|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012569 ID=TCONS_00012569|Name=TCONS_00012569|organism=Clytia hemisphaerica|type=transcript|length=2407bpRun BLAST on NCBI protein sequence of TCONS_00012569-protein >TCONS_00012569-protein ID=TCONS_00012569-protein|Name=TCONS_00012569-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp MMFLKPRYISSSFQTCKRLFSKTSIMASDEALLEVRKKTGLITLNRPKALRun BLAST on NCBI transcript from alignment at sc0000145:362285..383945- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012569 ID=TCONS_00012569|Name=TCONS_00012569|organism=Clytia hemisphaerica|type=transcript|length=21661bp|location=Sequence derived from alignment at sc0000145:362285..383945- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000145:362285..383945- >TCONS_00012569 ID=TCONS_00012569|Name=TCONS_00012569|organism=Clytia hemisphaerica|type=CDS|length=17010bp|location=Sequence derived from alignment at sc0000145:362285..383945- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00012569 vs. Swiss-Prot (Human)
Match: HIBCH (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Homo sapiens GN=HIBCH PE=1 SV=2) HSP 1 Score: 404.445 bits (1038), Expect = 6.832e-133 Identity = 197/346 (56.94%), Postives = 254/346 (73.41%), Query Frame = 1
Query: 196 ASDEALLEVRKKTGLITLNRPKALNALNLPMIRTIHPVLKAWNTDNDIGCVIIKGAGEKAFCAGGDVKSI--AVNRGSDLGKEFFKEEYRLNLEIGQLSKPYVALINGITMGGGVGLSVHGRYRVATEKTLFAMPETAIGLFPDVGGGHFLPRLEGKLGLFLALTGNRLKARDLLFSGVATHFVDTRELPYLEDELLNLDDPSHETVKDVLDSYHNKCH-DAEARFTLHDKVDTINKLFGGKDIESIFQSLEKDGSEWAVKQLETLKKMSPVSMKITMRQLEEGGKLSLAETLKMEYRMSQGCMENDDFYEGIRAVLIDRDHSPKWSPSTIEGVSQELEDSYFQRL 1224
A++E LLE + TG+ITLNRPK LNAL L MIR I+P LK W D + +IIKGAG KAFCAGGD++ I A + FF+EEY LN +G KPYVALI+GITMGGGVGLSVHG++RVATEK LFAMPETAIGLFPDVGGG+FLPRL+GKLG FLALTG RLK RD+ +G+ATHFVD+ +L LE++LL L PS E + VL++YH + D + F L + +D IN F +E I ++L++DGS +A++QL+ + KMSP S+KIT+RQL EG +L E L MEYR+SQ CM DF+EG+RAVLID+D SPKW P+ ++ V++E +++F+ L
Sbjct: 34 AAEEVLLEKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINSCFSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVLIDKDQSPKWKPADLKEVTEEDLNNHFKSL 379 The following BLAST results are available for this feature:
BLAST of TCONS_00012569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.