TCONS_00001241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001241
Unique NameTCONS_00001241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001241 ID=TCONS_00001241|Name=TCONS_00001241|organism=Clytia hemisphaerica|type=transcript|length=1270bp
ATACTATACATTCTGTAACTAGCACCATTCACCGTCGATGTGCCCTATCT
gtgaattgaataatcgagcaTATCTGACCTCCTTTGCAATTTATCTCAAC
TTGCTACGTGAAAATATTCCAGTGTGGCCAGCGACCCATCATTTTGCTCG
CATGGGGATTTCAAAAACGGACAGTTTTCATTTCAAGGAGATTTTTGCAG
CATGACGCGGCACGCGTGCTTACAGATTTTGATGAATgagaaaacaaaca
aagaaagtaCTTTTTTCTCAGCCAATCAGATGAGTTTACAAGGATCAGAG
GAAAGGGTATAAAAGCCGTACTCTGTCAAGTAATTTTCATTCAATCGAGT
ACTTCACTAGAAACCAATCGGTACATTTTGTTGTGGCATTTTTTTTCTCG
GACACGAAAGGAAAACCTTCGAAACATCAACATGACGACATTCATCAGCT
TCACTCAAATCTTCTTCGTACTTTTCGCCATAACACAATCAACAACAGCT
TCATCAATTGACTGTTTACAAAAGTGTTTCACAGACCACGACACTTGTAT
CCATAGTGCCACCTTATTACCCGACATTCGTAATTGTTCGGAGAAAGTGA
ACCGATGCCGTACGTCTTGTGTCGTTCGCCGAAAACGGACTTTGCATCCA
AGACACCTTGCTTTCTCTAGAGAAGAGCTTTCACAACAGGCTTTGAGACA
TCAATGTATGCAAACTTGCAAAGCCGGCTTCAAAGGATGCAACAAGAAAG
CCGTGGGATCAGAATTATTCTTATGTTTTCGTAACTATAGAAACCAATGC
CGCACAAAGTGTTCTTTCTATAAGAAGACATTTGAAAGCAACAAGCAAAG
AAAGCTTGgggaaaagtttcaaaaaatcatcaaaggAAAACAGAGGTAAT
CATCCTGCCTCTGCAAAAACATTTAGAACattatttaaaatttaatttat
tttacagTATTATATGAAAAACTAAAACTTGACAAACATAGATGACAAGG
AGCTAGCTTCTCAGGCTAGTTTCTACTATATTGCTATTTAAATATGaaat
ttctatatatttttgtaaatttttgcaaatttttgctactttaaaatatt
tttatttgaaagagtttattttatttataactTAAGAAAAGTTAGTATTA
GTTTATAGAGAAATTTTGGACACGTTGGTGTAAAACTAGTTTGCTGGCTT
GACTTTTTTTCAGCCTTTATTATACGTTGATCAATTTTTTGTTATATAAC
TATGATATATTATAGTCAAG
Run BLAST on NCBI

protein sequence of TCONS_00001241-protein

>TCONS_00001241-protein ID=TCONS_00001241-protein|Name=TCONS_00001241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MTTFISFTQIFFVLFAITQSTTASSIDCLQKCFTDHDTCIHSATLLPDIR
NCSEKVNRCRTSCVVRRKRTLHPRHLAFSREELSQQALRHQCMQTCKAGF
KGCNKKAVGSELFLCFRNYRNQCRTKCSFYKKTFESNKQRKLGEKFQKII
KGKQR
Run BLAST on NCBI

transcript from alignment at sc0000007:1186214..1188305-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001241 ID=TCONS_00001241|Name=TCONS_00001241|organism=Clytia hemisphaerica|type=transcript|length=2092bp|location=Sequence derived from alignment at sc0000007:1186214..1188305- (Clytia hemisphaerica)
ATACTATACATTCTGTAACTAGCACCATTCACCGTACGTATGAGAATATC
AATAGGTTATCTGGAAAACTATCTTTCCATGACTGAGTTTTACTACTTTG
CACCCGACTATACCGTCTGTTTTTCGTAAAAAAATTGCCTGACTAAATCA
TTACGTCTTTATTTTTTTGTCTAATCCATTGACCTCGTGGAAACGGGCTG
TGAGGAAATCTTCACCTTATGTAACTGGCCGTTTGATATTACAGATTTTT
CTATCATTCTTATTTTTACAAATTGCAGTCTTAGGAAAGGGGAATATTAC
ATAAATTGAATAGTTGTCCCTTTAAATTGATATCTTAATAAAGTTATTGG
GTTACGTTGGAAATACGAAAGTAAAACATATCTCCTACCATTCGAAGGTG
ACGAAACCCTTTAGCCTATTCAAACCTTGATGCGACGCTCTCGGATGTTT
TGGCTGCCATTTTTCATGTTTTTGCCAAAACTCTCATAAGTCATTCTCTA
CTTTGAAGAGGATAGAATATTTTTCACGCTTAGTGATGTAAAAAGAGCCT
ACATATAATTACGTCACTACGCACTTGTAAGCTTAGAATGATTTTCTCTC
CTCTTAAAGCAGTATGCATGTGCGATTTTAAATTGAATTTCTTTTGCATA
GGTCGATGTGCCCTATCTGTGAATTGAATAATCGAGCATATCTGACCTCC
TTTGCAATTTATCTCAACTTGCTACGTGAAAATATTCCAGTGTGGCCAGC
GACCCATCATTTTGCTCGCATGGGGATTTCAAAAACGGACAGTTTTCATT
TCAAGGAGATTTTTGCAGCATGACGCGGCACGCGTGCTTACAGATTTTGA
TGAATGAGAAAACAAACAAAGAAAGTACTTTTTTCTCAGCCAATCAGATG
AGTTTACAAGGATCAGAGGAAAGGGTATAAAAGCCGTACTCTGTCAAGTA
ATTTTCATTCAATCGAGTACTTCACTAGAAACCAATCGGTACATTTTGTT
GTGGCATTTTTTTTCTCGGTAAGTTCCTGTTTCAGCATTTCAATCTGTAG
TATATGAAATTTTGTGTTATGTTGTCATGAGGTTACTGATAAGACTACCA
ACAATTTGACCAATCCCTAAATGTTTCTTCTCCACCTTCACCAGCCGTCA
TTCTCTTTTGGTCTTAAAACTGTTGTCTTGGTAACCGTTCTTAAAAACTT
TTTACTTTTGTTTTCCTTACAGGACACGAAAGGAAAACCTTCGAAACATC
AACATGACGACATTCATCAGCTTCACTCAAATCTTCTTCGTACTTTTCGC
CATAACACAATCAACAACAGCTTCATCAATTGACTGTTTACAAAAGTGTT
TCACAGACCACGACACTTGTATCCATAGTGCCACCTTATTACCCGACATT
CGTAATTGTTCGGAGAAAGTGAACCGATGCCGTACGTCTTGTGTCGTTCG
CCGAAAACGGACTTTGCATCCAAGACACCTTGCTTTCTCTAGAGAAGAGC
TTTCACAACAGGCTTTGAGACATCAATGTATGCAAACTTGCAAAGCCGGC
TTCAAAGGATGCAACAAGAAAGCCGTGGGATCAGAATTATTCTTATGTTT
TCGTAACTATAGAAACCAATGCCGCACAAAGTGTTCTTTCTATAAGAAGA
CATTTGAAAGCAACAAGCAAAGAAAGCTTGGGGAAAAGTTTCAAAAAATC
ATCAAAGGAAAACAGAGGTAATCATCCTGCCTCTGCAAAAACATTTAGAA
CATTATTTAAAATTTAATTTATTTTACAGTATTATATGAAAAACTAAAAC
TTGACAAACATAGATGACAAGGAGCTAGCTTCTCAGGCTAGTTTCTACTA
TATTGCTATTTAAATATGAAATTTCTATATATTTTTGTAAATTTTTGCAA
ATTTTTGCTACTTTAAAATATTTTTATTTGAAAGAGTTTATTTTATTTAT
AACTTAAGAAAAGTTAGTATTAGTTTATAGAGAAATTTTGGACACGTTGG
TGTAAAACTAGTTTGCTGGCTTGACTTTTTTTCAGCCTTTATTATACGTT
GATCAATTTTTTGTTATATAACTATGATATATTATAGTCAAG

Coding sequence (CDS) from alignment at sc0000007:1186214..1188305-

>TCONS_00001241 ID=TCONS_00001241|Name=TCONS_00001241|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0000007:1186214..1188305- (Clytia hemisphaerica)
ATGACGACATTCATCAGCTTCACTCAAATCTTCTTCGTACTTTTCGCCAT
AACACAATCAACAACAGCTTCATCAATTGACTGTTTACAAAAGTGTTTCA
CAGACCACGACACTTGTATCCATAGTGCCACCTTATTACCCGACATTCGT
AATTGTTCGGAGAAAGTGAACCGATGCCGTACGTCTTGTGTCGTTCGCCG
AAAACGGACTTTGCATCCAAGACACCTTGCTTTCTCTAGAGAAGAGCTTT
CACAACAGGCTTTGAGACATCAATGTATGCAAACTTGCAAAGCCGGCTTC
AAAGGATGCAACAAGAAAGCCGTGGGATCAGAATTATTCTTATGTTTTCG
TAACTATAGAAACCAATGCCGCACAAAGTGTTCTTTCTATAAGAAGACAT
TTGAAAGCAACAAGCAAAGAAAGCTTGGGGAAAAGTTTCAAAAAATCATC
AAAGGAAAACAGAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000664XLOC_000664Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001241-exon-sc0000007-1575043694:1188273..1188305TCONS_00001241-exon-sc0000007-1575043694:1188273..1188305Clytia hemisphaericaexon
TCONS_00001241-exon-sc0000007-1575043694:1187288..1187654TCONS_00001241-exon-sc0000007-1575043694:1187288..1187654Clytia hemisphaericaexon
TCONS_00001241-exon-sc0000007-1575043694:1186214..1187083TCONS_00001241-exon-sc0000007-1575043694:1186214..1187083Clytia hemisphaericaexon
TCONS_00001241-exon-sc0000007-1510915933:1188273..1188305TCONS_00001241-exon-sc0000007-1510915933:1188273..1188305Clytia hemisphaericaexon
TCONS_00001241-exon-sc0000007-1510915933:1187288..1187654TCONS_00001241-exon-sc0000007-1510915933:1187288..1187654Clytia hemisphaericaexon
TCONS_00001241-exon-sc0000007-1510915933:1186214..1187083TCONS_00001241-exon-sc0000007-1510915933:1186214..1187083Clytia hemisphaericaexon
TCONS_00001241-exon-sc0000007-1491911889:1188273..1188305TCONS_00001241-exon-sc0000007-1491911889:1188273..1188305Clytia hemisphaericaexon
TCONS_00001241-exon-sc0000007-1491911889:1187288..1187654TCONS_00001241-exon-sc0000007-1491911889:1187288..1187654Clytia hemisphaericaexon
TCONS_00001241-exon-sc0000007-1491911889:1186214..1187083TCONS_00001241-exon-sc0000007-1491911889:1186214..1187083Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001241-proteinTCONS_00001241-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1186214..1188305 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.300942	0.097822	0.0757205	0	0.67665	0.107503	0.601858	0.362219	0	2.01277	0.295293	0.379085	8.79159	4.89614	3.05716	5.76681	0.778156	1.54371	8.74436	14.4027	0.776097	0.662847	8.08961	4.2873	10.8072	8.55487	3.71386	5.48072	1.89384	1.66398
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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