TCONS_00013917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013917
Unique NameTCONS_00013917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013917 ID=TCONS_00013917|Name=TCONS_00013917|organism=Clytia hemisphaerica|type=transcript|length=372bp
TCCATATGCATAAAGTTTTGCGATCAGAAGATCATGAGGCAAACAGTCAA
AGGCTTTAGACAGATCCATCAGAATTGCTCCAATCTTTTTTGATTTGGAC
AGtgaattttgccattttcgtaACATATTTAGTAAAGCACTCTGCGTGCT
ATACTGTTTACGAAAACCACAGAGTCCATTAGAGAAAAATGATTCAAAGA
AGGTGTTGAGTTgatttgaaataagtttttcaaagattttagacAGAGAT
GGGAGGAGACTGACGGGTCTGTAATCATCCTTGTCATGTTTGCTGTTTTT
CTTATGGACTGGAATTATATCAGCAAGCTTCAAGCTGTCAGGAAAGTTTT
GAGATTGAAGAGAGTTATTGAA
Run BLAST on NCBI

protein sequence of TCONS_00013917-protein

>TCONS_00013917-protein ID=TCONS_00013917-protein|Name=TCONS_00013917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
FNNSLQSQNFPDSLKLADIIPVHKKNSKHDKDDYRPVSLLPSLSKIFEKL
ISNQLNTFFESFFSNGLCGFRKQYSTQSALLNMLRKWQNSLSKSKKIGAI
LMDLSKAFDCLPHDLLIAKLYAYG
Run BLAST on NCBI

transcript from alignment at sc0000174:51618..51989

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013917 ID=TCONS_00013917|Name=TCONS_00013917|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at sc0000174:51618..51989 (Clytia hemisphaerica)
TTCAATAACTCTCTTCAATCTCAAAACTTTCCTGACAGCTTGAAGCTTGC
TGATATAATTCCAGTCCATAAGAAAAACAGCAAACATGACAAGGATGATT
ACAGACCCGTCAGTCTCCTCCCATCTCTgtctaaaatctttgaaaaactt
atttcaaatcAACTCAACACCTTCTTTGAATCATTTTTCTCTAATGGACT
CTGTGGTTTTCGTAAACAGTATAGCACGCAGAGTGCTTTACTAAATATGT
tacgaaaatggcaaaattcaCTGTCCAAATCAAAAAAGATTGGAGCAATT
CTGATGGATCTGTCTAAAGCCTTTGACTGTTTGCCTCATGATCTTCTGAT
CGCAAAACTTTATGCATATGGA

Coding sequence (CDS) from alignment at sc0000174:51618..51989

>TCONS_00013917 ID=TCONS_00013917|Name=TCONS_00013917|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at sc0000174:51618..51989 (Clytia hemisphaerica)
TTCAATAACTCTCTTCAATCTCAAAACTTTCCTGACAGCTTGAAGCTTGC
TGATATAATTCCAGTCCATAAGAAAAACAGCAAACATGACAAGGATGATT
ACAGACCCGTCAGTCTCCTCCCATCTCTgtctaaaatctttgaaaaactt
atttcaaatcAACTCAACACCTTCTTTGAATCATTTTTCTCTAATGGACT
CTGTGGTTTTCGTAAACAGTATAGCACGCAGAGTGCTTTACTAAATATGT
tacgaaaatggcaaaattcaCTGTCCAAATCAAAAAAGATTGGAGCAATT
CTGATGGATCTGTCTAAAGCCTTTGACTGTTTGCCTCATGATCTTCTGAT
CGCAAAACTTTATGCATATGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007771XLOC_007771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013917-exon-sc0000174-1491911889:51618..51989TCONS_00013917-exon-sc0000174-1491911889:51618..51989Clytia hemisphaericaexon
TCONS_00013917-exon-sc0000174-1510915933:51618..51989TCONS_00013917-exon-sc0000174-1510915933:51618..51989Clytia hemisphaericaexon
TCONS_00013917-exon-sc0000174-1575043694:51618..51989TCONS_00013917-exon-sc0000174-1575043694:51618..51989Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013917-proteinTCONS_00013917-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000174supercontigsc0000174:51618..51989 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.863932	0	0.91261	1.85455	1.26375	1.77424	2.23864	1.12679	0.996244	0.337553	1.06293	1.19658	0.88382	0.382159	0	0.235739	0.591689	0	0	0	0.549202	0	0.249559	0	0.498979	1.31104	3.77079	1.7361	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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