TCONS_00013257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013257
Unique NameTCONS_00013257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013257 ID=TCONS_00013257|Name=TCONS_00013257|organism=Clytia hemisphaerica|type=transcript|length=333bp
CTTGGAATCAAAGACGACTAAGATATAGCGAGATTTCGAACAACTGTCAA
ATGTTTTGCAAGTCGTTCACCGAGTGGCTTGGCATTTCCGATGATTCATG
GACTTTCGAAGATGTTTACAGAGTGGGTTTGGCTATTGGTGGGGCTGTAT
TGGGCTATTTATTTCGGAGATAGATATTTTTTTCTATATAAAAAGTTGAT
ATCTCAGGGATTGTTCATGGTATAGTTTTTGATTGGTCCATTTTTCATCT
ATTCATTAAAAGAATCATTATATAGATGATGATGATGCATTATCTATCAA
TCAGGCGATGACAGTAGGGAGATTTGATTCGAG
Run BLAST on NCBI

transcript from alignment at sc0000163:449636..454717-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013257 ID=TCONS_00013257|Name=TCONS_00013257|organism=Clytia hemisphaerica|type=transcript|length=5082bp|location=Sequence derived from alignment at sc0000163:449636..454717- (Clytia hemisphaerica)
CTTGGAATCAAAGACGACTAAGGTAACAGTGAGATCGAGCTCTAGTTTAG
ATAGCCCACTTTTTGCCCCCCCCGGGGGGGGGGGGACTAGGGCAAGAGGG
GTTACGGGGAGGCTCCGCTGGTCAGGGGACCTTTTTTAACCCCCCCGGGC
CCCGGGGGGGGGGGGGACTAGGGCAAGATGGGTTACGGGGATGCTCCGCT
GGTCAGGGTACCTTTTTTAACCTCCACGAGTCCCAGGTAGGGTCGCAGAA
AAACCAAAATAGAAAAATCAGTCCCTCGTAGGGTGCCTATTTTTGGAAAA
TTTGGGAGAAAAGTAGAAAATTTGAGAACATTTTGGGATTTCAGTCCCAT
TCAGGGTCACTTTTTTCGCAAATTTCGAGTCCCACGTAGTGTCCATTTTT
CGAACCTCAGCGGAGCACCCCAGTCGGTCGACAAGGGTAGTACCCCCCCC
GGGTTTTTGCCCTGCCTATTTTGATTGTGAATTACTCTGAGGTCCGGAAT
AATAGGGGGGAGGTCTGAATAAAAGGGGGGGTCTAAAGTTTTTGCAAAAT
ATAATAAACGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCT
ACTTTCATGCAAAAAATCAGAAAAAATTAATGATCCAATTTTTCACAAAG
TCCAAAAAACCCGTTTTTTAGCCGTTTTTTGGCCCAAATTTGCCGCAAAA
TTTTTTTTTTCGAAAATCGGGCTCCATCACATTTTGGCCACTACCGTTTT
GCACCTTTGTACCAAAAATCAAATGATTCCTATGATTCAATCTCGAGAAA
AGCTGGTAACGAACGGACGGACGGACNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCGAAAGATTTTCGAAAATTAATAAG
CGGGTGGGGGCGTCTATTCGGGAGGGCTCTGTGGCGTGTTATACCAGTGA
ACTGTTATCAGATAGAATAATATCTCACTTTGGCTTCTTCGTCTTCTATT
CAGATTCCCTTTGTTAAAAGTGATTATTGGTTGTAAAAATAGTTTCTCAA
AATCTGATGCGTGGATAGAAATCTCTTTATAAGGGTATGTTTGCACGGTA
TTTTTTCTCAGTTACGAAATTTTTAGTTTTGGAAAACGATTGATATTTAC
AAATCTATTTTACCTTACAATCTAGAATTTTAGGAGCTGAAATTTAGTGA
TTCCATCAATTTTAACTCTTAAAATTAAAAAATCAATTTTAGTCTATATT
TCCGAATAACTAATTTAGGTGAAAACTTGACACCCAAATTTCTTTTCTTA
GAAGTGCGTTTTCAAATAGTTTTCAACACTGGTGAATCTATAAAATGAGC
TGATTTCAAATATTTAATTCTTATTGGTCAGCCGAAGCTGAGCATTCAAA
TAGGTAAAATTTTCCACCATAAGACGGCAAAAAAAAAATCCGATTTTCCG
ATCTCACTTTGATTTCTAAACTTTCTTCCGATCGGGTTAACTTTTTGGGT
ACTTTTAGCGTGCGTTGTTTTTACAGATCATAATGTAGTGTTTCCAAGAT
GGCGGCTCAATTTAGATGTGATAAGTCAGTACAGTGTTGTACCAAAGTAT
TTCCAGTGTAAATCTGTTGCAAGCTTCAATTTCTGTCATTTATTTTTTTA
ACTCGGCAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTTCCAGTATAA
ATCTGTTGCAAGCTTCAATTTCTGTCATTTATTTTTTAACTCGGCAAATC
AAACACATGATTTTCATCAAGGGGACTCTTTTTCTATATCTCTTAAAGCT
TTAAAGCCGTTTGCTCAAGTTTTTGTTTATATTGAATTTTCTGATACTTT
TTATTGCTGCTTTTTAATAGTTTTTGCAATAAAAACATATTTTTCTTGTT
TGCCTCTAGGGGGATCGATGGTGTTATAATGTTATTGGAATTTGATAAAG
TCCGGATGCAATCGTGCTTTTTTGGACTTGGACGTGTTTGTTTGTGATAA
GGCGAATCGCAAAAAATTGTTCGGTCGAAAATATTTTTCTGTTAAGAAGC
AGCTACATCTTGTTGAAAGGGAATCCGTGTGGACTGATCCGAATTTTAAA
ATTGAGAAACCGTGGAAAAACTGGTGTTTTCGGTTTACACTCCATTAGCA
TTCGATTTGAAAACTTGTAAACACAGAGCGTGCAGAGGTCGACAGTGGAA
ATCCAGCAAAGCAGCGGAAAAGCTTTCCGACTACTCTCCAACTCTACCTG
CTGACCATAAATCAGGGTCGGTCAGATGACGGGAACCAAATGAAATGATG
ACATCACATCTCCTTATTATTGGACTTGCAAAATTATGACAAATGGTCTT
TGGAATTTGATCAATTATATCAATATTAATATATACAGTTCTTGTTGAAA
TTGATCAAACTATTTTTCACGCAGTTCCGGACGCAGATTGTGCTTTTCTA
ACCTTTTCTAACCTTGGCGCACATTTTGACTGAATGATGGAATGGAATGA
ATGGCCATAACAGTTTATACATCATACATATCTCTTATCAGACTTGCAGA
AAGCGGACTGCAGAAAGTTATGAAAAATGGTTTCTAGAATTTAATGAATT
ATACGGTCAAGTTACCCAACATGCACACTCTCGTCACAACTTGCACAGTC
ATAACAAACAGATCCATCTGGTCTTCATTTAACATTGTTTTAAAGTTTAA
AAAACACTGCCAGTGCTTGGCACAGAAGAGTGGACTCCCAGTTGAAATTA
ATTGCTACTCCGCTGCACTGTTGAATTTATTTATTATGGTAGTGTGTTTA
CTCCGCTAAGGCGGTAAAGCGATTGCCCAAATTCATAGACCAATCAAAAG
GGAGTTTAAAGCAAAATGGGGGAAAAATGTGCTTCCCTGTATAGTTAGGA
ATTTTAAGTTTAGATTTCGATTATCATTTGCGACCAGCAAAGTCTTCAAG
ATGGTAGTGTGCATGCTGTGTAACTTGACGGCACTAAACTACAAAATTTA
TTTACGAAGACTGGATGTAAATTATGTTTTTCTGACCTTGCCAAATTTTG
GCTTTGACTGAATAGCAGTCAGTTTTTACGTACCTCATTGGCCTTGTAGA
CAACTGACAAATGGTTTCTGTAATTTGACCAAGTCTACCAAAATACAGTT
CCTGTTGATATGTTATAAATATGAACTGCGTTTTGCAAAGATTTTGATGC
AAATTGTGTTTTTCTGGAGTTGCGCTTAAACAAAAAGTACAGTTTCTATA
TATTTGATGGATATCTTTATTTTGGTTCTGACATTTTGGCAATTTTCTAA
TTTATTTCTAGATAACACTTTGGTCAGATATGGATATTGTCTACAAAAAA
ATAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAATTAACAAAAAGT
TTTAATTACACTATGTTTCTCTTTTTTATAGTAATGAACTATAGCTTAAT
TGTTTGATGTCGTAGAAACAGTGCTACAATGCTAAAGAGAAGTATACTTT
GATCTTCTGGTAGGGGGGGTTCGGTTGGAGGAGCTCTCAGGCTTGTTTTA
AATAGTTTTAAATCAAGTTATCAAATGTTTCACGTTTTGTACATTATTCA
ACATTTTTAGTCTTCAGTACATCTCTTACATCTGTTAACCCACTTATTAA
AGCTATCTAGCTAAGCTCTATTGGCTGACCTTCCAGCCTCGGCTGGTTTA
TTTGCATTGAGATGGACAAAAATACTCGAAAATGGCGAAAATAAGAGCAT
ATTAAGAACACTTTTAGGTTAAAACTCAAAATTAAGAACATCCAAGGGTT
TAAAAAATGTTGGATGTTATTATAAAAAACACTGTATTACCTGTAAAAGT
TCGAATGTTTTTCGTTCACAGATATAGCGAGATTTCGAACAACTGTCAAA
TGTTTTGCAAGTCGTTCACCGAGTGGCTTGGCATTTCCGATGATTCATGG
ACTTTCGAAGATGTTTACAGAGTGGGTTTGGCTATTGGTGGGGCTGTATT
GGGCTATTTATTTCGGAGATAGATATTTTTTTCTATATAAAAAGTTGATA
TCTCAGGGATTGTTCATGGTATAGTTTTTGATTGGTCCATTTTTCATCTA
TTCATTAAAAGAATCATTATATAGATGATGATGATGCATTATCTATCAAT
CAGGCGATGACAGTAGGGAGATTTGATTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007400XLOC_007400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013257-exon-sc0000163-1575043694:454696..454717TCONS_00013257-exon-sc0000163-1575043694:454696..454717Clytia hemisphaericaexon
TCONS_00013257-exon-sc0000163-1575043694:449636..449946TCONS_00013257-exon-sc0000163-1575043694:449636..449946Clytia hemisphaericaexon
TCONS_00013257-exon-sc0000163-1510915933:454696..454717TCONS_00013257-exon-sc0000163-1510915933:454696..454717Clytia hemisphaericaexon
TCONS_00013257-exon-sc0000163-1510915933:449636..449946TCONS_00013257-exon-sc0000163-1510915933:449636..449946Clytia hemisphaericaexon
TCONS_00013257-exon-sc0000163-1491911889:454696..454717TCONS_00013257-exon-sc0000163-1491911889:454696..454717Clytia hemisphaericaexon
TCONS_00013257-exon-sc0000163-1491911889:449636..449946TCONS_00013257-exon-sc0000163-1491911889:449636..449946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000163supercontigsc0000163:449636..454717 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.286105	0	0.647886	0	0	0	0.367833	0.688722	0	0.298635	0.289863	0.762178	1.14168	2.17368	2.11198	1.39475	2.57734	4.40281	1.21654	0	0.553245	0.40478	0.328042	0	0	0	0.784614	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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