TCONS_00013343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013343
Unique NameTCONS_00013343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013343 ID=TCONS_00013343|Name=TCONS_00013343|organism=Clytia hemisphaerica|type=transcript|length=597bp
TGTTGAGCAGATTTGTGAAGTGTATCGTAGTTTGTCTTTATTGGACCATA
GACTGTTGCACTGGTGTTGAGTTCAATCAGTTCCTTTAGGTTTTCTGAGA
CAGTGCTAACTTCTGATATGCGTGATTGTAGTTGCTTTTTGCGTAATTTC
AAGTCATCATTTGTAACAGTTGTGATGGTGACGGTAAAGACTTTGGTGAG
ATATTCTATTGCCCGTGTAACTTCTTCAGCGATAAAGGTTGATTTTTGAG
AATTGACAGATTGAGTCTCTCTGGTAGTGGTAAGATCAATATCTTGAATT
TGTTTCGGAATAATTTGGACATAGGTAGCAACCTCATTAATTGTTGAAGA
GTATGGCTTACCATATTTTTGTTCGTAGTTTTCCAGAGAGTCTTGATGGT
CTTGGAGTAAGAAACGTAGCTCTCTATCTTTATCTCTGTACTTCTTGCGG
AGCGCCTGGATGTCAGCGATGCAACGTTTCACGACATCAGTCGATTGTTT
GATTAGAGGTGGAGCAAAGTCTTGAATGATGTCAAGGATTTCATCTTGAT
AGCCAATGAGCGAGAACAACAATGCTTTAACTTCTGGTTTACCGTCC
Run BLAST on NCBI

protein sequence of TCONS_00013343-protein

>TCONS_00013343-protein ID=TCONS_00013343-protein|Name=TCONS_00013343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
DGKPEVKALLFSLIGYQDEILDIIQDFAPPLIKQSTDVVKRCIADIQALR
KKYRDKDRELRFLLQDHQDSLENYEQKYGKPYSSTINEVATYVQIIPKQI
QDIDLTTTRETQSVNSQKSTFIAEEVTRAIEYLTKVFTVTITTVTNDDLK
LRKKQLQSRISEVSTVSENLKELIELNTSATVYGPIKTNYDTLHKSAQ
Run BLAST on NCBI

transcript from alignment at sc0000164:391986..392582

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013343 ID=TCONS_00013343|Name=TCONS_00013343|organism=Clytia hemisphaerica|type=transcript|length=597bp|location=Sequence derived from alignment at sc0000164:391986..392582 (Clytia hemisphaerica)
GGACGGTAAACCAGAAGTTAAAGCATTGTTGTTCTCGCTCATTGGCTATC
AAGATGAAATCCTTGACATCATTCAAGACTTTGCTCCACCTCTAATCAAA
CAATCGACTGATGTCGTGAAACGTTGCATCGCTGACATCCAGGCGCTCCG
CAAGAAGTACAGAGATAAAGATAGAGAGCTACGTTTCTTACTCCAAGACC
ATCAAGACTCTCTGGAAAACTACGAACAAAAATATGGTAAGCCATACTCT
TCAACAATTAATGAGGTTGCTACCTATGTCCAAATTATTCCGAAACAAAT
TCAAGATATTGATCTTACCACTACCAGAGAGACTCAATCTGTCAATTCTC
AAAAATCAACCTTTATCGCTGAAGAAGTTACACGGGCAATAGAATATCTC
ACCAAAGTCTTTACCGTCACCATCACAACTGTTACAAATGATGACTTGAA
ATTACGCAAAAAGCAACTACAATCACGCATATCAGAAGTTAGCACTGTCT
CAGAAAACCTAAAGGAACTGATTGAACTCAACACCAGTGCAACAGTCTAT
GGTCCAATAAAGACAAACTACGATACACTTCACAAATCTGCTCAACA

Coding sequence (CDS) from alignment at sc0000164:391986..392582

>TCONS_00013343 ID=TCONS_00013343|Name=TCONS_00013343|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000164:391986..392582 (Clytia hemisphaerica)
GACGGTAAACCAGAAGTTAAAGCATTGTTGTTCTCGCTCATTGGCTATCA
AGATGAAATCCTTGACATCATTCAAGACTTTGCTCCACCTCTAATCAAAC
AATCGACTGATGTCGTGAAACGTTGCATCGCTGACATCCAGGCGCTCCGC
AAGAAGTACAGAGATAAAGATAGAGAGCTACGTTTCTTACTCCAAGACCA
TCAAGACTCTCTGGAAAACTACGAACAAAAATATGGTAAGCCATACTCTT
CAACAATTAATGAGGTTGCTACCTATGTCCAAATTATTCCGAAACAAATT
CAAGATATTGATCTTACCACTACCAGAGAGACTCAATCTGTCAATTCTCA
AAAATCAACCTTTATCGCTGAAGAAGTTACACGGGCAATAGAATATCTCA
CCAAAGTCTTTACCGTCACCATCACAACTGTTACAAATGATGACTTGAAA
TTACGCAAAAAGCAACTACAATCACGCATATCAGAAGTTAGCACTGTCTC
AGAAAACCTAAAGGAACTGATTGAACTCAACACCAGTGCAACAGTCTATG
GTCCAATAAAGACAAACTACGATACACTTCACAAATCTGCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007457XLOC_007457Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013343-proteinTCONS_00013343-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013343-exon-sc0000164-1491911889:391986..392582TCONS_00013343-exon-sc0000164-1491911889:391986..392582Clytia hemisphaericaexon
TCONS_00013343-exon-sc0000164-1510915933:391986..392582TCONS_00013343-exon-sc0000164-1510915933:391986..392582Clytia hemisphaericaexon
TCONS_00013343-exon-sc0000164-1575043694:391986..392582TCONS_00013343-exon-sc0000164-1575043694:391986..392582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000164supercontigsc0000164:391986..392582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.36951	0.528775	0.708564	0.655523	0.522508	0.38976	0.352672	0.220111	0.59437	0.572653	0.111896	0.443637	0.662487	0.341873	0.259606	0.307625	0.286707	0.211067	0.0972001	0.508564	0.380071	0	0.419362	0.226125	1.17807	0.613315	0.125379	0	0.348185	0.252536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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