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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012540 ID=TCONS_00012540|Name=TCONS_00012540|organism=Clytia hemisphaerica|type=transcript|length=785bp
CTATTTTAAGAGCGTCTACTAGTGATTCTTCATTCTGTTCCAACAACTCA
ACACCATCGATCGCATGAAAGCGGAACAATTCACAATATTCTTCCAGAGA
AATGTCTTTCAGCCAATCGCAAACATCTTCAACGGTCCATGATTTGAGTT
TTACTCGCCAATCACCACTGCTACTTTTTAGATTGTCAGGTGCAGGGGGT
TCTCTTTTGGTCGGTTGAAACATATTGCTTCTTTTAGATAACCATGAGAC
ACCAGGAGGTGGCTCAAAAAATTTATTAGTCGATGTAGCTGGAGGTGTTC
CGCTATGTATTGCTGAAGGTGGAGGAGGTGGTCCACTGCGTATTACTGAA
GGAGGAGGTGGTGGTCGACTGCGTGTTACTGAACGAGAAGGAGGTGGTTC
ACTGCGTGTTGCTGAAGGTGGAGGTGGTGGTCCACTGCGTGTTACTGAAC
GAGAAGGAGGTGGTTCACTGCGTGTTGCTGAAGGAGGAGGTGGTGGTCGA
CTGCGTATTACTGAAGGAGGAGGAGGTGTTCGACTTCTGCTTATTTCAGT
TGATGGGCATTGAGGTGAATGAGGtcataatgattttaatgaatATGTAT
CCTTGTAGAGGGTTGTGGTAGTTGGAATTTGCAAACTTCCACTGGGTGGT
GTTTTGGTTGAAGGAATGAAATTGTCTGTCGGTGGTGATTGAGGTTATGA
TGTAtgtgaattttctttgaatgccATGTGATCATAAGTAAGAAACTACA
CATAGAGCGTATGTTTGTATATGTCAACTTAAAAC Run BLAST on NCBI transcript from alignment at sc0000145:481551..484057+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012540 ID=TCONS_00012540|Name=TCONS_00012540|organism=Clytia hemisphaerica|type=transcript|length=2507bp|location=Sequence derived from alignment at sc0000145:481551..484057+ (Clytia hemisphaerica)
CTATTTTAAGAGCGTCTACTAGTGATTCTTCATTCTGTTCCAACAACTCA
ACACCATCGATCGCATGAAAGCGGAACAATTCACAATATTCTTCCAGAGA
AATGTCTTTCAGCCAATCGCAAACATCTTCAACGGTCCATGATTTGAGTT
TTACTCGCCAATCACCACTGCTACTTTTTAGATTGTCAGGTGCAGGGGGT
TCTCTTTTGGTCGGTTGAAACATATTGCTTCTTTTAGATAACCATGAGAC
ACCAGGAGGTGGCTCAAAAAATTTATTAGTCGATGTAGCTGGAGGTGTTC
CGCTATGTATTGCTGAAGGTGGAGGAGGTGGTCCACTGCGTATTACTGAA
GGAGGAGGTGGTGGTCGACTGCGTGTTACTGAACGAGAAGGAGGTGGTTC
ACTGCGTGTTGCTGAAGGTGGAGGTGGTGGTCCACTGTGTGTTACTGAAC
GAGAAGGAGGTGGTTCACTGCGTTTTGCTGAAGGATGAGGTGGTGGTCCA
CTGCGTGTTACTGAACGAGAAGGAGGTGGTTCACTGCGTGTTGCTGAAGG
TGGAGTAGATGCTCCACTGCGTATTACTgaaggaggaggaggaggtggTC
CACTGCGTATCGCTGAAGGTGGAAGAGGTGGTTCACTGTGCATTGCTAAA
GTTGGAGGAGGGGGTGGTCCACTGCGTATTAATGAAGGAGGAGGTGGTGG
TCCATTGCGTATTGCTGAAGGTGGAGGAGGTGGTGGTCCACTGCGTATCG
CTGAAGGAGGAGGAGGTGGTGGTGGTCCATTGCGTATTACTGAAGGAGGA
GGAGGTGGTGGTCCACTGCGTATCGCTGAAGGAGAAAGATGTGGTGGTCC
ACTGCGTATCGCTGAAGGAGGAGGAGGTGGTGGTGGTCCATTGCGTATTA
CTGAAGGAGGAGGAGGTGGTGGTCCACTGCGTATCGCTGAAGGAGAAAGA
TGTGGTGGTCCACTGCGTATTGCTGAACGAGAAGAAGATGGTCCACTGCG
TATTACTGAAGGAGGAGGAGGTGGTGGTCCATAGTGTATTACTGAAGGCG
GAGGATGAGGTGGTTCACTACGTTTTACTGAAGGAGGAGGTGGTGGGCCA
TCGCGCATTACTGGAGGAGGAAGTGGTGGTTCACTCTGCATCGCTGAAGG
AGGAGGATGTGGTGGTCGACTGCGTATTGCTGAAGAAGAAGGAGGAGGAG
GTGGTGGTCCATTGCGTATCGCTGAAGGTGGAAGAGGTGGTTCACTGTGC
ATTGCTAAAGTTGGAGGAGGGGGTGGTCCACTGCGTATTAATGAAGGAGG
AGGTGGTAGTCCAAAGTGTATTACTGAAGGAGGAGGAGGTGGTGGTCCAT
TGCGTATTACTGAAGGAGGAGGAGGTGGTGGTCCACTGCGTATCGCTGAA
GGAGAAAGATGTGGTGGTCCACTGCGTATTACTGAAGGAGGAGGAGGTGG
TGGTCCACTGCGTATCGCTGAAGGAGAAAGATGTGGTGGTCCACTGCGTA
TTGCTGAACGAGAAGAAGATGGTCCACTGCGTATTACTGAAGGAGGAGGA
GGTGGTGGTCCATAGTGTATTACTGAAGGCGGAGGATGAGGTGGTTCACT
ACGTTTTACTGAAGGAGGAGGTGGTGGGCCATCGCGCATTACTGGAGGAG
GAAGTGGTGGTTCACTCTGCATTGCTGAAGGAGGAGGAGGTGGTGGTCGA
CTGCGTATTACTGAAGGAGGAGGAGGTGGTAGTCCACAGTGTATTACTGA
AGGCAGAAGTTGAGGTGGTTCACTACGTTTTACTGAAGGAGGAGGTGGTG
GGCCATCGCGCATTACTGGAGGAGGAAGTGGTGGTTCACTCTGCATCGCT
GATGAAGGAGGAGGTGGTGGTCGACTGCGTATTACTGAAGGAGGAGGAGG
TGGTAGTCCACAGTGTATTACTGAAGGCAGAAGTTGAGGTGGTTCACTAC
GTTTTACTGAAGGAGGAGGTGGTGGGCCATCGCGCATTACTGGAGGAGGA
AGTGGTGGTTCACTCTGCATCGCTGAAGGAGGAGGAGGTGGTGGTCGACT
GCGTATTACTGAAGGAGGAGGAGGTGGTAGTCCACAGTGTATTACTGAAG
GCAGAAGTTGAGGTGGTTCACTACGTTTTACTGAAGGAGGAGGTGGTGGG
CCATCGCGCATTACTGGAGGAGGAAGTGGTGGTTCACTCTGCATCGCTGA
AGGAGGAGGAGGTGGTGGTCGACTGCGTATTACTGAAGGAGGAGGAGGTG
TTCGACTTCTGCTTATTTCAGTTGATGGGCATTGAGGTGAATGAGGtcat
aatgattttaatgaatATGTATCCTTGTAGAGGGTTGTGGTAGTTGGAAT
TTGCAAACTTCCACTGGGTGGTGTTTTGGTTGAAGGAATGAAATTGTCTG
TCGGTGGTGATTGAGGTTATGATGTAtgtgaattttctttgaatgccATG
TGATCATAAGTAAGAAACTACACATAGAGCGTATGTTTGTATATGTCAAC
TTAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012540-exon-sc0000145-1491911889:481551..481973 | TCONS_00012540-exon-sc0000145-1491911889:481551..481973 | Clytia hemisphaerica | exon |
| TCONS_00012540-exon-sc0000145-1510915933:481551..481973 | TCONS_00012540-exon-sc0000145-1510915933:481551..481973 | Clytia hemisphaerica | exon |
| TCONS_00012540-exon-sc0000145-1575043694:481551..481973 | TCONS_00012540-exon-sc0000145-1575043694:481551..481973 | Clytia hemisphaerica | exon |
| TCONS_00012540-exon-sc0000145-1491911889:482040..482099 | TCONS_00012540-exon-sc0000145-1491911889:482040..482099 | Clytia hemisphaerica | exon |
| TCONS_00012540-exon-sc0000145-1510915933:482040..482099 | TCONS_00012540-exon-sc0000145-1510915933:482040..482099 | Clytia hemisphaerica | exon |
| TCONS_00012540-exon-sc0000145-1575043694:482040..482099 | TCONS_00012540-exon-sc0000145-1575043694:482040..482099 | Clytia hemisphaerica | exon |
| TCONS_00012540-exon-sc0000145-1491911889:483756..484057 | TCONS_00012540-exon-sc0000145-1491911889:483756..484057 | Clytia hemisphaerica | exon |
| TCONS_00012540-exon-sc0000145-1510915933:483756..484057 | TCONS_00012540-exon-sc0000145-1510915933:483756..484057 | Clytia hemisphaerica | exon |
| TCONS_00012540-exon-sc0000145-1575043694:483756..484057 | TCONS_00012540-exon-sc0000145-1575043694:483756..484057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000145 | supercontig | sc0000145:481551..484057 + |
Blast
The following BLAST results are available for this feature:
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