TCONS_00012783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012783
Unique NameTCONS_00012783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012783 ID=TCONS_00012783|Name=TCONS_00012783|organism=Clytia hemisphaerica|type=transcript|length=3816bp
tgggTGTCCAACTTAATGAAAGTAAAGTTTAATCAATGTACGCAAACCCC
CTTAAAACAACCTCTATGACGTCAGATAGACAAATTTTTATGTTGATATT
GCCGGCCATTTAAAACATCATCACAAAAAGGTGAATATTCAAGAAAGAAA
CTGAGAGTACTTTGACATTATACTTGATAAATACATTGGAGAAGAAAGCA
AATATGTATGTTTGAACCTTGCTGGATATTTGGAACCTTAGATTTATTGT
TACATTGTTAGAGATTTGAATTAACTTTAGTTTAAAAGACATTTATTACG
AGGAAATGGAGTACGAAATACCTTCTGGTTATAATTCATCTGACATGGAT
ATTTACCCAATTGAAAGCAACACTCTACCACCAATGACAAATTTAGCAGA
TATAAGGACGaacaattcaaatttaaatAGTGTTAGCAATGAACagtatg
aagaagaaaaaaagaattgcTTTAGGGTTTTTGATGGCTGGTCAACGGAA
GACCAAATAGATTTTATAGAGGACATATTATTACGCATGACACATTTTCA
ACATGGACATATAAATACCTTTCTAAAACCAATGCTACAAAGAGACTTTA
TTTCAGTATTGCCAGGAAAAGGCTTAGAACCAGTGGCAGAGAAGATATTA
TCATACTTAGACGATAAATCGTTACGGNGTATTATTATGTTTCAGGAAAA
GGCTTAGAACCAGTGGCAGAGAAGATATTATCATACCTAGACGATAAATC
GTTACGGTCTGCAGAACTTGTTTGTAGAGAATGGCGTCGCGTTATAGCGG
ACGGTATGttatggaaaaaattaataCAACGTAAAGTGATGCACGATTCA
TTGTGGTGTGGTCTGGGCGAACGACGGGGCTGGATTGATTCTCTACGCAA
ACCTTCACAAAAAACTGATCATGTATATTTTCGCACTTTATATCCTAAAA
TTGTTGCAGATATAAACAGACTGGAATCGAATTGGCGATGTGGAAAACAC
GGCTTGTTGAAGATTCATTGTCGCAGTGAGAATATCAAAGGTGTTTATTG
TTTGCAGTACGATGATGACAAGATCGTTAGTGGACTTCGAGATAATACCA
TCAAGTTGTGGAATCGAAAATCACTAGACTGTACACAAGTATTACACGGA
CACACAGGCTCAGTATTATGTCTCCAATACGATTACAGGATTATTGTTAC
TGGTTCAAGTGATGCTACTGTCCGGATTTGGGACGTCAACACAGGTGAAA
TGTTGAACACTTTAATCCACCATTGTGAGGCTGTTCTACATTTACGATTT
CAAGATGGTATCATGATCACGTGTTCAAAAGATCGATCAATCGCTGTCTG
GGATCTGAATTCGCCGACGGATATTTCATTGCGAAGGGTGCTAGTCGGTC
ATCGTGCAGCTGTCAATGTTGTGGATTTCGATGACAAATATATTGTCTCT
GCGTCCGGTGATCGAACTATCAAGGTGTGGAACACGAGCACGTGCGAGTT
CGTTCGAACGTTGAGTGGCCACCGACGTGGTATCGCATGTCTTCAATATC
GGGGTACTTTAGTGGTGAGCGGTTCATCCGATTTTACTATCCGATTATGG
GATATCGAGATGGGAAATTGTTTACGAACACTGGAAGGACACGAAGAATT
AGTCAGaTGTATTCGATTCAATAACAAACACATAGTGAGTGGAGCGTATG
ACGGTAAAATCAAAGTGTGGGACTTGCAAGCAGCGTTAGATACCAGGAAA
CCTCCAAATGCTTTGTGTATTCGAACACTTATGGAGCATACTGGCAGAGT
ATTTCGTTTACAATTCGATGAGTTCCAGATAATAAGTAGTTCTCACGATG
ATACGATACTCATATGGGACTTTCTTGATGGACAACAAGACAATTTAACC
GCCCGTTATAACGCCACAAACTCGTGACCTAGTCACCCTACAAAACACAC
ACACAAATCGTATAAAatgctgaatttgaaaaatattttgaaatgatttt
atcctttttatatatttgtgttgttgttgtcgttATTGGCGATGTCGTCG
TTGTCCCTAACAACCGTGTGACNATCCTTTTTATACAtttgtgttgttgt
tgtcgttATTGGCGATGTCGTCGCTGTCCCTAACAACCGTGTGACGGTAC
ACTATCAACAGGCTAGTAAGGCCTTGTTCGCCTCAAGGCTAGTCTGCTTT
ACCCAGATTGTTTGGCTTTGGAATGTAGTGATTTAGTGGAAGCCATAAAT
ACTACAACCCGTTTTTGATTGGGTTATGAAAACAGAAGTTCCTTATTATT
ATGTGCCATTATGTGAATCACTAGCTCATCACGCTTAAGACTGACCAAAA
CAATTTCAAGGTGTTTATGTTGTTGGTAGATATGTTTTTGAATGTGGTTA
GAGTCTTGAGACATTTCTTACGAAAaatcggattaaattttgtTCGCATG
ATCGACGAGTTCGAAATGGTTAGATCGTGAAATTTTACAAGAATGGAAga
gtttcttttgaaaaatgctcTCTTCACTATCGATATTGCGCCCCTTAACT
TTAACGTAATGCTTAGGTTTTTTATTGTATAAATTTTACAGAAAACTTTA
AGGGGTCTTCTTTCTAAGActattataaaaatgaactgtaaagattttct
tacacagagttatatttttttgtttcttttttagttttttttttcatttt
ctatgttgtttctttttacttttgcaGCCGATTTGCCTGGGCTGTTAGGC
CGATTTCACATACAAATTTTCATCAGCTTATTAGAATTAATAGTTTATCG
GTAAGAAAATAAAATGCCAAATACAGttgtcaaaacaaaattctcaTATG
AAGTACTCTATGGGGATCGTTTAAAAAGGGATAAGCTGGAGTTTTTACAA
GATGCTTAACTGATTGGTTATTTTTTAACAATAGggatgacgcgttcttt
agaaaaagtaataaaatcgtttgtctcaacatttaacgaccaacagagtc
atcaaagaacttgtaaaaactctagCTTGACCCTTTAAAAATGGTACTAC
TTATTTGTGCACTTCTCATCCGTTACCGTAGTACTTCTTATCGAGACTCA
ACTGTAGTTGGGTTCATAGTTTCATCCACCATATATATAAGGAGATTATT
TTCTGATTCTTTGTTCTGTTTTTCGTTTGCCAAATCTCtttccgtttttt
ttttctcaaatacttAGCTAACATTTTGAATTGTGTTCGTTGTAACTCAT
TTGTCGAAGTTCCTCCTTTCATCACTTTGTTGGTTCACAAAATATTACTT
TCTCAATTAGAGTCTATTTTTAGTactattattatattattgctATTGTC
ATTTTTGCTAGAAATCCCAATTGAAATTGTACATTAATTTTTTTGTCGCA
GTTTTTGTGCGACTCGACAGATTGACCCCTCCCGGACTTACTTTTTGGGC
TACACGCGTCTTTAATGCACAATTTTCGAGATGAGTGAAATCATTTTTGG
GTCGTTTCAAGAATAATATTAAAATACCACGGGACACATTTAGAAGCTAT
TCCCTTCTGTTTTAGAGAGTTATTTCCAGCACTCGAACAAACGAATCATT
TTAAAAACTAGGCTAATAATGCACTAATGTCGAGAGGAGTTGAGTAACTC
TATTTGCTTCAGGTGTTTACATGGTTCAATTATTTCGAACCTTCCAATAA
GAACGCTCGCTATATATCCGCGAGACGCGTGTAGTCCGATTCCAAATCTA
CTTCAAACATTTTGTGTATATATTACTATCGTTGAAACAATATTATAATA
GCAAATAAAATCTTGG
Run BLAST on NCBI

transcript from alignment at sc0000156:82859..99599+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012783 ID=TCONS_00012783|Name=TCONS_00012783|organism=Clytia hemisphaerica|type=transcript|length=16741bp|location=Sequence derived from alignment at sc0000156:82859..99599+ (Clytia hemisphaerica)
tgggTGTCCAACTTAATGAAAGTAAAGTTTAATCAATGTACGCAAACCCC
CTTAAAACAACCTCTATGACGTCAGATAGACAAATTTTTATGTTGATATT
GCCGGCCATTTAAAACATCATCACAAAAAGGTGAATATTCAAGAAAGAAA
CTGAGAGTACTTTGACATTATACTTGATAAATACATTGGAGAAGAAAGCA
AATATGTATGTTTGAACCTTGCTGGATATTTGGAACCTTAGATTTATTGT
TACATTGTTAGAGATTTGAATTAACTTTAGTTTAAAAGACATTTATTACG
AGGAAATGGAGTACGAAATACCTTCTGGTTATAATTCATCTGACATGGAT
ATTTACCCAATTGAAAGCAACACTCTACCACCAATGACAAATTTAGCAGA
TATAAGGACGaacaattcaaatttaaatAGTGTTAGCAATGAACagtatg
aagaagaaaaaaagaattgcTTTAGGGTTTTTGATGGCTGGTCAACGGAA
GACCAAATAGATTTTATAGAGGACATATTATTACGCATGACACATTTTCA
ACATGGACATATAAATACCTTTCTAAAACCAATGCTACAAAGAGACTTTA
TTTCAGTATTGCCAGGTAAATAAGAGTTAATTCTTGATAAATCATAAGAT
AAATCATAAGATTTATTTATACATGATTTTATACACCATGCACTACTGTA
TCATACATCTTTGTTTCTGTTTTTTTATCTGACTGATATTTGTTGGAATT
TAATTTAGACAATCTCAATGGAACAGGATGATTNCGTCTGGAACGGCGTT
CAGAACTGTTTACTTCTGTTTAGAGGTCTAGAAACTAAGTTGTGAAATTT
GAGGGGGTTCTAACACgatgtttttttcttctaacACACAACTTTATAAG
ATTTCAAAGCCCTTATACTTATATTTTAGTCATTTCAACCTTAAAAAGAT
AATATTctacttgtttttttaattatttcNGGAACAGGATGATCATTATA
TATATCATACATCATCatacatccctcatctaattcagACACCTATTTTA
GAGATTGGAAAGTAAAAAGATCATATCTCTAAAGACAGTGCGGCTGGAAC
GTCAATATATTTGaggattacaattttaccagctttttagcaatttttgc
ctcgcaaACCCAAATCTCCCAACCTCTTTGCCTTACTGTAAAGGAAGATC
AagattagagtttttcagcattCCCAAAAAACCGTAATTGTAgaaatttc
ttccttttcacaggatcgattttcaacaacaaaattCATCTTTTGGTCAA
TcggtttttttctgacgttctTCCTTCAAGGAATATCAATCCCTTCGTtt
ctagacaggagacccgtcgtgtgtttttttataatttgatgtacacaaga
cgggctCGAgcagctgtgagtccaatattggactcacattttttacagtg
ggaaattcgaatttagcgctgtcctcagttactaaaataaaaaacaaaat
tgtgACCAGTAAAAAcatttattcatagaattatatttcacaggtctatc
gacctctacgaaataattttagatttataaattgtctagttcttcatctg
tcgtccagtcgtgaagatatggacagaagagaagacgttattttggtctt
tgtcctaggtttttgaactaggcgaaggtttgttctagggcttcctctta
catgccagacgaaatcgtcattttttgaattcatttttttcgNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgtcgg
ttttttcgttcatgtttttgattttgctaaatttcaaccatttttgaaga
actgcacaaaatgcgtgttgactaactgacgtcaaataaaaacgtTTGAT
CATAACAAagtttgattggctatgttttcaaccgttattaggatctggta
aattcaaactctcagcctgtaccatgctatacatttcgccatcagtttat
caaagaagaaatcatagcatggattcccaggctacttCGTTTCCCCCTTG
AGAAACTGATTAGCTTGCGTTCTCGCCGAGGGCGCTACTTAGATTTTGCC
TATTTTGTGCCCACGATAGAAGGTTCCAAATGAAATATGGGGGTGTTACT
AATAATAAACTATCTCATTTTATAGAGATACAAatatcgtcaactgctct
aacttagggcgattggtcgaaacatgggactggttgatatctggcctgta
ttttcacttactgttaaatctctttgacaaaaaatttgttttgataagtc
caccaagtttatcaatcatgcttcttcattcttcttagagtgcacagaca
ctcgtcttagagtgcacagacactcgcgtgtgttcTACTACgggtttttt
catattttgatttaaaagcctactctgtGCGAAAGataaatcgtgtattt
tttaaaaaggccgttcattaactcaaatcaaatgactttggaggttcggt
gaaatggtggccgaattgtcgtcccatgttttgtcagatagtcccaaagT
TACAGTAGTTGACGGTAGTATATTGAATATAatcaacttatttatttaag
tattttttagCCCAAACTTAAATATAGGGCTAAGTAAAAAGCAAATGATG
GCAGTTCTGTTTTTTGCTCAAACCcccagaaaaaatgtttttggcaactt
actctcgggtacctaatagccgccccccccNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNataatttaaaagtttctgatgaggaaatgtgtggaattt
gttgatgttgatggcttgttgattctgtaaagagaaaagaaaacaggtat
agctttttctaaccaaggcaTATTGAAGTTCTAGCCGCACTGAAAGAAGG
TGTTAGAGTGTTGACATTAGATTTTAAATTACAATAATCCTCTGTGCGCC
GAGCTTAGAAGTACACATAAAAACATTAGGTTACAAAGTCAAATAGCCTA
GCCATTGTGTATGTACTTCTTATCTGGGTGTGTGCAAGTGTGTGGACACT
CTACTGGTAGCAAAAtcaacttaaaaaaaatttaatttatttgtcTTCTA
CAAGATAGCTGATTACTATTATCTTGTTTGTACTGGCTGAGGGTAGGCAA
TGTATGCTGTAGTATGTAGTAATTTGTTCTGCACCGTTGCATTTGCTTGG
AAAGGTTTATTTAACATGACGCTGCATCCtacaaaaggtctattgtattA
TTTGCAATATTTGCTTTTTTAGGCTGATGCAAATAAATTTatagaaatga
aaaaagaaatagaaataattgATCTGAACATCAAACATTATCAAAAGCAA
TCCAATCTCTGAAAATGAATCTGAAAATTACTAGGTAAAATTTAATTGAT
ATTTGATTGTGTTTCGCAAACAAATTTCAATCATGCATTGCGCTCAAATT
TGATTGATATGATTGCTGATTCTGTTTGATTTTGAGATTGTCTGGTTTTA
CAATGAAATTCCTAAATTgatcgacatccctcatctaattctgaCACTCT
TTTTTGGAGATATGAATAATAGGATTATTATTCAACTAACTGAATGAACC
AGTATCCAAATAAAGTCAATCTAACAATATCTGGCAATTTGTTTTTGCAC
TGAGCGATATCATTTTTTACACTAGTTATTTGGCAGGATGCTTTCAATCA
AAGGGAATCAATGGAATTACGCACAATcaaccaatagaccttttttttca
agattttctagCTTAAATAATTACCCAAAAAATATAATAGTCACATAATC
ACACCAATAGCTTAGCAACTAACCTATAGCTTATCGTTTTTGAAGGGCTC
AAGTTATATCTTTAGTGATTTTGCTATTCAAATGTCTATCCCTCTAAGCT
AGAAAGTACATGCACAACCATCAGGGTATATGACATTATTTCACTTTACA
ACCTTACTGGTTATGTTTGTACTGTTAGGCTCAGCATACAGATGGTTGTA
TGAAAAGAACGGTctcaatttttaagattttgtggAATGTCTACACTATA
GCCTCTGTGTGTGCGAGAGAGAGAGTATAAAAATGTTCAGAGAATAATAG
GGAggcattttttaactttatgaTGGAGGGTTGTGCTGTTTTGCATCGTG
AAGCAAAATCTCATAGTTTTTTGCATGAATCTGAAGGTTTAAAAGGGTAA
ACATTAAAAGCCCCCAGGTTCTGCACTTCTTTAGCCTGTATTTTGCACCT
TCGCATATATCCCGAAAAAAGTAAGGCTCATTCATGAATTCTCACAACCA
GAAATGTTTAATGGCTAAAACTAATTGTAGTAAATAAACTTTTGGTAAAA
GTTTAATGAGAACTTCTTCTTCTGCTCAGCCTTATTTCGAATNAATAGAC
CcttcttttcaagattttctaGTTTAAATAATTACccagaaaaatataat
tttttttagatttcaggCGCTTAGGGTCCAAATTTTATAAGGCCACTTTT
TACTGTTTCATAGacatttatttatatattttaatttgaatttgCATAAT
GCACATGATTTTACTTGATAGATAtttattgtttttagtttttaatcGTT
ACCTAAAATCTCCAGaaacttatttaaaaaattttgctgttCAGCAAGCT
TGAAAAAgtttaataattttaaaattgttcatgttacaaaacttggaaaa
ctacACTAATAAACGGAATATCAATAACCTTTTAGCATTATGtgaaaaag
ctttatttaataAACTTGACTCGTTTTAACAACGTTAATTCCCTTGAGTT
AATTCTAGTTTTTCAGTTCACCTCGTGTGTTAAATTTATGTTGTTCGATT
TTTCTTTGATAATGTGTCAGGATATGGATTATTTTAGTTGGCTACTCATG
TCATTCAAAGATTCTATGTCTACTTGAGAGAGCCTTAGCCTTTTTTTACT
TTCAAGtcgattttgaggattttaacTTACTATTTTACAATGAATGTAAT
CTTCTCAAAGTTttgacttttctttcttttcatttattGATCATATCATA
GTAAAAACTCTTTGcctggtgtaaatgtttttttgtaaattttctgttTG
AACTCATCAGTCATTTGATTGTCTCTCTATACCATGTGTTAAGATGCTGT
GTAGCTCTTTCTTAATCTTTTATAACTGTTATTTCTGATCCTCTTTAAAC
AACATATTTAATTTGGCTGACGTTTTTAACATGTCAATTTTAGCTCAGTT
GGAAGTTATTTCTTTGTCTAACTCGAAAGGTTTTTCAATCTCTCTAAATA
TAAAATACATATCtcgtatttaccttgccaacgAGTTTATTTAGAAATTC
GTTTCAGATAAAACAGTGTCAATATAAAGCTAAGCCAGAGCTAGAGGTCT
ATCCTGCCTTAGGTATATTTTGATCCATTTAAAGTCTGAAATCACAACAC
CTCCTTTAACGAGAATACTTGAAAATATTATAACCTAAAAGTGTTATCGT
CGCTGACGCTGGATCAACAATATTGTGTGTAAATGGTATCGAAAAGCgta
aagaaataaatcactttATTTATTGTATTATTATGTTTCAGGAAAAGGCT
TAGAACCAGTGGCAGAGAAGATATTATCATACTTAGACGATAAATCGTTA
CGGNGTATTATTATGTTTCAGGAAAAGGCTTAGAACCAGTGGCAGAGAAG
ATATTATCATACCTAGACGATAAATCGTTACGGTCTGCAGAACTTGTTTG
TAGAGAATGGCGTCGCGTTATAGCGGACGGTATGttatggaaaaaattaa
taCAACGTAAAGTGATGCACGATTCATTGTGGTGTGGTCTGGGCGAACGA
CGGGGCTGGATTGATTCTCTACGCAAACCTTCACAAAAAACTGATCATGT
ATATTTTCGCACTTTATATCCTAAAATTGTTGCAGATATAAACGTAAGTT
AATCTCATTTTGTATACCCTGAAACCCATTCTTCTAAAAACAACATTTCT
ACTTTTCAAGCACTTTGAATTTAACCTTTAACAAATTTAAGTGGTTTAAT
CGTCCATTTTAAATAAACACACTTTGCTGCGAGACATGGTTTGATGACTC
ATTCCAGGCACAGCTTGAATTTCTCATAATTCATACAACTTTTTTTTAGT
ATCAAATTCTCAACAAACAAGCTTGATTTATGCCTTggcgcaaaatttca
aaattgttaaCAGTATTCTTACATAACACAATATATTACAACGTTATATC
TGTCTCACAGctccggtgaaactttttcctacagcggggataaaagtttc
gattgaaatctcgatggggataaaaattcttattgttacaaggttaaaaa
atccagtgggatggtttgggagtgcaatttctaaacaatgagtttttaat
ggggatgaaatcaaagtcaatttctcagttgggctgaaattctagggtat
ctTTCCCACCAGGGACggaatttttgccaaattttccagtgtggCTGGAg
ccccagcgggtctgtgacacaggggtgttatatctGAAGCCGATCAATTG
GCAAACTTTCTAATTTGAGCATTATTTAAATCGATGGATTCGATCGAAGT
TCGATTATCGAATCAAACTTGTTCGAAATCTTTAGTAGACTTTTATTGAT
ACCTTTTTCACAACGATTCCGGCCTAACTCCATTATTTTATCGCGTTTCT
TTTTACAGAGACTGGAATCGAATTGGCGATGTGGAAAACACGGCTTGTTG
AAGATTCATTGTCGCAGTGAGAATATCAAAGGTGTTTATTGTTTGCAGTA
CGATGATGACAAGATCGTTAGTGGACTTCGAGATAATACCATCAAGgtaa
aatattttggtttttttcGAAAACGGTTCGGACATTTTCGAACCTCGTTA
AGTCTAGAAATGTTTTTTCCCGATTTGAACTTAGCTATCGTAGGTCAACT
ATAATAAGTATTAAATATATGGGAAAATCGTGCCGGCGGAGGTCAGAAAT
GCTACCTTTCATCTTTCATATTGATTCTAGAACATTTTGTTATTCCAGAT
TACTCTAAACTTTTGAATGCTGACTTAGTTTAAACCCGCCTCACTGCTGC
TATAGGTCAAGGCTAAGTTTtgataaacaattttaaaaatcttaaatata
TTGTCACGCGAGCTTGacatttttcttgtgtttttattctaaatggaaaa
tttaaaaacgaaaattgTATTTTCAGTGAAGCTCTTCTTTCTACCAGTca
ctattttttgagaaatactGTATGTTTTTTTTCAGATATATCATTATAGC
GCTCTGTGTATAGAAATCCAAAGCAAACGAAGAAAAAAACGATGTCATTA
CGTTTTAATCCTCTACTTAGCCTAATTTTCTAAATAGCTTTTTCTATCCC
AATTAGAAATGAGCTGTTCTCGAAACACTGTAGTTTATGAGAATCACAGC
ATCTTTGTGGTTTCTTTTTTGTCTCTAAATAAGATTgttattatcatcat
catcagttCGAAATCGAATTTGCTTTGAAACAGAATCCAATCAGACAAAA
ATAATACGTAGACAGATCTTGTTCATTTATACAAATATTATTTATCTCTT
TCCACGGTCACTTTAATTCTATGTCCTGGAAATTGtggttaaattttttt
ctaccaCATAAACACACCAATTTTATTTCCTGACTCTCCAGCTCGTCTTG
CCTTCCCGTGCTCACGGAATCTCCCAAATATCTGTATAGGTGGACATTTC
CTTCACGGGATTTAAGGCAAGAGTCTTAANTCCCAAATATCTGTATAGGT
GGAAATTTCCTTCACGGGATTTAAGGCAAGAGTCTTAAAACCTTCACTCA
ATAAATTTGTAAGGGTTAGtgacaatatttttttgtacagGTTGCCCAAA
TTTATCCCCATGAAAATATTGCCCGGTGAAGTTTCTCTTTTCAAAGAATC
AAGCCCTCTTTACAATACTCTTCCAAACTCAACCTTGACTTTTCTAACTT
TCCTTCAGTTGTGGAATCGAAAATCACTAGACTGTACACAAGTATTACAC
GGACACACAGGCTCAGTATTATGTCTCCAATACGATTACAGGATTATTGT
TACTGGTTCAAGTGATGCTACTGTCCGGTATGTGATTATTTGAAAGTTTG
TAATTCGCCCTTTTAAACTGACTATGATTAAGTTTATAGATTATACACTG
CCTTGGCTTCTACTTTACCCTTTCAAATTTTTAGGCTGTTGCATTGGTTA
CAAAGTACAAGCATGAATTAATAATCCCTCTTTTACACCCTACTAGAAGT
AAACGCACCGACTTGTTTCCCTTGAAGCTATACAGTAGATAGAACCACGT
TTTACAGTACATTTAATGTATGATTTCTTTCTATGTAGGATTTGGGACGT
CAACACAGGTGAAATGTTGAACACTTTAATCCACCATTGTGAGGCTGTTC
TACATTTACGATTTCAAGATGGTATCATGATCACGTGTTCAAAAGATCGA
TCAATCGCTGTCTGGGATCTGAATTCGCCGACGGATATTTCATTGCGAAG
GGTGCTAGTCGGTCATCGTGCAGCTGTCAATGTTGTGGATTTCGATGACA
AATATATTGTCTCTGCGTCCGGTGATCGAACTATCAAGGTAAGAATCTAT
TTTTTTCGGACAAGTTCAGGGAGTGATTGATACTCACCATAAACACGCAC
TTGAGCAGAAAGGCTGTAAAATGTTAGCTTTGATACCCTCAACCTCCAAG
TGCGGATAGACTACTAATTTTCTCTAATCGTTATGCGATGGAAGAACCAA
CTTTTTAATTTATTCTCTTCTAGTATTAGTGCGCCGAAATGATTATCAGA
GGAATGACGGTAATGGGTCTAGATATCCGACGTCGATCGGGGAGTAATCA
AATTCTGATGCGAGTTTTTTTACGATGATGAATTATAGTGTGATAAGGAA
AAGCCCAAACTTTTGCTGAAAGAATTTACTTTCGcactcaaaattttttt
tttcgatggcttttctttttattttgaataatatatttcaaaattaaata
gTTTGTAAAATTTCTCGCCACCAAAGAAgaatttttactttcatttcGAA
AAACAGggacatatttcactttgacaGGAACTGTTCATTTGCTTCGAAAA
AGGTGCAAGGAACAAacattttgtattttaaaatattcatatCGTGGGAT
GTtactaaaaatattgttttcagtAGTAAAAAGGGAAGCAAAACTGAATC
AAGGGGTATATTTAGTTTCCCGCGTCAACAATCAAAACACTATGTATAGA
TAACACATCAATTATTTAACGTCAAGAGAATCTAAattcaacattttgaa
atttttgtgcgGCGGCAACAATTTCTATTTGAACTCGATTGTTCATTTAA
AATGGCTgcaatctttttcattcaaactACAGCTATGGGCTAGCAATTCT
GATTTCGTTATATTGCCAATCATTCACTAGACCAACTATAATCGCTTGAA
ATCCTAGTAAAACTCCTCACAAAAATTTGTGGTCAATCACTccttgttgg
acctaccccggtggggtggaggtcctataaattcacctatgtccgttcgt
ccgtccgtccgttcgttcgttcgttaccagcttttctcgagattaaatca
taggaatcatttgatctttggtacaaaggtgcaaaacggtggtggccaaa
attTGACGGAGCCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtaaaatctcagacatcatgacat
ttagtgacgtggtggtactgcaaaaaagctcaaaaataattttagtacca
tgtgtactaaaataccaaaaagggtggttttttaaagaaatttttgaaaa
atcttagtattttgttctaaaatcagccaaaatggagcatttttttaaca
attttggaaaaaatttgatttttttttttcaggaattttcgaaaaaatct
tcagaaattttttcagaatttttccaattttttaaatatttttNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgttct
gaatgattgtttaacgttcatgctcacgtagatatcaattatatatgtgt
taaatgcataaccaggtaggtccataaaagtatcacttgtttctgtacta
attttgaaaaatatctcaaactcaaatattttttgaaatgtcttCCTACA
CTTGCAGTTCTACAATTCTATATTTTCATCCTGTTTGATCCCTGATAGAA
TGACGGTGACGCGGCGCATTTTCAAGGAAAACGACTTCTCGACTATAGAT
AAACCCTCTGTCACTTTTCGTCATTTTCTGGCCTGGAATTTATATTAACA
GTAATTTGTCTTCTCATTACCCTAAAGGTAGAAATCTTAGCGgatggttg
aaaaagttttttcagagggattTTAATTTAGGGGATGGcctgaaaaattt
aatttgacgggaatttaataTGGCAGATGAAGGATAATTTTAGCCAAAAA
TAAcctattaaagaaaaaaaacctgCTTTAAGAACTGAAATAGCTCACAT
TTGgaattttggccaaatccgccaaattttctttccgccaaatgTTCTTC
CCTTAACGtagttggaaagataattaaGACAAGCCAATTGTTCGGCTTAC
ACGTTTAATTTTCTTACAAATACTTGAAATAAGTTTGCTTTTTTGACAGG
TGTGGAACACGAGCACGTGCGAGTTCGTTCGAACGTTGAGTGGCCACCGA
CGTGGTATCGCATGTCTTCAATATCGGGGTACTTTAGTGGTGAGCGGTTC
ATCCGATTTTACTATCCGATTATGGGATATCGAGATGGGAAATTGTTTAC
GAACACTGGAAGGACACGAAGAATTAGTCAGGTACCTTTTTTCGTGATTC
ATTTTTGACTTTACAAGTAAAGTGATTTTCTCATCTAACGATTGACCACT
TGCATGAATTTTAGGCAAATTGGGGTATAGGAGACTCTTTAATAAAATCT
AATTTCAACCCCTTTAAGAAGCAGCAGTCCAGATTTTTGCCCCTCAAAAG
TTTATGTGATAATGACAACGCAGTGTAGTAACGCTAgtatagtaatattt
tttttcagaatatgTTTTCAGTTATACAGGTTTTTTGTTGCGCCATCATA
ATAAAAAGACTTACTATGAACTGGGCAAAAAGGTCGAATCTAACTGAtgg
tttcttttcctttttcagaTGTATTCGATTCAATAACAAACACATAGTGA
GTGGAGCGTATGACGGTAAAATCAAAGTGTGGGACTTGCAAGCAGCGTTA
GATACCAGGAAACCTCCAAATGCTTTGTGTATTCGAACACTTATGGTAAG
AAAGTAATTTGTAATTGTTGGCATATTTGCGAACGCTGACTACGTCCTTT
GAAAAGTATACATTAAACAAAGGGAATTAGCTTTTTTACtgaatttattt
tcaagattAATAAATAGAGAggttagaaaaatcaaaaaataaattttctt
tctcgCGTACCGCCCTGATTTAGCTCATTTAGCTCATCCACGGTAACTGT
CCCTTTTTCAGAGAAAATACTGGCTCTTCATCACATTTCTCCGTTTTTCT
CTTTTCAGGAGCATACTGGCAGAGTATTTCGTTTACAATTCGATGAGTTC
CAGATAATAAGTAGTTCTCACGATGATACGATACTCATATGGGACTTTCT
TGATGGACAACAAGACAATTTAACCGCCCGTTATAACGCCACAAACTCGT
GACCTAGTCACCCTACAAAACACACACACAAATCGTATAAAatgctgaat
ttgaaaaatattttgaaatgattttatcctttttatatatttgtgttgtt
gttgtcgttATTGGCGATGTCGTCGTTGTCCCTAACAACCGTGTGACNAT
CCTTTTTATACAtttgtgttgttgttgtcgttATTGGCGATGTCGTCGCT
GTCCCTAACAACCGTGTGACGGTACACTATCAACAGGCTAGTAAGGCCTT
GTTCGCCTCAAGGCTAGTCTGCTTTACCCAGATTGTTTGGCTTTGGAATG
TAGTGATTTAGTGGAAGCCATAAATACTACAACCCGTTTTTGATTGGGTT
ATGAAAACAGAAGTTCCTTATTATTATGTGCCATTATGTGAATCACTAGC
TCATCACGCTTAAGACTGACCAAAACAATTTCAAGGTGTTTATGTTGTTG
GTAGATATGTTTTTGAATGTGGTTAGAGTCTTGAGACATTTCTTACGAAA
aatcggattaaattttgtTCGCATGATCGACGAGTTCGAAATGGTTAGAT
CGTGAAATTTTACAAGAATGGAAgagtttcttttgaaaaatgctcTCTTC
ACTATCGATATTGCGCCCCTTAACTTTAACGTAATGCTTAGGTTTTTTAT
TGTATAAATTTTACAGAAAACTTTAAGGGGTCTTCTTTCTAAGActatta
taaaaatgaactgtaaagattttcttacacagagttatatttttttgttt
cttttttagttttttttttcattttctatgttgtttctttttacttttgc
aGCCGATTTGCCTGGGCTGTTAGGCCGATTTCACATACAAATTTTCATCA
GCTTATTAGAATTAATAGTTTATCGGTAAGAAAATAAAATGCCAAATACA
GttgtcaaaacaaaattctcaTATGAAGTACTCTATGGGGATCGTTTAAA
AAGGGATAAGCTGGAGTTTTTACAAGATGCTTAACTGATTGGTTATTTTT
TAACAATAGggatgacgcgttctttagaaaaagtaataaaatcgtttgtc
tcaacatttaacgaccaacagagtcatcaaagaacttgtaaaaactctag
CTTGACCCTTTAAAAATGGTACTACTTATTTGTGCACTTCTCATCCGTTA
CCGTAGTACTTCTTATCGAGACTCAACTGTAGTTGGGTTCATAGTTTCAT
CCACCATATATATAAGGAGATTATTTTCTGATTCTTTGTTCTGTTTTTCG
TTTGCCAAATCTCtttccgttttttttttctcaaatacttAGCTAACATT
TTGAATTGTGTTCGTTGTAACTCATTTGTCGAAGTTCCTCCTTTCATCAC
TTTGTTGGTTCACAAAATATTACTTTCTCAATTAGAGTCTATTTTTAGTa
ctattattatattattgctATTGTCATTTTTGCTAGAAATCCCAATTGAA
ATTGTACATTAATTTTTTTGTCGCAGTTTTTGTGCGACTCGACAGATTGA
CCCCTCCCGGACTTACTTTTTGGGCTACACGCGTCTTTAATGCACAATTT
TCGAGATGAGTGAAATCATTTTTGGGTCGTTTCAAGAATAATATTAAAAT
ACCACGGGACACATTTAGAAGCTATTCCCTTCTGTTTTAGAGAGTTATTT
CCAGCACTCGAACAAACGAATCATTTTAAAAACTAGGCTAATAATGCACT
AATGTCGAGAGGAGTTGAGTAACTCTATTTGCTTCAGGTGTTTACATGGT
TCAATTATTTCGAACCTTCCAATAAGAACGCTCGCTATATATCCGCGAGA
CGCGTGTAGTCCGATTCCAAATCTACTTCAAACATTTTGTGTATATATTA
CTATCGTTGAAACAATATTATAATAGCAAATAAAATCTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007175XLOC_007175Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012783-exon-sc0000156-1491911889:82859..83473TCONS_00012783-exon-sc0000156-1491911889:82859..83473Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1510915933:82859..83473TCONS_00012783-exon-sc0000156-1510915933:82859..83473Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1575043694:82859..83473TCONS_00012783-exon-sc0000156-1575043694:82859..83473Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1491911889:91000..91351TCONS_00012783-exon-sc0000156-1491911889:91000..91351Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1510915933:91000..91351TCONS_00012783-exon-sc0000156-1510915933:91000..91351Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1575043694:91000..91351TCONS_00012783-exon-sc0000156-1575043694:91000..91351Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1491911889:92117..92254TCONS_00012783-exon-sc0000156-1491911889:92117..92254Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1510915933:92117..92254TCONS_00012783-exon-sc0000156-1510915933:92117..92254Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1575043694:92117..92254TCONS_00012783-exon-sc0000156-1575043694:92117..92254Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1491911889:93417..93535TCONS_00012783-exon-sc0000156-1491911889:93417..93535Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1510915933:93417..93535TCONS_00012783-exon-sc0000156-1510915933:93417..93535Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1575043694:93417..93535TCONS_00012783-exon-sc0000156-1575043694:93417..93535Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1491911889:93797..94046TCONS_00012783-exon-sc0000156-1491911889:93797..94046Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1510915933:93797..94046TCONS_00012783-exon-sc0000156-1510915933:93797..94046Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1575043694:93797..94046TCONS_00012783-exon-sc0000156-1575043694:93797..94046Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1491911889:96658..96839TCONS_00012783-exon-sc0000156-1491911889:96658..96839Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1510915933:96658..96839TCONS_00012783-exon-sc0000156-1510915933:96658..96839Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1575043694:96658..96839TCONS_00012783-exon-sc0000156-1575043694:96658..96839Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1491911889:97177..97303TCONS_00012783-exon-sc0000156-1491911889:97177..97303Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1510915933:97177..97303TCONS_00012783-exon-sc0000156-1510915933:97177..97303Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1575043694:97177..97303TCONS_00012783-exon-sc0000156-1575043694:97177..97303Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1491911889:97567..99599TCONS_00012783-exon-sc0000156-1491911889:97567..99599Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1510915933:97567..99599TCONS_00012783-exon-sc0000156-1510915933:97567..99599Clytia hemisphaericaexon
TCONS_00012783-exon-sc0000156-1575043694:97567..99599TCONS_00012783-exon-sc0000156-1575043694:97567..99599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000156supercontigsc0000156:82859..99599 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.84102	8.71589	7.17635	6.41121	35.7778	31.5305	37.2054	38.4578	19.1028	23.6721	16.4698	14.7501	22.2432	18.2392	15.2435	19.036	32.1736	30.678	18.2316	24.5593	28.7014	27.6978	20.1902	23.6064	22.8642	23.7995	67.4624	47.5255	35.2948	36.1615
Blast
[Close]
BLAST of TCONS_00012783 vs. Swiss-Prot (Human)
Match: FBW1A (F-box/WD repeat-containing protein 1A OS=Homo sapiens GN=BTRC PE=1 SV=1)

HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 310/413 (75.06%), Postives = 352/413 (85.23%), Query Frame = 2 
Query:  653 ILRR*IVTXYYYVSGKGLEPVAEKILSYLDDKSLRSAELVCREWRRVIADGMLWKKLIQRKVMHDSLWCGLGERRGWIDSL--RKPS--QKTDHVYFRTLYPKIVADINRLESNWRCGKHGLLKIHCRSENIKGVYCLQYDDDKIVSGLRDNTIKLWNRKSLDCTQVLHGHTGSVLCLQYDYRIIVTGSSDATVRIWDVNTGEMLNTLIHHCEAVLHLRFQDGIMITCSKDRSIAVWDLNSPTDISLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLSGHRRGIACLQYRGTLVVSGSSDFTIRLWDIEMGNCLRTLEGHEELVRCIRFNNKHIVSGAYDGKIKVWDLQAALDTRKPPNALCIRTLMEHTGRVFRLQFDEFQIISSSHDDTILIWDFLD 1879
            +L+R  +T    +  +GL+ +AE ILSYLD KSL +AELVC+EW RV +DGMLWKKLI+R V  DSLW GL ERRGW   L   KP       + ++R LYPKI+ DI  +ESNWRCG+H L +IHCRSE  KGVYCLQYDD KIVSGLRDNTIK+W++ +L+C ++L GHTGSVLCLQYD R+I+TGSSD+TVR+WDVNTGEMLNTLIHHCEAVLHLRF +G+M+TCSKDRSIAVWD+ SPTDI+LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL+GH+RGIACLQYR  LVVSGSSD TIRLWDIE G CLR LEGHEELVRCIRF+NK IVSGAYDGKIKVWDL AALD R P   LC+RTL+EH+GRVFRLQFDEFQI+SSSHDDTILIWDFL+
Sbjct:  175 MLQRDFITA---LPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 584

HSP 2 Score: 109.768 bits (273), Expect = 1.843e-24
Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 3 
Query:  438 NEQYEEEKKNCFRVFDGWSTEDQIDFIEDILLRMTHFQHGHINTFLKPMLQRDFISVLPGKGLEPVAEKILSYLDDKSL 674
            +  YE+EK+ C + F+ WS  DQ++F+E ++ +M H+QHGHIN++LKPMLQRDFI+ LP +GL+ +AE ILSYLD KSL
Sbjct:  127 SASYEKEKELCVKYFEQWSESDQVEFVEHLISQMCHYQHGHINSYLKPMLQRDFITALPARGLDHIAENILSYLDAKSL 205
The following BLAST results are available for this feature:
BLAST of TCONS_00012783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBW1A1.843e-2475.06F-box/WD repeat-containing protein 1A OS=Homo sapi... [more]
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