAGAT
TGCAGATCAAGCAGTGATGAATGAAatcaaagatttaaaaagaCAAATGT
TGAGAAATAAGTTGCGACCAACTCAAGCTCAAGGAAGTGACGTTAACAGT
CAATTCATCGAAAGACTTGAAAATCTGGTCCAGAAACTTACGTCCCGAGA
TGAGAAGGTTGACGACCTTCGAGATAGCATTGCTGATATTAAAGAACAAC
TGAAGAGCAAAAATCAGGACCAGAATGAGGGAAATAAAGATAAACTGCAG
ACTAAAGAAGAGATGAAGAAATTGGAAAATGGGTTAAAAGATTTGAGCTC
GAAAGTAAGTAAAGAACCTTCAAAGGATAATACAAAATCAGATGAATTTA
AAACTGACATTCTTTCAACAATGGATAAAATGCAGACAAGCTTACGCAAG
GAGATTGGTGACATCAAATCAAATATGGCAGACAAAGCTTCGGTAGAATT
GGCAACCATTGAAGCATCAGCAAATCGAGAGAAAGCGGATGATGGTAAAT
GTAAGGTAGTAAACATTGAACACGATTCAATTTTGAAGAATGGACTGGAA
GCTGGTACGTACACCGACATTGATTCATCTTCTGATGAAAATGGTTGCGC
TGAAGCTTGTTGCCATAATGATAAATGTGACCTCGTTTTCATTACCAAAG
GCAAATGTTTTGCAGTTGAATGTCATTCTAAGGAGAGCTGCGAAACACAA
AAAGTCGAGGGTAATAAGTATGACACTAAAATCATCAGGTTCCGAAAACC
TGCGAAGTCACTGAAAGACACCACAAATGAAGATTTAAAAGCTGTTTTAC
AACACCCAGTTAAAGCAACTGATTCGACAGCAAATTCAAAGTGTTTGGAA
GCAACTTTCATTGAGGATACAACATTATCAGGGGGTTTGCCTCTCGGGAA
TTTTAAGCGTCACGGAGTAATGGATACTGATGATCAATGCATTGAAGTCT
GTTGTCGCGAACATGGATGTGATTTAGCATTTATGATTCAAAGCTATTGT
TACACTGTGACGTGTAAATCAGGTTATTGTGACACAGAAGAGTATCAT Coding sequence (CDS) from alignment at sc0000001:1043404..1044701 >TCONS_00000315 ID=TCONS_00000315|Name=TCONS_00000315|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000001:1043404..1044701 (Clytia hemisphaerica)
TCACATGGCTTTCCTGCCGAGGAAAACGACGATTTTTATAATGATTACAC
TGAATTCGACCCTGATTGGTCAAGAAATCGTGGTAGAGATCCAAGGATTG
GAGAGCTGGAAGAGAAACTCCAAcgttataaaaacaatgaaaatgaaaga
cgATTAGAAGGAATGTTGAAAAAGATCACGCGACAAATGGTGGAGAGTAG
ATCTAACGATAGGTTAGAGAGTGAACTGAATGACGTCAAATCCAAGATTG
CAGATCAAGCAGTGATGAATGAAatcaaagatttaaaaagaCAAATGTTG
AGAAATAAGTTGCGACCAACTCAAGCTCAAGGAAGTGACGTTAACAGTCA
ATTCATCGAAAGACTTGAAAATCTGGTCCAGAAACTTACGTCCCGAGATG
AGAAGGTTGACGACCTTCGAGATAGCATTGCTGATATTAAAGAACAACTG
AAGAGCAAAAATCAGGACCAGAATGAGGGAAATAAAGATAAACTGCAGAC
TAAAGAAGAGATGAAGAAATTGGAAAATGGGTTAAAAGATTTGAGCTCGA
AAGTAAGTAAAGAACCTTCAAAGGATAATACAAAATCAGATGAATTTAAA
ACTGACATTCTTTCAACAATGGATAAAATGCAGACAAGCTTACGCAAGGA
GATTGGTGACATCAAATCAAATATGGCAGACAAAGCTTCGGTAGAATTGG
CAACCATTGAAGCATCAGCAAATCGAGAGAAAGCGGATGATGGTAAATGT
AAGGTAGTAAACATTGAACACGATTCAATTTTGAAGAATGGACTGGAAGC
TGGTACGTACACCGACATTGATTCATCTTCTGATGAAAATGGTTGCGCTG
AAGCTTGTTGCCATAATGATAAATGTGACCTCGTTTTCATTACCAAAGGC
AAATGTTTTGCAGTTGAATGTCATTCTAAGGAGAGCTGCGAAACACAAAA
AGTCGAGGGTAATAAGTATGACACTAAAATCATCAGGTTCCGAAAACCTG
CGAAGTCACTGAAAGACACCACAAATGAAGATTTAAAAGCTGTTTTACAA
CACCCAGTTAAAGCAACTGATTCGACAGCAAATTCAAAGTGTTTGGAAGC
AACTTTCATTGAGGATACAACATTATCAGGGGGTTTGCCTCTCGGGAATT
TTAAGCGTCACGGAGTAATGGATACTGATGATCAATGCATTGAAGTCTGT
TGTCGCGAACATGGATGTGATTTAGCATTTATGATTCAAAGCTATTGTTA
CACTGTGACGTGTAAATCAGGTTATTGTGACACAGAAGAGTATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000315-exon-sc0000001-1491911889:1043404..1044701 | TCONS_00000315-exon-sc0000001-1491911889:1043404..1044701 | Clytia hemisphaerica | exon |
| TCONS_00000315-exon-sc0000001-1510915933:1043404..1044701 | TCONS_00000315-exon-sc0000001-1510915933:1043404..1044701 | Clytia hemisphaerica | exon |
| TCONS_00000315-exon-sc0000001-1575043694:1043404..1044701 | TCONS_00000315-exon-sc0000001-1575043694:1043404..1044701 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000001 | supercontig | sc0000001:1043404..1044701 . |
Blast
The following BLAST results are available for this feature:
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