TCONS_00013682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013682
Unique NameTCONS_00013682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013682 ID=TCONS_00013682|Name=TCONS_00013682|organism=Clytia hemisphaerica|type=transcript|length=1259bp
cAAGCGTGTTTCTCGGCGATCGAAGAAAGACGGGAAACGAGTTTCTCAAC
GGTTTCGCACGCAAAGCTGCTTGATGATCTTTGCGCAGATTGGGACAAGC
TGCGCGCATGCGTCAGAAATGCGTGTTTAAATGTCTCgtgttttcatttc
aaaatcctCGCTCTTGCAAAAAGTTGTAGTTGAGAAAAGAAGTTATGGCA
CAAAACAAAGACTTGAAAAACATTATAAAAGAGATTTTGGCACAGCTGAA
GCAGAGGCtcgaagaaaaaagattttacgaCCAGACAACCTTTTCAAAGC
ATGAGGATCAATTTAAGAACACACTAgaagttattgaaaatttgaatgat
GCCATAGAACCGCTTGAAGCTGGAGAAAATATATCTGCCATGACGTTCAT
GAAACAAGAACAACCGAATCATGGTATCGATGCTATATTTGCTGGTACCG
ACATTATTATCAATTTGTGGTTATCGTGCTCTGTTGCAGATATCAGTGTT
TTGAGATTATGATGCACATATGTTGCATATTTGTGGATATGAATGCCTCG
TTGCTCATATCAGTTTTTGGTATCCTGTTGCAATACCTTTTTAAAGATAT
CGTTTGCGTGAATGCAGATATCGTTTGACAATTATCATGGTATCACTGCT
CTGTTGCATATGCCATTTCCAGAGGTATGGGAGTTTTCTTACATtatttg
ttttatcattttattcGGAGGAGATTACGCATCCCTTCTCGAGCATAGGA
TAGAGGCAATCAAAAATTAGGAACCCTGATGCTAAATAAAATCGAAAAGA
GCCTATTACATCTGAGTTATTGTTGATCGTTACACCACTTCGGACAACCA
TATTATATATATCCTACACGACTGCAAGGGAGTCTTTTGAAGAGCATTTA
TCGGGTCGAGAAGAACATTTTGCAAGAATTCTcgtcattggattggtcgt
taactattcagACAAAGCTCTTATTACatgttttctaaagaacgcgtcat
ctttattgttttgaataactaattatgTAAACATCATATAAAAACCTCAA
CCCAATTGCATTATCATCAAGAACAGTCATTCTAACAGgttcaaaatttt
ccaaccgATTAGGAATataaacaaagaattttttgcatccataccttttc
tttttttcccctCGTGTTTTTCATTGCAAGATGTATccaataaacaaaca
aattcatgttttttattatttctacTTTCTATGTATTATTCTTAAGCTTT
GAGGAGANN
Run BLAST on NCBI

protein sequence of TCONS_00013682-protein

>TCONS_00013682-protein ID=TCONS_00013682-protein|Name=TCONS_00013682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MAQNKDLKNIIKEILAQLKQRLEEKRFYDQTTFSKHEDQFKNTLEVIENL
NDAIEPLEAGENISAMTFMKQEQPNHGIDAIFAGTDIIINLWLSCSVADI
SVLRL
Run BLAST on NCBI

transcript from alignment at sc0000171:357275..360935+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013682 ID=TCONS_00013682|Name=TCONS_00013682|organism=Clytia hemisphaerica|type=transcript|length=3661bp|location=Sequence derived from alignment at sc0000171:357275..360935+ (Clytia hemisphaerica)
cAAGCGTGTTTCTCGGCGATCGAAGAAAGACGGGAAACGAGTTTCTCAAC
GGTTTCGCACGCAAAGCTGCTTGATGATCTTTGCGCAGATTGGGACAAGC
TGCGCGCATGCGTCAGAAATGCGTGTTTAAATGTCTCgtgttttcatttc
aaaatcctCGCTCTTGCAAAAAGTTGTAGTTGAGAAAAGAAGTTATGGCA
CAAAACAAAGACTTGAAAAACATTATAAAAGAGATTTTGGCACAGCTGAA
GCAGAGGCtcgaagaaaaaagattttacgaCCAGACAACCTTTTCAAAGC
ATGAGGATCAATTTAAGAACACACTAgaagttattgaaaatttgaatgat
GCCATAGAACCGCTTGAAGCTGGAGAAAATATATCTGCCATGACGTTCAT
GAAACAAGGTAAGTTCTTTTTAGAAGATAGGATTCAAATGCTAAGGCTTG
CTGACAGGGAAGGATGGACAGTGGTGAAACTTTGTGGACAAAATCTGTTG
ACAAAATCTGTTGCTTTCGAATGgggaaatgaaagaaaaacatttgaaag
agGCCAGAAAATCTGCCGaaagaataaaacaaaacaTAGAGATTGAACAG
AGAAAGATAAACTCGTCATCTTGTTTTTAATGATGTTGCGTGCTACAATT
GCAAAAAGTTGGACATTATTCGACATTTTGTGCAAAAGGAACAGCCACAA
GTCCCGAATTGTCAAAAAGTTCATCAACAACAACGAGTTCTAGCAAACAC
AGCTCATCAAATTCGtatcatcaaaatcaaaaagcaGAAGAAATTAGTGA
TTAACTGAACATAATAAACATAAAGGAAACAttgtgtttttatatttttt
ctaattgCTTTCGACGGTTGAGTTATCAATAACATCGCgaataacatttt
tttctttcttacatGGATCCCAAGGGAAGAGAACAAATCGGCTGACATCA
GTTCAAAATCTATAGATACCGATAATTGGTTCATCGACATTAAGATTTTC
CTATAATTTCATATCTCGGGTCGATTAATAGATCGATTTGCAAATAATTT
AAATACGAAGTCAACAAACTCANTAAGATTTTCCTATAATTTCACATTTC
GGGTCGATTAATAGATCGATTTGCAAATAATTTAAATACGAAGTCAACAA
ACTCATCTACTGGTATGAATACATTCGCTTGCCATTAGGGAAAAGATAAA
CTTAATTGGTTATGTCCTCCAATTTCTTTAGTCGGGAAAACCATCAAACA
TCTGAAAAACTGTCAAGAGAAAAGTATTCTTTTTATACCGTTATGGCAAT
CTGCTTATTTTTGGTTGACATTTAGACATTTTTTCAATGCTTCTCTGTCC
CtgtttatatgtttttttttttactctgcTGAACGATTATTGGAAATGCT
TATTTTGTTGTTGTGTACTTGACACTAGAGGCGAgaacatagtttgttct
tttttcgaTCCAGGTTTTTTATGATGTAATCTTGTAAtttgttttctcat
tttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCGATGCTATAT
TTGCTGGTACCGACATTATTATCAATTTCTGGCTATCGTGCTCTGTTGCA
GATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGAT
ATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAG
ATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATA
TGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGA
TATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATAT
GAATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGAT
ATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATATG
AATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAGATA
TCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTTGTGGATATGA
ATGCCTCGTTGCTCATATCAGTTTTTGGTATCGTGCTCTGTTGCAATACC
TTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGACAATTATCA
TGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATGGGAGTTTT
CTTACATTATGTTTTATCAATTTATTCGGAGGAGATTACGCATCCCTTCT
TGAGCAAAGGATAGAAGCAATAAAAGGTCAGAAACTATGATAAGTTCCAA
TGGAAAGGAATTCAAGCCTTTGGTTAAGCAATTTCTTGTGTTAGATCCTT
ATTTTATTAACAATTCTCACATTAGTTATAATTTTTGATGGTTTTCGCTA
ATTCTTACTCGTCANGAAGCcattgtcaatcattttcttgtGTTCTTATT
TTATTAACAGTTCTAACTAGTTGTAattttttatggttttttgGCTAATT
CTTACTCGTTAGCGCTACATCACATCCGAAGACGAATAATACATTTTTTC
AATGCATACTGCCCGTTTATAATTTTCTACTCTACTGAACAACTATTGGA
AATGCTTATTTCTTTGTTGTGTAATTGGCTCTAAAGGCAAGAGCatgttt
gttcttttttttgatccaagtttttcatgatgcaatcttgtaatttgttt
tctcattttcatgTGTAAAAATTGAGAACAACCGAATCATGGTATCGATG
CTATATTTGCTGGTACCGACATTATTATCAATTTGTGGTTATCGTGCTCT
GTTGCAGATATCAGTGTTTTGAGATTATGATGCACATATGTTGCATATTT
GTGGATATGAATGCCTCGTTGCTCATATCAGTTTTTGGTATCCTGTTGCA
ATACCTTTTTAAAGATATCGTTTGCGTGAATGCAGATATCGTTTGACAAT
TATCATGGTATCACTGCTCTGTTGCATATGCCATTTCCAGAGGTATGGGA
GTTTTCTTACATNGATGCAGATATCGATTGGCGATTAATTAGTATCACTG
CTCTGTTGCATATGCCACTTACAGAGGTATGAGAGTTTTCTTACATtatt
tgttttatcattttattcGGAGGAGATTACGCATCCCTTCTCGAGCATAG
GATAGAGGCAATCAAAAATTAGGAACCCTGATGCTAAATAAAATCGAAAA
GAGCCTATTACATCTGAGTTATTGTTGATCGTTACACCACTTCGGACAAC
CATATTATATATATCCTACACGACTGCAAGGGAGTCTTTTGAAGAGCATT
TATCGGGTCGAGAAGAACATTTTGCAAGAATTCTcgtcattggattggtc
gttaactattcagACAAAGCTCTTATTACatgttttctaaagaacgcgtc
atctttattgttttgaataactaattatgTAAACATCATATAAAAACCTC
AACCCAATTGCATTATCATCAAGAACAGTCATTCTAACAGgttcaaaatt
ttccaaccgATTAGGAATataaacaaagaattttttgcatccataccttt
tctttttttcccctCGTGTTTTTCATTGCAAGATGTATccaataaacaaa
caaattcatgttttttattatttctacTTTCTATGTATTATTCTTAAGCT
TTGAGGAGANN

Coding sequence (CDS) from alignment at sc0000171:357275..360935+

>TCONS_00013682 ID=TCONS_00013682|Name=TCONS_00013682|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at sc0000171:357275..360935+ (Clytia hemisphaerica)
ATGGCACAAAACAAAGACTTGAAAAACATTATAAAAGAGATTTTGGCACA
GCTGAAGCAGAGGCtcgaagaaaaaagattttacgaCCAGACAACCTTTT
CAAAGCATGAGGATCAATTTAAGAACACACTAgaagttattgaaaatttg
aatgatGCCATAGAACCGCTTGAAGCTGGAGAAAATATATCTGCCATGAC
GTTCATGAAACAAGAACAACCGAATCATGGTATCGATGCTATATTTGCTG
GTACCGACATTATTATCAATTTGTGGTTATCGTGCTCTGTTGCAGATATC
AGTGTTTTGAGATTATGAATGGCACAAAACAAAGACTTGAAAAACATTAT
AAAAGAGATTTTGGCACAGCTGAAGCAGAGGCtcgaagaaaaaagatttt
acgaCCAGACAACCTTTTCAAAGCATGAGGATCAATTTAAGAACACACTA
gaagttattgaaaatttgaatgatGCCATAGAACCGCTTGAAGCTGGAGA
AAATATATCTGCCATGACGTTCATGAAACAAGAACAACCGAATCATGGTA
TCGATGCTATATTTGCTGGTACCGACATTATTATCAATTTGTGGTTATCG
TGCTCTGTTGCAGATATCAGTGTTTTGAGATTATGAATGGCACAAAACAA
AGACTTGAAAAACATTATAAAAGAGATTTTGGCACAGCTGAAGCAGAGGC
tcgaagaaaaaagattttacgaCCAGACAACCTTTTCAAAGCATGAGGAT
CAATTTAAGAACACACTAgaagttattgaaaatttgaatgatGCCATAGA
ACCGCTTGAAGCTGGAGAAAATATATCTGCCATGACGTTCATGAAACAAG
AACAACCGAATCATGGTATCGATGCTATATTTGCTGGTACCGACATTATT
ATCAATTTGTGGTTATCGTGCTCTGTTGCAGATATCAGTGTTTTGAGATT
ATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007645XLOC_007645Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013682-proteinTCONS_00013682-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013682-exon-sc0000171-1491911889:357275..357682TCONS_00013682-exon-sc0000171-1491911889:357275..357682Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1510915933:357275..357682TCONS_00013682-exon-sc0000171-1510915933:357275..357682Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1575043694:357275..357682TCONS_00013682-exon-sc0000171-1575043694:357275..357682Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1491911889:358795..358838TCONS_00013682-exon-sc0000171-1491911889:358795..358838Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1510915933:358795..358838TCONS_00013682-exon-sc0000171-1510915933:358795..358838Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1575043694:358795..358838TCONS_00013682-exon-sc0000171-1575043694:358795..358838Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1491911889:360045..360284TCONS_00013682-exon-sc0000171-1491911889:360045..360284Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1510915933:360045..360284TCONS_00013682-exon-sc0000171-1510915933:360045..360284Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1575043694:360045..360284TCONS_00013682-exon-sc0000171-1575043694:360045..360284Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1491911889:360369..360935TCONS_00013682-exon-sc0000171-1491911889:360369..360935Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1510915933:360369..360935TCONS_00013682-exon-sc0000171-1510915933:360369..360935Clytia hemisphaericaexon
TCONS_00013682-exon-sc0000171-1575043694:360369..360935TCONS_00013682-exon-sc0000171-1575043694:360369..360935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000171supercontigsc0000171:357275..360935 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.19	29.4576	16.5636	12.5525	8.45506	5.90136	19.1026	19.1362	56.499	35.8052	32.8739	55.7522	8.25443	9.64741	12.5149	10.3916	11.3713	15.2749	6.28032	4.9763	11.3058	7.87098	21.1229	19.9541	0.065717	1.03243	0.245326	0.864083	12.5845	11.0738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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