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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012382 ID=TCONS_00012382|Name=TCONS_00012382|organism=Clytia hemisphaerica|type=transcript|length=4658bpRun BLAST on NCBI protein sequence of TCONS_00012382-protein >TCONS_00012382-protein ID=TCONS_00012382-protein|Name=TCONS_00012382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=872bp MCNCCGGDSYHPKNKVVPDEVGQAQYGRTNGLSCPLHPLQLIGWFFITLFRun BLAST on NCBI transcript from alignment at sc0000144:159441..166489+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012382 ID=TCONS_00012382|Name=TCONS_00012382|organism=Clytia hemisphaerica|type=transcript|length=7049bp|location=Sequence derived from alignment at sc0000144:159441..166489+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000144:159441..166489+ >TCONS_00012382 ID=TCONS_00012382|Name=TCONS_00012382|organism=Clytia hemisphaerica|type=CDS|length=23571bp|location=Sequence derived from alignment at sc0000144:159441..166489+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00012382 vs. Swiss-Prot (Human)
Match: ZDHC1 (Probable palmitoyltransferase ZDHHC1 OS=Homo sapiens GN=ZDHHC1 PE=2 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 7.230e-48 Identity = 122/311 (39.23%), Postives = 160/311 (51.45%), Query Frame = 1
Query: 160 PKNKVVPDEVGQAQYGRTNGLSCPLHPLQLIGWFFITLFGITHFGILVHYLPSEWVPFGIIFPACGYVIHLFYHFFALILDPADPAVRRKG-SFLRKIFDRSKHTHVIENSFCYICQTQVSSRSKHCSACNKCVSDFDHHCKWLNNCVGGRNYKLFLGCCISAILTALLMFVIDFYLMIAYYTDQEN--------VLKRAVLNTWQLFVPVCK-----EAYIIFVIVNGXXXXXXXXXXXXXXXFHCYLLCKNLSTYDYIMQSRTATSASKASLPSDVETGDEPAPPVLRPLSSQSHTYQEVDDVRKEKSS 1050
P P Q Q R NG S P HPLQ++ W F + FGILV LP WVP G + HL H A+ +DPAD VR K + IF+RS+H HVIE+ C +C VS+RSKHCSACNKCV FDHHCKWLNNCVG RNY+LFL SA+L LL+ ++ Y+ + ++ + VLK + W +F+P A + + LL L++ L+GHLL FH YL+ L+TY+YI+Q R A V E PP +RP+ + +R E
Sbjct: 24 PAQPSGPSPELQGQRSRRNGWSWPPHPLQIVAWLLYLFFAVIGFGILVPLLPHHWVPAGYACMGAIFAGHLVVHLTAVSIDPADANVRDKSYAGPLPIFNRSQHAHVIEDLHCNLCNVDVSARSKHCSACNKCVCGFDHHCKWLNNCVGERNYRLFLHSVASALLGVLLLVLVATYVFVEFFVNPMRLRTNRHFEVLKNHT-DVWFVFLPAAPVETQAPAILALAALLILLGLLSTALLGHLLCFHIYLMWHKLTTYEYIVQHRPPQEA------KGVHRELESCPPKMRPIQEMEFYMRTFRHMRPEPPG 327 The following BLAST results are available for this feature:
BLAST of TCONS_00012382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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