|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001248 ID=TCONS_00001248|Name=TCONS_00001248|organism=Clytia hemisphaerica|type=transcript|length=2857bpRun BLAST on NCBI protein sequence of TCONS_00001248-protein >TCONS_00001248-protein ID=TCONS_00001248-protein|Name=TCONS_00001248-protein|organism=Clytia hemisphaerica|type=polypeptide|length=370bp MFHRILRSLYKEQQRRANRLYSLWFTSNGNGVQKAITNAEKLVGYPTSYSRun BLAST on NCBI transcript from alignment at sc0000007:1289580..1295675- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001248 ID=TCONS_00001248|Name=TCONS_00001248|organism=Clytia hemisphaerica|type=transcript|length=6096bp|location=Sequence derived from alignment at sc0000007:1289580..1295675- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:1289580..1295675- >TCONS_00001248 ID=TCONS_00001248|Name=TCONS_00001248|organism=Clytia hemisphaerica|type=CDS|length=3339bp|location=Sequence derived from alignment at sc0000007:1289580..1295675- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001248 vs. Swiss-Prot (Human)
Match: DLP1 (Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2 PE=1 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 1.960e-40 Identity = 100/255 (39.22%), Postives = 160/255 (62.75%), Query Frame = 3 Query: 126 KAITNAEKLVGYPTSYSSLKYLAEEEPANFLGLAKKLVGSGHPLLSTARDLLSQDPXXXXXXXXXXXXXXSKAAG-SGDDLDVLQSELVNGIHQKQRAIADTTELINTAFLVHRSMVDIVQSQSN----QTLNLGNKLSVLGGDFLLAKASLELGKLENTKVVEMVSQAIGHLSEGATIERTHSS----FDD--LKSWEDFIFLLRGSLLAHSCRSAVQVVGHPEKVCEDAYNFGMNLALAQRCVEDIEVYQNNK 857
+ ++ AEK+VGYPTS+ SL+ L +E +N +KLVG+ HPLL+TAR L+ D L GL VLL+SKAAG S + ++V+GI+ QR++A+ TELI+ A LVHR +V++ + QS+ + + GNK+++L GDFLLA A L L+NTKVVE+++ A+ L +G E + S DD + +W++ FL G+LLA SC++A+++ H +V A+ +G ++A++ + D++ + K
Sbjct: 51 QVVSEAEKIVGYPTSFMSLRCLLSDELSNIAMQVRKLVGTQHPLLTTARGLV-HDSWNSLQLRGLVVLLISKAAGPSSVNTSCQNYDMVSGIYSCQRSLAEITELIHIALLVHRGIVNLNELQSSDGPLKDMQFGNKIAILSGDFLLANACNGLALLQNTKVVELLASALMDLVQGVYHENSTSKESYITDDIGISTWKEQTFLSHGALLAKSCQAAMELAKHDAEVQNMAFQYGKHMAMSHKINSDVQPFIKEK 304 The following BLAST results are available for this feature:
BLAST of TCONS_00001248 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
TCONS_00001248 (transcript) - C. hemisphaerica
|
Overview
|
