TCONS_00013148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013148
Unique NameTCONS_00013148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013148 ID=TCONS_00013148|Name=TCONS_00013148|organism=Clytia hemisphaerica|type=transcript|length=1560bp
ATGACACTGAACAATCAATTTACAGACTCTAATAATGACATACAGACACC
TTTGACTGTTAAAGTTTATAAAAAACGATGGCTCATATTGTTCATATTCT
CTATAAATTCGATGGCCAACGCAATTTTGTTCACATGTATTACTGCTATT
AACAAAATTGTTTGCAAGTATTACCATATCTCACCTGAGTTGACTGACTG
GGCCGGAAATATTTTTGACTTAGTTTACATCCTGATTGCCCTCCCATCAG
CTTACTGTATGGACAACTTTGGAATCAAAACACTTTTGATAATTGGATCC
AGTTTAAATGGAGTTTGTGTGTGTCTTCATCTAGCTGGTACAACACAGCA
AGggatttggtttgttttggtgggTCAACTTACCGCTGGCTTTTCAGTAG
CAGCAGCTCTTCAAATTCCAACACAATTATCAATGGTGTGGTTTCCAGAA
CATGAGTATGCAAAAGCTACAAGTGTATCATTGGGATTTAATGTTTTGGG
ATTGGCAATTGGTTTTTTGCAGCCTTCCATTATGGTTCCGGATAGTGAAA
ATATGAATGAAATTTATGATGGATTATTGAAAGTGAATATCTCACATGTT
GCTCTCTAAGCAGTTTGTTTGATTtcagcttatttatttttcgatgaaaa
ACCTCCATTGCCACCCTCGTATGCCAAAGCTGTTCGTGATAGTTCAAGCA
TTAATGGAGACGCTGGTTCGCCTGGCTTCAAAGAATCCTTGAAAATGCTT
TTcacaaacaaaaatttcatgttaCTTTGTTGTGCTTATGGCGTACAATT
TGGTATATATAATCTCTTTCTCACGTGCCTTGATGAAATGACAAATCACT
TAACAAGTTCTAAAAATATTGGCTGGTTAGGCTTCTCAGGCAACATTGCA
AGTATAATTGGAATTCTTGGCTTTGCTTCTATTGTTGACAAATACAAATG
TTACAAGAAAATGatgtttttcctcttttttatgCAGATTCTTTGCTGGA
TAGCATTTAGTTCTGTGATATTGTATTGGAAAACAACATTAGTATTGTTT
GTGTCTTACATCGTGCTGTGTCTTTTCGGTGTCCCCTTCTTGTCAATTGG
CTTATCTTATTCCGCTGAACTAACTTACCCAATATCAGAAGGACTTTCAA
GTGCTATTTGTTTGGTGTTTGGAAATACCTTTGGTTTTATTATGATAATT
ACACTGGGCAAGTTGATCGATAATAATCATGCATTTTTGATGTGTGCAAT
TGTTGCTGGATTTTATGTTATTGGATTTCTCTTATGTTTTTTCATCaaag
aagatttgaaaaaaatgaatatcgaATCAGAACAACCTGATCCTGTTACC
ATTGGGGCTGAAAATACTTAAATTGATTCTGTTTATAATTCTGTTCAATC
AAACTCAAAGAGAGTCTTTTTTGTTGTAGCAATGCCAGTTTAAAATGGAT
GCCTAAGCATGTGTTGTTTATTAGAAAGTTTAAACCTTTGTACGGGGTCC
GATCGTAGTTATAAAGTCAATCCATCTGAAGTTTCACCTAACAAATAATG
TATGTCCATT
Run BLAST on NCBI

transcript from alignment at sc0000162:208908..210522-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013148 ID=TCONS_00013148|Name=TCONS_00013148|organism=Clytia hemisphaerica|type=transcript|length=1615bp|location=Sequence derived from alignment at sc0000162:208908..210522- (Clytia hemisphaerica)
ATGACACTGAACAATCAATTTACAGACTCTAATAATGACATACAGACACC
TTTGACTGTTAAAGTTTATAAAAAACGATGGCTCATATTGTTCATATTCT
CTATAAATTCGATGGCCAACGCAATTTTGTTCACATGTATTACTGCTATT
AACAAAATTGTTTGCAAGTATTACCATATCTCACCTGAGTTGACTGACTG
GGCCGGAAATATTTTTGACTTAGTTTACATCCTGATTGCCCTCCCATCAG
CTTACTGTATGGACAACTTTGGAATCAAAACACTTTTGATAATTGGATCC
AGTTTAAATGGAGTTTGTGTGTGTCTTCATCTAGCTGGTACAACACAGCA
AGGGATTTGGTTTGTTTTGGTGGGTCAACTTACCGCTGGCTTTTCAGTAG
CAGCAGCTCTTCAAATTCCAACACAATTATCAATGGTGTGGTTTCCAGAA
CATGAGTATGCAAAAGCTACAAGTGTATCATTGGGATTTAATGTTTTGGG
ATTGGCAATTGGTTTTTTGCAGCCTTCCATTATGGTTCCGGATAGTGAAA
ATATGAATGAAATTTATGATGGATTATTGAAAGTGAATATCTCACANTAG
TGAAAATATGAATGAAATTTATGATGGATTATTGAAAATGAATATCTCAC
ATGTTGCTCTCTAAGCAGTTTGTTTGATTTCAGCTTATTTATTTTTCGAT
GAAAAACCTCCATTGCCACCCTCGTATGCCAAAGCTGTTCGTGATAGTTC
AAGCATTAATGGAGACGCTGGTTCGCCTGGCTTCAAAGAATCCTTGAAAA
TGCTTTTCACAAACAAAAATTTCATGTTACTTTGTTGTGCTTATGGCGTA
CAATTTGGTATATATAATCTCTTTCTCACGTGCCTTGATGAAATGACAAA
TCACTTAACAAGTTCTAAAAATATTGGCTGGTTAGGCTTCTCAGGCAACA
TTGCAAGTATAATTGGAATTCTTGGCTTTGCTTCTATTGTTGACAAATAC
AAATGTTACAAGAAAATGATGTTTTTCCTCTTTTTTATGCAGATTCTTTG
CTGGATAGCATTTAGTTCTGTGATATTGTATTGGAAAACAACATTAGTAT
TGTTTGTGTCTTACATCGTGCTGTGTCTTTTCGGTGTCCCCTTCTTGTCA
ATTGGCTTATCTTATTCCGCTGAACTAACTTACCCAATATCAGAAGGACT
TTCAAGTGCTATTTGTTTGGTGTTTGGAAATACCTTTGGTTTTATTATGA
TAATTACACTGGGCAAGTTGATCGATAATAATCATGCATTTTTGATGTGT
GCAATTGTTGCTGGATTTTATGTTATTGGATTTCTCTTATGTTTTTTCAT
CAAAGAAGATTTGAAAAAAATGAATATCGAATCAGAACAACCTGATCCTG
TTACCATTGGGGCTGAAAATACTTAAATTGATTCTGTTTATAATTCTGTT
CAATCAAACTCAAAGAGAGTCTTTTTTGTTGTAGCAATGCCAGTTTAAAA
TGGATGCCTAAGCATGTGTTGTTTATTAGAAAGTTTAAACCTTTGTACGG
GGTCCGATCGTAGTTATAAAGTCAATCCATCTGAAGTTTCACCTAACAAA
TAATGTATGTCCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007344XLOC_007344Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013148-exon-sc0000162-1575043694:209928..210522TCONS_00013148-exon-sc0000162-1575043694:209928..210522Clytia hemisphaericaexon
TCONS_00013148-exon-sc0000162-1575043694:208908..209872TCONS_00013148-exon-sc0000162-1575043694:208908..209872Clytia hemisphaericaexon
TCONS_00013148-exon-sc0000162-1510915933:209928..210522TCONS_00013148-exon-sc0000162-1510915933:209928..210522Clytia hemisphaericaexon
TCONS_00013148-exon-sc0000162-1510915933:208908..209872TCONS_00013148-exon-sc0000162-1510915933:208908..209872Clytia hemisphaericaexon
TCONS_00013148-exon-sc0000162-1491911889:209928..210522TCONS_00013148-exon-sc0000162-1491911889:209928..210522Clytia hemisphaericaexon
TCONS_00013148-exon-sc0000162-1491911889:208908..209872TCONS_00013148-exon-sc0000162-1491911889:208908..209872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000162supercontigsc0000162:208908..210522 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50791	1.04636	0.566006	0.307444	4.08161	2.84596	2.44839	3.5137	1.77271	2.91781	1.42146	1.22635	2.94739	2.99296	3.58504	3.82129	2.84397	2.25	3.98132	3.32213	1.60642	1.16618	2.19784	3.01281	1.70176	2.4823	2.86651	1.96653	1.95135	1.97404
Blast
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BLAST of TCONS_00013148 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 7.867e-53
Identity = 130/429 (30.30%), Postives = 222/429 (51.75%), Query Frame = 1 
Query:   58 VKVYKKRWLILFIFSINSMANAILFTCITAINKIVCKYYHISPELTDWAGNIFDLVYILIALPSAYCMDNFGIKTLLIIGSSLNGVCVCLHLAGTTQQGIWFVLVGQLTAGFSVAAALQIPTQLSMVWFPEHEYAKATSVSLGFNVLGLAIGFLQPSIMVPDSENMNEI--YDGLLKVNISHVAL*AVCLISAYLFFDEKPPLPPSYAKAVRDSSSINGDAGSPGFKESLKMLFTNKNFMLLCCAYGVQFGIYNLFLTCLDEMT--NHLTSSKNIGWLGFSGNIASIIGILGFASIVDKYKCYKKMMFFLFFMQILCWIAFSSVILYWKTTLVLFVSYIVLCLFGVPFLSIGLSYSAELTYPISEGLSSAICLVFGNTFGFIMIITLGKLIDNNHAFLMCAIVAGFYVIGFLLCFFIKEDLKKMNIESE 1332
            +KV ++RW ++ +FS  SM N+  +    +IN I   +Y +S    DW    + L YI + LP A+ ++ FG++T+ + GS+LN +   + L           +VGQL    +    L +P++++ VWF  +E + A SV++  N LG+AIGFL P ++VP+ E+ +E+  +  ++   I  VA   + LI   + F EKP  PPS A+++  + + + DA   G   S+  LF N NF+LL   YG+  G +    T L+ M   ++     N G +G +  IA ++G +     +D+ K YK+    ++ M ++  + + +  L      V+F++   +  F   +L +G  ++ ELTYP SEG+SS +  +    FG I  I+ G++IDN         +  F  +G  L  FIK DL++     E
Sbjct:   78 IKVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRDELAYHISIMFYIIGGVA--TLLLILVIIVFKEKPKYPPSRAQSLSYALT-SPDASYLG---SIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVY-TFTLNLGHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFLCVFLTLGAALTAFIKADLRRQKANKE 499
The following BLAST results are available for this feature:
BLAST of TCONS_00013148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC27.867e-5330.30Feline leukemia virus subgroup C receptor-related ... [more]
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