TCONS_00012383 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012383
Unique NameTCONS_00012383
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012383 ID=TCONS_00012383|Name=TCONS_00012383|organism=Clytia hemisphaerica|type=transcript|length=1507bp
aataaaaagtgtttttcaaacattttctttgtaatttacAGTAACTAAAG
CTGACCTGTTTCTTGCTTTagtgataaaataaaaaatggcagAAAATGAC
ATAGGCGACTGGTTTCGAAATATCCcaataatttcaagatggtggtTCAC
TTTATCCATCATGTTTCCTTTGCTTGGTCGCATTGGACTCTTACACCCTT
ACTATATGGTTCTCAGTTTTCAATTGATTTTTTACAAGTTTCAGATCTGG
CGATTGTTCACTTGCATCGTCTTCTTTCCACTTAGCCCACAAACGGGTTT
CCATTATCTGATCAATTTATACTTCTTGTACAGTTATTCCACCAGGTTAG
AAACAGGAGTGTTTGATGGTCGGCCAGCAGactatttgtttttattgatc
ttCAATTCCATTGCATTGATTCTTCTTGGATTTGCCATGAATTTAATGTT
TTTGATGGACGCAATCATCCTAAGTGTGTTATACATCTGGTGTCAACTGA
ACAAAGATCAAATCGTTTCATTTTGGTTTGGTACTCAATTCAAGGCCATG
TACCTTCCATGGGTGTTGGCTGCTTTCAATATGATCTTGGGACAAGGCGG
ATTGATGGAAATAATTGGCATCTTTGTTGGACACATGTACTTCTTCTTGA
TGTTCAAGTATCCTCAAGATTTTGGTGGCCGAAGATTTTTGACCACTCCT
GCTTTCTTATACAATTATTTACCAAACCGAAGAGGTGGCGTTGCTGGATT
TGGTCAAGCACCTGCATCCAGACGTGATAATTCCAATCGTGGTGCAAATG
CTTTCGGAGGTTCCGGCAACCGACTTGGCGATGATTAATATTTGGTTCAT
GTCATGTTCCTGTCAAACATTCATCAAGAGCCTCCGAGTTGTTTCGTTGA
TATATTATTACAGGgatttattttatgaaaaattaattataacTTTTTAC
TAGGTAATTCCATATTACATGATTTCCATATTACATGATCGTCGCCCGCT
AAATATCCTTGGTGACGGATCACATAATAAGAACGAGCACTTTCGTCGGA
CATGAATTGCTAAAGTCATATTAtctgaaatataattctatgaaaaatat
tattgttgatattttgaagtcaataaaATGCTGCTTCTTTCcaatgtcaa
aaaagtttttttgcagaaaaaataaactttggaatcttttatttaaaatg
cttagtgaatattttgaatatttgagGTGCAGTTAGGTTAAATTAAGTTT
TCGTACTTTTTATGTGTTATCCTCTTTATTTATACACAATATATATGAAA
TACCTGAATATACATAAAAACTGGTGCTAGAAAATTTCCTGAACTTTTTG
TCGAACTCTTGTATATTCATGATaagcaccactgcaatgacttaacgaaa
ttatgcaacttttctgtctTTGAGTTgattccacccaatacgtcactttt
tctatcattaagtgacgtattgggtggaaaatttcaaaagttctcacaag
actctcc
Run BLAST on NCBI

protein sequence of TCONS_00012383-protein

>TCONS_00012383-protein ID=TCONS_00012383-protein|Name=TCONS_00012383-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MAENDIGDWFRNIPIISRWWFTLSIMFPLLGRIGLLHPYYMVLSFQLIFY
KFQIWRLFTCIVFFPLSPQTGFHYLINLYFLYSYSTRLETGVFDGRPADY
LFLLIFNSIALILLGFAMNLMFLMDAIILSVLYIWCQLNKDQIVSFWFGT
QFKAMYLPWVLAAFNMILGQGGLMEIIGIFVGHMYFFLMFKYPQDFGGRR
FLTTPAFLYNYLPNRRGGVAGFGQAPASRRDNSNRGANAFGGSGNRLGDD
Run BLAST on NCBI

transcript from alignment at sc0000144:175148..177916+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012383 ID=TCONS_00012383|Name=TCONS_00012383|organism=Clytia hemisphaerica|type=transcript|length=2769bp|location=Sequence derived from alignment at sc0000144:175148..177916+ (Clytia hemisphaerica)
aataaaaagtgtttttcaaacattttctttgtaatttacAGTAACTAAAG
CTGACCTGTTTCTTGCTTTagtgataaaataaaaaatggcagAAAATGAC
ATAGGCGACTGGTTTCGAAATATCCcaataatttcaagatggtggtTCAC
TTTATCCATCATGTTTCCTTTGCTTGGTCGCATTGGACTCTTACACCCTT
ACTATATGGTTCTCAGTTTTCAATTGATTTTTTACAAGTTTCAGGTTTGT
AtgaaatgatttctttttagcTAAAAGCTCATTAGAGTTgttgggaattt
ttttatttgaactaAAACGTATTATTTGCTGATTTACTTGATGATAAACT
TATGTGTATTTTTATTAGAATTAatattatttttagaatttaaccTCTTA
TCTCTTTCAGATCTGGCGATTGTTCACTTGCATCGTCTTCTTTCCACTTA
GCCCACAAACGGGTTTCCATTATCTGATCAATTTATACTTCTTGTACAGT
TATTCCACCAGGTTAGAAACAGGTAAGTGAAAAAGTCTAACTTGCactaa
aatgttttgaaaacagtattcaaatttttattttaaagtagGCTTATCAC
TTGTTCACTTGAACACTTGTTCAATACCATTTCCAAATTTTCCAGATGAT
GGTTTCAGGGGCATAATAGACCAAGTCGTTTTATTATCGATGTATCGATG
CAGTTATAAATAATACTAAGAACTACTTACAAGTTAAAAATTAATTCTTT
AGGAGTGTTTGATGGTCGGCCAGCAGactatttgtttttattgatcttCA
ATTCCATTGCATTGATTCTTCTTGGATTTGCCATGAATTTAATGGTAAGA
TTTACACATTTGTTTGTTGGCTTCTTTTTACCTTTCGTTTTTGCCCAAAG
CCTATAACTATCAATAACTAGCTAACTTTCCAATCGTTACTGCAATATTC
TTCCCTTCAAGAACATTGGAAATTGTATCTTCATTATTTTATAACCAATA
GTTTTTGATGGACGCAATCATCCTAAGTGTGTTATACATCTGGTGTCAAC
TGAACAAAGATCAAATCGTTTCATTTTGGTTTGGTACTCAATTCAAGGTA
AGTTTGGTTAAAATGACCTATAAATTAATTTAAGGTTGTTTTACCTACTT
CAATATTCAGTCAAACATTCTTGAATTGAAGATCTATTTTACCTTGAAGT
GGTCTCAACCTTATTAAATTCAAATCGGCTCAAAATATAAACAATACAAG
ATTGATTCAGATTTAATTTACTCAATTCTCTTCTGTTTTAGGCCATGTAC
CTTCCATGGGTGTTGGCTGCTTTCAATATGATCTTGGGACAAGGGTAAAT
ACTGTGAAACAAATTGTTCTTTCTTTACAAGACTAGTTTTGATTTCTctg
tttttatttacaaattgtTCTAGTGAGTCGATATACAGAGTATGTTGGAC
TTTTGCTGCTATGAAATGTTAATAAACAGGATTTAACTTTATAAACCATA
GTAATAAGTGATTTTGGTAATCGGTAAGCTAATCTTTAATCTCGAACACA
TTTATTGTCTATTACAGCGGATTGATGGAAATAATTGGCATCTTTGTTGG
ACACATGTACTTCTTCTTGATGTTCAAGTATCCTCAAGATTTTGGTGGCC
GAAGATTTTTGACCACTCCTGCTTTCTTGTAAGCATATAAACAAGTTGTT
GATCGATTAGTGCATGAATAGTCAAAACAGTGTTGCTTGGGTtaaggaaa
aattattttcgattcCGAAATGACCtccttcttataaaaaagaaaggctt
TTAAATTCTTCATAGATGTGATATGATATTCATACTAAGAAATTACTAAC
AAGCAGCACGTTCTTTGGTCTACTGATCAAAATTTTGCGAACATTTTCAC
CTCAAAGCTTTTCAGCTCCTATATctttataattaaaaaatttcatcaca
TTGGTCACAATTTTTCTTAGATACAATTATTTACCAAACCGAAGAGGTGG
CGTTGCTGGATTTGGTCAAGCACCTGCATCCAGACGTGATAATTCCAATC
GTGGTGCAAATGCTTTCGGAGGTTCCGGCAACCGACTTGGCGATGATTAA
TATTTGGTTCATGTCATGTTCCTGTCAAACATTCATCAAGAGCCTCCGAG
TTGTTTCGTTGATATATTATTACAGGgatttattttatgaaaaattaatt
ataacTTTTTACTAGGTAATTCCATATTACATGATTTCCATATTACATGA
TCGTCGCCCGCTAAATATCCTTGGTGACGGATCACATAATAAGAACGAGC
ACTTTCGTCGGACATGAATTGCTAAAGTCATATTAtctgaaatataattc
tatgaaaaatattattgttgatattttgaagtcaataaaATGCTGCTTCT
TTCcaatgtcaaaaaagtttttttgcagaaaaaataaactttggaatctt
ttatttaaaatgcttagtgaatattttgaatatttgagGTGCAGTTAGGT
TAAATTAAGTTTTCGTACTTTTTATGTGTTATCCTCTTTATTTATACACA
ATATATATGAAATACCTGAATATACATAAAAACTGGTGCTAGAAAATTTC
CTGAACTTTTTGTCGAACTCTTGTATATTCATGATaagcaccactgcaat
gacttaacgaaattatgcaacttttctgtctTTGAGTTgattccacccaa
tacgtcactttttctatcattaagtgacgtattgggtggaaaatttcaaa
agttctcacaagactctcc

Coding sequence (CDS) from alignment at sc0000144:175148..177916+

>TCONS_00012383 ID=TCONS_00012383|Name=TCONS_00012383|organism=Clytia hemisphaerica|type=CDS|length=5271bp|location=Sequence derived from alignment at sc0000144:175148..177916+ (Clytia hemisphaerica)
atggcagAAAATGACATAGGCGACTGGTTTCGAAATATCCcaataatttc
aagatggtggtTCACTTTATCCATCATGTTTCCTTTGCTTGGTCGCATTG
GACTCTTACACCCTTACTATATGGTTCTCAGTTTTCAATTGATTTTTTAC
AAGTTTCAGATCTGGCGATTGTTCACTTGCATCGTCTTCTTTCCACTTAG
CCCACAAACGGGTTTCCATTATCTGATCAATTTATACTTCTTGTACAGTT
ATTCCACCAGGTTAGAAACAGGAGTGTTTGATGGTCGGCCAGCAGactat
ttgtttttattgatcttCAATTCCATTGCATTGATTCTTCTTGGATTTGC
CATGAATTTAATGTTTTTGATGGACGCAATCATCCTAAGTGTGTTATACA
TCTGGTGTCAACTGAACAAAGATCAAATCGTTTCATTTTGGTTTGGTACT
CAATTCAAGGCCATGTACCTTCCATGGGTGTTGGCTGCTTTCAATATGAT
CTTGGGACAAGGCGGATTGATGGAAATAATTGGCATCTTTGTTGGACACA
TGTACTTCTTCTTGATGTTCAAGTATCCTCAAGATTTTGGTGGCCGAAGA
TTTTTGACCACTCCTGCTTTCTTATACAATTATTTACCAAACCGAAGAGG
TGGCGTTGCTGGATTTGGTCAAGCACCTGCATCCAGACGTGATAATTCCA
ATCGTGGTGCAAATGCTTTCGGAGGTTCCGGCAACCGACTTGGCGATGAT
TAAatggcagAAAATGACATAGGCGACTGGTTTCGAAATATCCcaataat
ttcaagatggtggtTCACTTTATCCATCATGTTTCCTTTGCTTGGTCGCA
TTGGACTCTTACACCCTTACTATATGGTTCTCAGTTTTCAATTGATTTTT
TACAAGTTTCAGATCTGGCGATTGTTCACTTGCATCGTCTTCTTTCCACT
TAGCCCACAAACGGGTTTCCATTATCTGATCAATTTATACTTCTTGTACA
GTTATTCCACCAGGTTAGAAACAGGAGTGTTTGATGGTCGGCCAGCAGac
tatttgtttttattgatcttCAATTCCATTGCATTGATTCTTCTTGGATT
TGCCATGAATTTAATGTTTTTGATGGACGCAATCATCCTAAGTGTGTTAT
ACATCTGGTGTCAACTGAACAAAGATCAAATCGTTTCATTTTGGTTTGGT
ACTCAATTCAAGGCCATGTACCTTCCATGGGTGTTGGCTGCTTTCAATAT
GATCTTGGGACAAGGCGGATTGATGGAAATAATTGGCATCTTTGTTGGAC
ACATGTACTTCTTCTTGATGTTCAAGTATCCTCAAGATTTTGGTGGCCGA
AGATTTTTGACCACTCCTGCTTTCTTATACAATTATTTACCAAACCGAAG
AGGTGGCGTTGCTGGATTTGGTCAAGCACCTGCATCCAGACGTGATAATT
CCAATCGTGGTGCAAATGCTTTCGGAGGTTCCGGCAACCGACTTGGCGAT
GATTAAatggcagAAAATGACATAGGCGACTGGTTTCGAAATATCCcaat
aatttcaagatggtggtTCACTTTATCCATCATGTTTCCTTTGCTTGGTC
GCATTGGACTCTTACACCCTTACTATATGGTTCTCAGTTTTCAATTGATT
TTTTACAAGTTTCAGATCTGGCGATTGTTCACTTGCATCGTCTTCTTTCC
ACTTAGCCCACAAACGGGTTTCCATTATCTGATCAATTTATACTTCTTGT
ACAGTTATTCCACCAGGTTAGAAACAGGAGTGTTTGATGGTCGGCCAGCA
GactatttgtttttattgatcttCAATTCCATTGCATTGATTCTTCTTGG
ATTTGCCATGAATTTAATGTTTTTGATGGACGCAATCATCCTAAGTGTGT
TATACATCTGGTGTCAACTGAACAAAGATCAAATCGTTTCATTTTGGTTT
GGTACTCAATTCAAGGCCATGTACCTTCCATGGGTGTTGGCTGCTTTCAA
TATGATCTTGGGACAAGGCGGATTGATGGAAATAATTGGCATCTTTGTTG
GACACATGTACTTCTTCTTGATGTTCAAGTATCCTCAAGATTTTGGTGGC
CGAAGATTTTTGACCACTCCTGCTTTCTTATACAATTATTTACCAAACCG
AAGAGGTGGCGTTGCTGGATTTGGTCAAGCACCTGCATCCAGACGTGATA
ATTCCAATCGTGGTGCAAATGCTTTCGGAGGTTCCGGCAACCGACTTGGC
GATGATTAAatggcagAAAATGACATAGGCGACTGGTTTCGAAATATCCc
aataatttcaagatggtggtTCACTTTATCCATCATGTTTCCTTTGCTTG
GTCGCATTGGACTCTTACACCCTTACTATATGGTTCTCAGTTTTCAATTG
ATTTTTTACAAGTTTCAGATCTGGCGATTGTTCACTTGCATCGTCTTCTT
TCCACTTAGCCCACAAACGGGTTTCCATTATCTGATCAATTTATACTTCT
TGTACAGTTATTCCACCAGGTTAGAAACAGGAGTGTTTGATGGTCGGCCA
GCAGactatttgtttttattgatcttCAATTCCATTGCATTGATTCTTCT
TGGATTTGCCATGAATTTAATGTTTTTGATGGACGCAATCATCCTAAGTG
TGTTATACATCTGGTGTCAACTGAACAAAGATCAAATCGTTTCATTTTGG
TTTGGTACTCAATTCAAGGCCATGTACCTTCCATGGGTGTTGGCTGCTTT
CAATATGATCTTGGGACAAGGCGGATTGATGGAAATAATTGGCATCTTTG
TTGGACACATGTACTTCTTCTTGATGTTCAAGTATCCTCAAGATTTTGGT
GGCCGAAGATTTTTGACCACTCCTGCTTTCTTATACAATTATTTACCAAA
CCGAAGAGGTGGCGTTGCTGGATTTGGTCAAGCACCTGCATCCAGACGTG
ATAATTCCAATCGTGGTGCAAATGCTTTCGGAGGTTCCGGCAACCGACTT
GGCGATGATTAAatggcagAAAATGACATAGGCGACTGGTTTCGAAATAT
CCcaataatttcaagatggtggtTCACTTTATCCATCATGTTTCCTTTGC
TTGGTCGCATTGGACTCTTACACCCTTACTATATGGTTCTCAGTTTTCAA
TTGATTTTTTACAAGTTTCAGATCTGGCGATTGTTCACTTGCATCGTCTT
CTTTCCACTTAGCCCACAAACGGGTTTCCATTATCTGATCAATTTATACT
TCTTGTACAGTTATTCCACCAGGTTAGAAACAGGAGTGTTTGATGGTCGG
CCAGCAGactatttgtttttattgatcttCAATTCCATTGCATTGATTCT
TCTTGGATTTGCCATGAATTTAATGTTTTTGATGGACGCAATCATCCTAA
GTGTGTTATACATCTGGTGTCAACTGAACAAAGATCAAATCGTTTCATTT
TGGTTTGGTACTCAATTCAAGGCCATGTACCTTCCATGGGTGTTGGCTGC
TTTCAATATGATCTTGGGACAAGGCGGATTGATGGAAATAATTGGCATCT
TTGTTGGACACATGTACTTCTTCTTGATGTTCAAGTATCCTCAAGATTTT
GGTGGCCGAAGATTTTTGACCACTCCTGCTTTCTTATACAATTATTTACC
AAACCGAAGAGGTGGCGTTGCTGGATTTGGTCAAGCACCTGCATCCAGAC
GTGATAATTCCAATCGTGGTGCAAATGCTTTCGGAGGTTCCGGCAACCGA
CTTGGCGATGATTAAatggcagAAAATGACATAGGCGACTGGTTTCGAAA
TATCCcaataatttcaagatggtggtTCACTTTATCCATCATGTTTCCTT
TGCTTGGTCGCATTGGACTCTTACACCCTTACTATATGGTTCTCAGTTTT
CAATTGATTTTTTACAAGTTTCAGATCTGGCGATTGTTCACTTGCATCGT
CTTCTTTCCACTTAGCCCACAAACGGGTTTCCATTATCTGATCAATTTAT
ACTTCTTGTACAGTTATTCCACCAGGTTAGAAACAGGAGTGTTTGATGGT
CGGCCAGCAGactatttgtttttattgatcttCAATTCCATTGCATTGAT
TCTTCTTGGATTTGCCATGAATTTAATGTTTTTGATGGACGCAATCATCC
TAAGTGTGTTATACATCTGGTGTCAACTGAACAAAGATCAAATCGTTTCA
TTTTGGTTTGGTACTCAATTCAAGGCCATGTACCTTCCATGGGTGTTGGC
TGCTTTCAATATGATCTTGGGACAAGGCGGATTGATGGAAATAATTGGCA
TCTTTGTTGGACACATGTACTTCTTCTTGATGTTCAAGTATCCTCAAGAT
TTTGGTGGCCGAAGATTTTTGACCACTCCTGCTTTCTTATACAATTATTT
ACCAAACCGAAGAGGTGGCGTTGCTGGATTTGGTCAAGCACCTGCATCCA
GACGTGATAATTCCAATCGTGGTGCAAATGCTTTCGGAGGTTCCGGCAAC
CGACTTGGCGATGATTAAatggcagAAAATGACATAGGCGACTGGTTTCG
AAATATCCcaataatttcaagatggtggtTCACTTTATCCATCATGTTTC
CTTTGCTTGGTCGCATTGGACTCTTACACCCTTACTATATGGTTCTCAGT
TTTCAATTGATTTTTTACAAGTTTCAGATCTGGCGATTGTTCACTTGCAT
CGTCTTCTTTCCACTTAGCCCACAAACGGGTTTCCATTATCTGATCAATT
TATACTTCTTGTACAGTTATTCCACCAGGTTAGAAACAGGAGTGTTTGAT
GGTCGGCCAGCAGactatttgtttttattgatcttCAATTCCATTGCATT
GATTCTTCTTGGATTTGCCATGAATTTAATGTTTTTGATGGACGCAATCA
TCCTAAGTGTGTTATACATCTGGTGTCAACTGAACAAAGATCAAATCGTT
TCATTTTGGTTTGGTACTCAATTCAAGGCCATGTACCTTCCATGGGTGTT
GGCTGCTTTCAATATGATCTTGGGACAAGGCGGATTGATGGAAATAATTG
GCATCTTTGTTGGACACATGTACTTCTTCTTGATGTTCAAGTATCCTCAA
GATTTTGGTGGCCGAAGATTTTTGACCACTCCTGCTTTCTTATACAATTA
TTTACCAAACCGAAGAGGTGGCGTTGCTGGATTTGGTCAAGCACCTGCAT
CCAGACGTGATAATTCCAATCGTGGTGCAAATGCTTTCGGAGGTTCCGGC
AACCGACTTGGCGATGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006963XLOC_006963Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012383-proteinTCONS_00012383-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012383-exon-sc0000144-1491911889:175148..175391TCONS_00012383-exon-sc0000144-1491911889:175148..175391Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1510915933:175148..175391TCONS_00012383-exon-sc0000144-1510915933:175148..175391Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1575043694:175148..175391TCONS_00012383-exon-sc0000144-1575043694:175148..175391Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1491911889:175558..175669TCONS_00012383-exon-sc0000144-1491911889:175558..175669Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1510915933:175558..175669TCONS_00012383-exon-sc0000144-1510915933:175558..175669Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1575043694:175558..175669TCONS_00012383-exon-sc0000144-1575043694:175558..175669Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1491911889:175900..175991TCONS_00012383-exon-sc0000144-1491911889:175900..175991Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1510915933:175900..175991TCONS_00012383-exon-sc0000144-1510915933:175900..175991Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1575043694:175900..175991TCONS_00012383-exon-sc0000144-1575043694:175900..175991Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1491911889:176149..176244TCONS_00012383-exon-sc0000144-1491911889:176149..176244Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1510915933:176149..176244TCONS_00012383-exon-sc0000144-1510915933:176149..176244Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1575043694:176149..176244TCONS_00012383-exon-sc0000144-1575043694:176149..176244Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1491911889:176439..176491TCONS_00012383-exon-sc0000144-1491911889:176439..176491Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1510915933:176439..176491TCONS_00012383-exon-sc0000144-1510915933:176439..176491Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1575043694:176439..176491TCONS_00012383-exon-sc0000144-1575043694:176439..176491Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1491911889:176715..176825TCONS_00012383-exon-sc0000144-1491911889:176715..176825Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1510915933:176715..176825TCONS_00012383-exon-sc0000144-1510915933:176715..176825Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1575043694:176715..176825TCONS_00012383-exon-sc0000144-1575043694:176715..176825Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1491911889:177118..177916TCONS_00012383-exon-sc0000144-1491911889:177118..177916Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1510915933:177118..177916TCONS_00012383-exon-sc0000144-1510915933:177118..177916Clytia hemisphaericaexon
TCONS_00012383-exon-sc0000144-1575043694:177118..177916TCONS_00012383-exon-sc0000144-1575043694:177118..177916Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000144supercontigsc0000144:175148..177916 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
144.453	140.971	62.5447	52.8337	35.0903	25.0783	59.6684	61.6838	59.4243	58.9138	50.4541	47.529	45.2452	39.5685	40.8806	40.5067	53.2045	54.4698	31.6411	42.0793	47.9645	48.6083	77.5328	76.5003	39.9103	44.0785	49.4716	41.5179	68.8348	62.5592
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022764Peptidase_S54_rhomboid_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00012383 vs. Swiss-Prot (Human)
Match: DERL1 (Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.381e-98
Identity = 146/250 (58.40%), Postives = 185/250 (74.00%), Query Frame = 2 
Query:   95 NDIGDWFRNIPIISRWWFTLSIMFPLLGRIGLLHPYYMVLSFQLIFYKFQIWRLFTCIVFFPLSPQTGFHYLINLYFLYSYSTRLETGVFDGRPADYLFLLIFNSIALILLGFAMNLMFLMDAIILSVLYIWCQLNKDQIVSFWFGTQFKAMYLPWVLAAFNMILGQGGLMEIIGIFVGHMYFFLMFKYPQDFGGRRFLTTPAFLYNYLPNRRGGVAGFGQAPASRR---DNSNRGANAFGGSGNRLGDD 835
            +DIGDWFR+IP I+R+WF  ++  PL+G++GL+ P Y+ L  +   Y+FQIWR  T   +FP+ P TGF YL+NLYFLY YSTRLETG FDGRPADYLF+L+FN I +++ G AM++  LM  +I+SVLY+W QLN+D IVSFWFGT+FKA YLPWV+  FN I+G   + E+IG  VGH+YFFLMF+YP D GGR FL+TP FLY +LP+RRGGV+GFG  PAS R   D +  G     G G RLGD 
Sbjct:    2 SDIGDWFRSIPAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYFPVGPGTGFLYLVNLYFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFLYRWLPSRRGGVSGFGVPPASMRRAADQNGGGGRHNWGQGFRLGDQ 251
The following BLAST results are available for this feature:
BLAST of TCONS_00012383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DERL11.381e-9858.40Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1[more]
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