|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00013607 ID=TCONS_00013607|Name=TCONS_00013607|organism=Clytia hemisphaerica|type=transcript|length=3035bp ttctgaatgattgtttaatggtcacgtcacgtagatatcaattataaacg tgttaaatgcataatccaggtaggtccatcaaagtatcacttgttacctc aaaatttgctctattttcttgccAGGTATTGGAAAAAATCAGCAGGAAAT ATGATGCAGCTATTatcataaaattgaaaatgggaaagaaaaagaagaga ggaggaaataagaaaaaaggtGATGAAAACATTGCCATTGACAATGAAGC TGCCGAAAGTGAAAATGTACAAGAAGAAAGCAAAGAGGAAAAGgatgaaa ctgaagaagaaaaatctaaatttacaGTCGAGGATCTAATGACAAGAGTT GAACAGTATCTTGAAAACTTTGAACATAATATGGCATTGATGTTTTGCCA AAAAGCGTTGGATATGGAACCCAATAATGTCAAAATTCATGAATGTTATG GAAATGTTTATGCGGAGACAGGAGATGTTGGGAATGCAATGAAACATTTT AATGAAGCTGTTCGTTTAGAACCAGACACTGGTCATGTTAAATATTTATA TCTTGGGCAAATTACTGAAGGCAGAGAAGCAGTTCAGCATTATGAAAAGG GTATTGTTATCATGAAGGAAACTATTGAATATCAAAAGAATAACAAAGAA AAACGTGATGATGAAAAGCCTCTTTCAAACGGCGATGTAGCCAATGTTTA TTGTTCTCTTGCCGAAATTTTTATGACTGATTGTTGTATGGAAGATGATG CTGAAGAACAATGTGAAAAGTATTGTAAACTAGCTGTTGAGACTGACGAA AAAAGTTTAGATGCTGCTGTCTCTATGTCGAACTTGTTGCTAAATCAAAG CAAAATGGATGATGCTAAAAAAGCAACAGAGAAAGCTTTGTCATTGTGGA CGGAGCTGTCAGCGAATATTGAAGAAGATTCTATTCCAGAGAATTTGTCT TATGAAGCCCGTGTGACTCTCATTAAGCTTTTGATTGAAGTTGAAATATA CGATAAAGTTTCTCCCATTGTTGATCAACTTATTGAGGAAAACGAAGATG ATATACGTATTTGGTATTATCTTGGCTTAGCAAAATCATTGATGAAGGAT ACTGATAATCCACGTTTTTATCTCGAGAAAGCTTTAGAGTTGATTGAGAA GACAGGTTTTCAGAATGATGATATGATAGCACACATTGAGCAATTATTGG TGGACTGTCCACCGGAAGATGAGATGGATGTTATAGAGGAGGGTGATGAA GATGAAGGcgactttgaaaatgaaaatgaaggacAGATGGATGTCGAATA AGGATTTATTTGCTAAGCAACTGAGAACTTAGAATTTTGGTGCTTATTAT GGTTATTATTGtaggaaattattttcaaatttttaaaacatttttttcaa tctaGATAAAACTCATTTGAAAAAGTAATGTTTTATGAGAATGTTGTTTG ATATTAAAGTCAGGGCTTTTTAAAACGGATTGCAATAATTAGTGGTTGGT AGATACAATTCTTCAGACAAGGGAAAGATGATGTTTTTTATTAAAGCTGA TGGATGTCTTTGAgtaatttttaaagttttttaaactttttataaacttt tatCATGCTTTTAGTCAGATTTTTGTTACTGTAGTGTTATTATATTTACA CTTTCAAATCTAGGGCCAGGTGACAGCAAACTAacagttttttttaatgt agGCAAGATTTATGTTAAAATATTGATACTCACAAGAAATATGctttttt tcctttcaaaaaagACATGactatgaaaaataaacaaaagtaaaaacaaa aacaatttcgGCTTGTAGTGCCCCTATAGTACAGCTTTGTAAAAACTTCA GACTCATACCAACATTCCATCCTCGTGACCCTCAAAAACTATAACGAGAT CGTGAAAAACTTTATTTGAAACTCTGGATGTCTCAAAGGCGACTTCCGAA AGTGCCCCTAGAAACGATATTCACAATCAGTTTCCagtcatttttctgtt tttgttccttAAACTTTACATTGGGGCTACATTTTAAAACTCTCCTTCAT TTTAGATTCAAATTTCGAATTTCTTTAAAGTTTGTATATTCAAAGAATTG AGAAAATAATATAGCCGTTTGAGACGAATGCTTCTTCCACAGGAACGATC CTTCCATCGGTGGCAACACTTTTAGTATCGTTAACATCTTCCCAATTTAC AATATAAGCATCTTCAAAGTCCTTTGCAAATATCGCTACATAAAGAATTA GTTGCTTCCAGTCAAAATAGCTTGCAGTGTCATTCGAGTGTTTGCACCAT TTGTTGCTTTTGGCCACTGTTCGATCAAATTCGTCTGttgttttgaaaac tttcagTGAAAACTTTCTACTATTcttatacaaaaataatttcacaTAAC AGCACACGTTGACCCCATAGTCAATATATTTTCGCCACTTCGTTAGTCTC GTTTTCCATTTTGCCGGATATATTGTACCCTGGTACCGAACTATCGAGTC TTTCAATGTTTTCAGATATTCACAATCCTGATCTATTGGTTTTGCTGTAA CTTCTTCGGTTAAGAGTTTCCACTGTTTAATTTCGTTATTTGCTTCATAT TGGTCTGGAAGGAGATATGTGAAAACATCTTGGATATCTGGATAGCTAAA TGTTTTGTGCAGTCTACTAGTTTGTTCGGCAAATATCTTCAGATTCTTTA CTTCTTTGCTTTGATCTCCCAAGTCTTTCTTCAACGAATCTAAATCGCTA CTGCTATCAACGTTGCCTTGCATTTCAAATAAGGAGCTTTTGATATCCCT GATCGCCTCATCATGTCTTTGAACTCTTTGTTTCAGTTGCAGATTAtctt tttctagattttcacaTCTTTTTATCGTGGTCGCGTGAAGACTTTGTAAG CTCTCAATCTTCCGGTTTTGCTCGTCCATCTTGAGTTTGAAATCCTTTCG TTCGATTGTAAACGCACTAACAGCCGTTAGAAGGAGCGAATCGTGTATGG GACGTTTTGCTTGATTATGAACTGGTAGTTTTGCT Run BLAST on NCBI protein sequence of TCONS_00013607-protein >TCONS_00013607-protein ID=TCONS_00013607-protein|Name=TCONS_00013607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MHNPGRSIKVSLVTSKFALFSCQVLEKISRKYDAAIIIKLKMGKKKKRGG NKKKGDENIAIDNEAAESENVQEESKEEKDETEEEKSKFTVEDLMTRVEQ YLENFEHNMALMFCQKALDMEPNNVKIHECYGNVYAETGDVGNAMKHFNE AVRLEPDTGHVKYLYLGQITEGREAVQHYEKGIVIMKETIEYQKNNKEKR DDEKPLSNGDVANVYCSLAEIFMTDCCMEDDAEEQCEKYCKLAVETDEKS LDAAVSMSNLLLNQSKMDDAKKATEKALSLWTELSANIEEDSIPENLSYE ARVTLIKLLIEVEIYDKVSPIVDQLIEENEDDIRIWYYLGLAKSLMKDTD NPRFYLEKALELIEKTGFQNDDMIAHIEQLLVDCPPEDEMDVIEEGDEDE GDFENENEGQMDVE Run BLAST on NCBI transcript from alignment at sc0000170:151212..155291- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00013607 ID=TCONS_00013607|Name=TCONS_00013607|organism=Clytia hemisphaerica|type=transcript|length=4080bp|location=Sequence derived from alignment at sc0000170:151212..155291- (Clytia hemisphaerica) TTCTGAATGATTGTTTAATGGTCACGTCACGTAGATATCAATTATAAACG
TGTTAAATGCATAATCCAGGTAGGTCCATCAAAGTATCACTTGTTACCTC
AAAATTTGCTCTATTTTCTTGCCAGGTATTGGAAAAAATCAGCAGGAAAT
ATGATGCAGGTAGTTACGCAAACAGAACAATTTTTCTATGACTGCTTAAA
GTCTGTCTCAATATAATCTGCAGCGGAGACAAAAAAAGCTGTACCTTTTG
ATGGAATTTTAATTTTAATGAAATGGCAGATTGTTGATAAGGAAAGAGTA
AAAATTAAAAATGAACTTTACTGAAATTTTTCTATTTCTTAATATTTCGC
TCTTGAATATCTTTTCAACAAACACAAAACCCCTATTTAGTTCAAATTCT
ATCAAAAGTTACAGCATTTCTGTCTCCACTGCAGAGTTATATTGAGTCAG
TCTCATCAGCAGTCTTTAAACACTCCTTTAAATGAGGAAGCACTTAGAGT
ATGTTTTTAAAAGAGTTTTAAGTCCCTTTTTCTGATGATGCAAACAATTT
TTAACAGGTTATGGTAATAGTATAAGAATTTTGTCAAAATTGTTTCGTCG
CAGATAGACTCTTAGTGTCTCAAGGCGCGGCAAAATTTGATAAAATATTT
TGCTGTTTTAAAATTTCTTTACAGATCTCTGTCTCACCAAAAATTTTTGT
CTCAAATTCATCCAGGATCCACTTTATGGTGCGTTTGAGTTGAAAACTTT
ACATTTGCCACTAAAATCGAAAACAGAGTGACATACATTGTGTTGCTTTA
TTTCACAACAACATTCTTTTAATGGGGCCCCCAGCGGTTTGCGTGAATGC
GTGAATGGGCATTTTTGGTTGCGTGAATGCGTGAAAATTGGGAAAAAAAT
GCGTGAATGCGTGAATTGAAAAAAATTGCGTGAACGTGAAAATTCACTTT
TTGATTGCGTGAATGCGTGAATCTGGGCTATTTTGTGCGTGAATACGTGA
ATTTTCACTTTTTTTCACCGATCATGTGCGGTTTTCCCGATTTTCCAATG
TTTCTCCGATTTTTCCCGAAAATTTTCCGATTTCCTTAAAAATTGGGTTA
TTGCGTGAAACTCGAGGAAAATTTGCGTGATTGCGTGAATTGAGGGTCCG
CTGGGGGGGCCTCTTTAATGTGTTCTCTCTAAAATCATTTCTCGTTTCAT
TTAGCTATTATCATAAAATTGAAAATGGGAAAGAAAAAGAAGAGAGGAGG
AAATAAGAAAAAAGGTGATGAAAACATTGCCATTGACAATGAAGCTGCCG
AAAGTGAAAATGTACAAGAAGAAAGCAAAGAGGAAAAGGATGAAACTGAA
GAAGAAAAATCTAAATTTACAGTCGAGGATCTAATGACAAGAGTTGAACA
GTATCTTGAAAACTTTGAACATAATATGGCATTGATGTTTTGCCAAAAAG
CGTTGGATATGGAACCCAATAATGTCAAAATTCATGAATGTTATGGAAAT
GTTTATGCGGAGACAGGAGATGTTGGGAATGCAATGAAACATTTTAATGA
AGCTGTTCGTTTAGAACCAGACACTGGTCATGTTAAATATTTATATCTTG
GGCAAATTACTGAAGGCAGAGAAGCAGTTCAGCATTATGAAAAGGGTATT
GTTATCATGAAGGAAACTATTGAATATCAAAAGAATAACAAAGAAAAACG
TGATGATGAAAAGCCTCTTTCAAACGGCGATGTAGCCAATGTTTATTGTT
CTCTTGCCGAAATTTTTATGACTGATTGTTGTATGGAAGATGATGCTGAA
GAACAATGTGAAAAGTATTGTAAACTAGCTGTTGAGACTGACGAAAAAAG
TTTAGATGCTGCTGTCTCTATGTCGAACTTGTTGCTAAATCAAAGCAAAA
TGGATGATGCTAAAAAAGCAACAGAGAAAGCTTTGTCATTGTGGACGGAG
CTGTCAGCGAATATTGAAGAAGATTCTATTCCAGAGAATTTGTCTTATGA
AGCCCGTGTGACTCTCATTAAGCTTTTGATTGAAGTTGAAATATACGATA
AAGTTTCTCCCATTGTTGATCAACTTATTGAGGAAAACGAAGATGATATA
CGTATTTGGTATTATCTTGGCTTAGCAAAATCATTGATGAAGGATACTGA
TAATCCACGTTTTTATCTCGAGAAAGCTTTAGAGTTGATTGAGAAGACAG
GTTTTCAGAATGATGATATGATAGCACACATTGAGCAATTATTGGTGGAC
TGTCCACCGGAAGATGAGATGGATGTTATAGAGGAGGGTGATGAAGATGA
AGGCGACTTTGAAAATGAAAATGAAGGACAGATGGATGTCGAATAAGGAT
TTATTTGCTAAGCAACTGAGAACTTAGAATTTTGGTGCTTATTATGGTTA
TTATTGTAGGAAATTATTTTCAAATTTTTAAAACATTTTTTTCAATCTAG
ATAAAACTCATTTGAAAAAGTAATGTTTTATGAGAATGTTGTTTGATATT
AAAGTCAGGGCTTTTTAAAACGGATTGCAATAATTAGTGGTTGGTAGATA
CAATTCTTCAGACAAGGGAAAGATGATGTTTTTTATTAAAGCTGATGGAT
GTCTTTGAGTAATTTTTAAAGTTTTTTAAACTTTTTATAAACTTTTATCA
TGCTTTTAGTCAGATTTTTGTTACTGTAGTGTTATTATATTTACACTTTC
AAATCTAGGGCCAGGTGACAGCAAACTAACAGTTTTTTTTAATGTAGGCA
AGATTTATGTTAAAATATTGATACTCACAAGAAATATGCTTTTTTTCCTT
TCAAAAAAGACATGACTATGAAAAATAAACAAAAGTAAAAACAAAAACAA
TTTCGGCTTGTAGTGCCCCTATAGTACAGCTTTGTAAAAACTTCAGACTC
ATACCAACATTCCATCCTCGTGACCCTCAAAAACTATAACGAGATCGTGA
AAAACTTTATTTGAAACTCTGGATGTCTCAAAGGCGACTTCCGAAAGTGC
CCCTAGAAACGATATTCACAATCAGTTTCCAGTCATTTTTCTGTTTTTGT
TCCTTAAACTTTACATTGGGGCTACATTTTAAAACTCTCCTTCATTTTAG
ATTCAAATTTCGAATTTCTTTAAAGTTTGTATATTCAAAGAATTGAGAAA
ATAATATAGCCGTTTGAGACGAATGCTTCTTCCACAGGAACGATCCTTCC
ATCGGTGGCAACACTTTTAGTATCGTTAACATCTTCCCAATTTACAATAT
AAGCATCTTCAAAGTCCTTTGCAAATATCGCTACATAAAGAATTAGTTGC
TTCCAGTCAAAATAGCTTGCAGTGTCATTCGAGTGTTTGCACCATTTGTT
GCTTTTGGCCACTGTTCGATCAAATTCGTCTGTTGTTTTGAAAACTTTCA
GTGAAAACTTTCTACTATTCTTATACAAAAATAATTTCACATAACAGCAC
ACGTTGACCCCATAGTCAATATATTTTCGCCACTTCGTTAGTCTCGTTTT
CCATTTTGCCGGATATATTGTACCCTGGTACCGAACTATCGAGTCTTTCA
ATGTTTTCAGATATTCACAATCCTGATCTATTGGTTTTGCTGTAACTTCT
TCGGTTAAGAGTTTCCACTGTTTAATTTCGTTATTTGCTTCATATTGGTC
TGGAAGGAGATATGTGAAAACATCTTGGATATCTGGATAGCTAAATGTTT
TGTGCAGTCTACTAGTTTGTTCGGCAAATATCTTCAGATTCTTTACTTCT
TTGCTTTGATCTCCCAAGTCTTTCTTCAACGAATCTAAATCGCTACTGCT
ATCAACGTTGCCTTGCATTTCAAATAAGGAGCTTTTGATATCCCTGATCG
CCTCATCATGTCTTTGAACTCTTTGTTTCAGTTGCAGATTATCTTTTTCT
AGATTTTCACATCTTTTTATCGTGGTCGCGTGAAGACTTTGTAAGCTCTC
AATCTTCCGGTTTTGCTCGTCCATCTTGAGTTTGAAATCCTTTCGTTCGA
TTGTAAACGCACTAACAGCCGTTAGAAGGAGCGAATCGTGTATGGGACGT
TTTGCTTGATTATGAACTGGTAGTTTTGCT Coding sequence (CDS) from alignment at sc0000170:151212..155291- >TCONS_00013607 ID=TCONS_00013607|Name=TCONS_00013607|organism=Clytia hemisphaerica|type=CDS|length=2490bp|location=Sequence derived from alignment at sc0000170:151212..155291- (Clytia hemisphaerica) CTATTATCATAAAATTGAAAATGGGAAAGAAAAAGAAGAGAGGAGGAAAT AAGAAAAAAGGTGATGAAAACATTGCCATTGACAATGAAGCTGCCGAAAG TGAAAATGTACAAGAAGAAAGCAAAGAGGAAAAGGATGAAACTGAAGAAG AAAAATCTAAATTTACAGTCGAGGATCTAATGACAAGAGTTGAACAGTAT CTTGAAAACTTTGAACATAATATGGCATTGATGTTTTGCCAAAAAGCGTT GGATATGGAACCCAATAATGTCAAAATTCATGAATGTTATGGAAATGTTT ATGCGGAGACAGGAGATGTTGGGAATGCAATGAAACATTTTAATGAAGCT GTTCGTTTAGAACCAGACACTGGTCATGTTAAATATTTATATCTTGGGCA AATTACTGAAGGCAGAGAAGCAGTTCAGCATTATGAAAAGGGTATTGTTA TCATGAAGGAAACTATTGAATATCAAAAGAATAACAAAGAAAAACGTGAT GATGAAAAGCCTCTTTCAAACGGCGATGTAGCCAATGTTTATTGTTCTCT TGCCGAAATTTTTATGACTGATTGTTGTATGGAAGATGATGCTGAAGAAC AATGTGAAAAGTATTGTAAACTAGCTGTTGAGACTGACGAAAAAAGTTTA GATGCTGCTGTCTCTATGTCGAACTTGTTGCTAAATCAAAGCAAAATGGA TGATGCTAAAAAAGCAACAGAGAAAGCTTTGTCATTGTGGACGGAGCTGT CAGCGAATATTGAAGAAGATTCTATTCCAGAGAATTTGTCTTATGAAGCC CGTGTGACTCTCATTAAGCTTTTGATTGAAGTTGAAATATACGATAAAGT TTCTCCCATTGTTGATCAACTTATTGAGGAAAACGAAGATGATATACGTA TTTGGTATTATCTTGGCTTAGCAAAATCATTGATGAAGGATACTGATAAT CCACGTTTTTATCTCGAGAAAGCTTTAGAGTTGATTGAGAAGACAGGTTT TCAGAATGATGATATGATAGCACACATTGAGCAATTATTGGTGGACTGTC CACCGGAAGATGAGATGGATGTTATAGAGGAGGGTGATGAAGATGAAGGC GACTTTGAAAATGAAAATGAAGGACAGATGGATGTCGAATAAATGCATAA TCCAGGTAGGTCCATCAAAGTATCACTTGTTACCTCAAAATTTGCTCTAT TTTCTTGCCAGGTATTGGAAAAAATCAGCAGGAAATATGATGCAGCTATT ATCATAAAATTGAAAATGGGAAAGAAAAAGAAGAGAGGAGGAAATAAGAA AAAAGGTGATGAAAACATTGCCATTGACAATGAAGCTGCCGAAAGTGAAA ATGTACAAGAAGAAAGCAAAGAGGAAAAGGATGAAACTGAAGAAGAAAAA TCTAAATTTACAGTCGAGGATCTAATGACAAGAGTTGAACAGTATCTTGA AAACTTTGAACATAATATGGCATTGATGTTTTGCCAAAAAGCGTTGGATA TGGAACCCAATAATGTCAAAATTCATGAATGTTATGGAAATGTTTATGCG GAGACAGGAGATGTTGGGAATGCAATGAAACATTTTAATGAAGCTGTTCG TTTAGAACCAGACACTGGTCATGTTAAATATTTATATCTTGGGCAAATTA CTGAAGGCAGAGAAGCAGTTCAGCATTATGAAAAGGGTATTGTTATCATG AAGGAAACTATTGAATATCAAAAGAATAACAAAGAAAAACGTGATGATGA AAAGCCTCTTTCAAACGGCGATGTAGCCAATGTTTATTGTTCTCTTGCCG AAATTTTTATGACTGATTGTTGTATGGAAGATGATGCTGAAGAACAATGT GAAAAGTATTGTAAACTAGCTGTTGAGACTGACGAAAAAAGTTTAGATGC TGCTGTCTCTATGTCGAACTTGTTGCTAAATCAAAGCAAAATGGATGATG CTAAAAAAGCAACAGAGAAAGCTTTGTCATTGTGGACGGAGCTGTCAGCG AATATTGAAGAAGATTCTATTCCAGAGAATTTGTCTTATGAAGCCCGTGT GACTCTCATTAAGCTTTTGATTGAAGTTGAAATATACGATAAAGTTTCTC CCATTGTTGATCAACTTATTGAGGAAAACGAAGATGATATACGTATTTGG TATTATCTTGGCTTAGCAAAATCATTGATGAAGGATACTGATAATCCACG TTTTTATCTCGAGAAAGCTTTAGAGTTGATTGAGAAGACAGGTTTTCAGA ATGATGATATGATAGCACACATTGAGCAATTATTGGTGGACTGTCCACCG GAAGATGAGATGGATGTTATAGAGGAGGGTGATGAAGATGAAGGCGACTT TGAAAATGAAAATGAAGGACAGATGGATGTCGAATAAATGCATAATCCAG GTAGGTCCATCAAAGTATCACTTGTTACCTCAAAATTTGCTCTATTTTCT TGCCAGGTATTGGAAAAAATCAGCAGGAAATATGATGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00013607-exon-sc0000170-1575043694:155133..155291 | TCONS_00013607-exon-sc0000170-1575043694:155133..155291 | Clytia hemisphaerica | exon |
TCONS_00013607-exon-sc0000170-1575043694:151212..154087 | TCONS_00013607-exon-sc0000170-1575043694:151212..154087 | Clytia hemisphaerica | exon |
TCONS_00013607-exon-sc0000170-1510915933:155133..155291 | TCONS_00013607-exon-sc0000170-1510915933:155133..155291 | Clytia hemisphaerica | exon |
TCONS_00013607-exon-sc0000170-1510915933:151212..154087 | TCONS_00013607-exon-sc0000170-1510915933:151212..154087 | Clytia hemisphaerica | exon |
TCONS_00013607-exon-sc0000170-1491911889:155133..155291 | TCONS_00013607-exon-sc0000170-1491911889:155133..155291 | Clytia hemisphaerica | exon |
TCONS_00013607-exon-sc0000170-1491911889:151212..154087 | TCONS_00013607-exon-sc0000170-1491911889:151212..154087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000170 | supercontig | sc0000170:151212..155291 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|