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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012572 ID=TCONS_00012572|Name=TCONS_00012572|organism=Clytia hemisphaerica|type=transcript|length=2558bpRun BLAST on NCBI protein sequence of TCONS_00012572-protein >TCONS_00012572-protein ID=TCONS_00012572-protein|Name=TCONS_00012572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp MAQLSFDEYGRPFIVLRDQDKQERLTGVEALKSHIMAAKTVANTLKTSLGRun BLAST on NCBI transcript from alignment at sc0000145:442005..452683- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012572 ID=TCONS_00012572|Name=TCONS_00012572|organism=Clytia hemisphaerica|type=transcript|length=10679bp|location=Sequence derived from alignment at sc0000145:442005..452683- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000145:442005..452683- >TCONS_00012572 ID=TCONS_00012572|Name=TCONS_00012572|organism=Clytia hemisphaerica|type=CDS|length=16200bp|location=Sequence derived from alignment at sc0000145:442005..452683- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012572 vs. Swiss-Prot (Human)
Match: TCPE (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1) HSP 1 Score: 870.152 bits (2247), Expect = 0.000e+0 Identity = 403/533 (75.61%), Postives = 483/533 (90.62%), Query Frame = 2
Query: 266 NMAQLSFDEYGRPFIVLRDQDKQERLTGVEALKSHIMAAKTVANTLKTSLGPKGMDKILVSPDNDVTITNDGATILEKMHVEHEIAKLLVDLSKSQDDEIGDGTTGVVVLAGALLEHAESLLDKGIHPIRIADGYEQASQIAVAHLDKISDSFEVNPNNKEPLIETAMTTLGSKIASRCHRQLAEIAVDAILSVADFERRDVDFELIKMQTKEGGELDDTVLVKGVIVDKDMSHPQMPKQIKDCKLAILTCPFEPPKPKTKHKLDVTSVEDYQKLREYEKETFVKMIKQVKDTGANLAICQWGFDDEANHLLLQNELPAVRWVGGPEIELIAIATGGRIVPRFNELTSDKLGNAGVVRELTFGTTKDRMLVIEDCKNTRAVTIFIRGGNKMILDEGKRSIHDALCVIRNLVRDNRIVYGGGAAEIACSLAVSAEADKVASLEQYAMHAFADALENVPNALAENSGLSPIETTSKVKAMQVAQNNPRLGVDCVHAGTNDMKEQHVIETLHGKRQQITLATQLVRMILKIDDIRK 1864
+M L+FDEYGRPF++++DQD++ RL G+EALKSHIMAAK VANT++TSLGP G+DK++V D DVT+TNDGATIL M V+H+IAKL+V+LSKSQDDEIGDGTTGVVVLAGALLE AE LLD+GIHPIRIADGYEQA+++A+ HLDKISDS V+ + EPLI+TA TTLGSK+ + CHRQ+AEIAV+A+L+VAD ERRDVDFELIK++ K GG L+DT L+KGVIVDKD SHPQMPK+++D K+AILTCPFEPPKPKTKHKLDVTSVEDY+ L++YEKE F +MI+Q+K+TGANLAICQWGFDDEANHLLLQN LPAVRWVGGPEIELIAIATGGRIVPRF+ELT++KLG AG+V+E++FGTTKD+MLVIE CKN+RAVTIFIRGGNKMI++E KRS+HDALCVIRNL+RDNR+VYGGGAAEI+C+LAVS EADK +LEQYAM AFADALE +P AL+ENSG++PI+T ++V+A QV + NP LG+DC+H GTNDMK+QHVIETL GK+QQI+LATQ+VRMILKIDDIRK
Sbjct: 3 SMGTLAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRK 535 The following BLAST results are available for this feature:
BLAST of TCONS_00012572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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