TCONS_00012768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012768
Unique NameTCONS_00012768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012768 ID=TCONS_00012768|Name=TCONS_00012768|organism=Clytia hemisphaerica|type=transcript|length=307bp
TATAATTTAATCATaataaacatttattttaaaattgtaaGCGTGAACAA
ATCAATGTTTTTGCTTAAAGCTTAGCCTTCGAGCATCACTAAACACCACC
GCCAAATATGGGCGGATTTGcatattttttctcatttagtAGTTATTTTA
ATCAATGTGTTTCTCTCATGCAGTAGGTTCAGATAGTGCACATGGAGTGA
AATGGTAGCCTTGatatctaaagtctattcacgataagtgtgcactcttt
tttcatttacctataacttttgaaggaattcttcaatctttataaatttg
gtatcat
Run BLAST on NCBI

transcript from alignment at sc0000147:487165..487471

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012768 ID=TCONS_00012768|Name=TCONS_00012768|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at sc0000147:487165..487471 (Clytia hemisphaerica)
atgataccaaatttataaagattgaagaattccttcaaaagttataggta
aatgaaaaaagagtgcacacttatcgtgaatagactttagatatCAAGGC
TACCATTTCACTCCATGTGCACTATCTGAACCTACTGCATGAGAGAAACA
CATTGATTAAAATAACTactaaatgagaaaaaatatgCAAATCCGCCCAT
ATTTGGCGGTGGTGTTTAGTGATGCTCGAAGGCTAAGCTTTAAGCAAAAA
CATTGATTTGTTCACGCttacaattttaaaataaatgtttattATGATTA
AATTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007165XLOC_007165Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012768-exon-sc0000147-1491911889:487165..487471TCONS_00012768-exon-sc0000147-1491911889:487165..487471Clytia hemisphaericaexon
TCONS_00012768-exon-sc0000147-1510915933:487165..487471TCONS_00012768-exon-sc0000147-1510915933:487165..487471Clytia hemisphaericaexon
TCONS_00012768-exon-sc0000147-1575043694:487165..487471TCONS_00012768-exon-sc0000147-1575043694:487165..487471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000147supercontigsc0000147:487165..487471 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.679438	1.27139	1.36538	0	0.0509288	0	0	1.63268	1.58855	0.0954871	0.8546	1.57314	0.572234	0.313556	2.54906	3.28352	0	0.481673	0	0	0.424968	1.33896	0	0.967111	0	0	4.90789	2.80287	2.17226	1.77581
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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