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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012327 ID=TCONS_00012327|Name=TCONS_00012327|organism=Clytia hemisphaerica|type=transcript|length=1617bp
AGGAAATAAATGTTTGCCAGGAATGCTTTTTCAAGATGTGTTTGCCCCCC
TCCCTCTTTTGTCCCCAAAACTtgttggatttttcgatttgggaggggtt
aaaaTTTCCTGCTCTTTCAAGCATTATCGTCAGTtagttttaaaatcttt
tacaaacgACATTCCTAATGTATGAGTTTAAATACAGTATATTGGCTTCA
GGTTGCATTTCATAGAGGATTGCTGGAATCTGCCATTTCTTCGGACGATT
TTCCACGACGGTCATGGTTGAAGGACTTTTTGTGGTTACTATACCGATTT
TTAAAGGTTGTTTCAGCGAGGCCGGTGTATTTCAATGGGGTGTCATCAGT
ATCGCCGTCGGTCGATATCGTAGCTTCGTATATGGTATTTTCTGCAAGGC
ATTCTCCGTTCATCGGGCACTGATATTTCTCACGAAGCAGTTGCAGGTGT
tgtctaccgtgaaaagcacaggtcgaaattaTATATCGACCAAAGTGAGT
TTTTGGTGGCGTAACAGTGAAAGTTCTGTATTTCTCTTTGAAGTGATAGG
ATGACATTGTCGACAGAATCTCCAATTTCAAAAAGTGTTGAATCATCAGC
AAGTAGCTCAAGTTGACTATTGGTTGAGCTTGGCATATCTTCAACATTGA
TTGTGAAGGCTACAGGTCCAATAATCGAGCCTTGAGGTACTCCATCGTCC
ATATTCGACTGGACACGTTGTTGAGCTTTTACCATTGATTACTGTGAATT
GGGATCGTTCAGAAAGATAATTGTGAATAAAATTGTAAATGTCACCACAT
AAACCAGAAGCTTTGAATTTCTGGTGTAAAACATCATGTGAAATACTGTC
AAACGCTTTCTTTAGATCGATAAAGAGCACACCAACGACTTTGTTTTGGT
CGATAGCCTTTCGCCATGTTTCTGTAAGGTGTAGCAGGAGGTCCTCAGAG
GATCGCTTTTCTCGAAACCCCCACTGATGGTCGTTTTGTAAATTATGTAC
ATTAAGGTGATCTTTTATCTGTGAACAAACATAATGTTCGATAACTTTGC
TTGGAAGGCTCAATAAAGAAATTGGTTTATAATTGGAACAATCCTTTTTG
GATCCTTTGTTCTTGTACACGCTGCACACCTTGGCAGTTTTCCATTCGGT
TGGGTATTTGCAGTGTTCAATGCATTTTCGTAGAACTTGGATGAGACCAA
TAGAAGATGCGCTCTCATTGATTTTAAGATCTTTGGCTGATATCAAATCA
GCTCCGGCTGCTTTGCCAACTTTGATAGCTTTTTTGAGCGATTTAGTGAA
TAGTTCAAAGTCTACGTTGATCTCTGAAACTGTTGGTGTTACTCGGTGGA
AGTGTTCAATCAATTGACCTTCCCAGTCATCAAGAGCAAGAGCTAGCTCT
TTTCCAACATTTGCAAAGAACGAGTTCATTATGTTGGATTTTTCGTCATC
TTTACTATGTAACTTATTGTTAGTATCAATCAATGGGCCAATATGTGATT
TTAGAGTCACCGGTAAAACTTTTCACtgttttccaaaaagtttttgaaga
gtCAACGTTTTCAAACTTAGCCTTCCAATATTGTCCTTTgactgatttga
ttttgttggaaCACTTG Run BLAST on NCBI protein sequence of TCONS_00012327-protein >TCONS_00012327-protein ID=TCONS_00012327-protein|Name=TCONS_00012327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MNSFFANVGKELALALDDWEGQLIEHFHRVTPTVSEINVDFELFTKSLKK
AIKVGKAAGADLISAKDLKINESASSIGLIQVLRKCIEHCKYPTEWKTAK
VCSVYKNKGSKKDCSNYKPISLLSLPSKVIEHYVCSQIKDHLNVHNLQND
HQWGFREKRSSEDLLLHLTETWRKAIDQNKVVGVLFIDLKKAFDSISHDV
LHQKFKASGLCGDIYNFIHNYLSERSQFTVINGKSSTTCPVEYGRWSTSR
LDYWTCSLHNQC Run BLAST on NCBI transcript from alignment at sc0000143:82228..83844 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012327 ID=TCONS_00012327|Name=TCONS_00012327|organism=Clytia hemisphaerica|type=transcript|length=1617bp|location=Sequence derived from alignment at sc0000143:82228..83844 (Clytia hemisphaerica)
CAAGTGttccaacaaaatcaaatcagtcAAAGGACAATATTGGAAGGCTA
AGTTTGAAAACGTTGactcttcaaaaactttttggaaaacaGTGAAAAGT
TTTACCGGTGACTCTAAAATCACATATTGGCCCATTGATTGATACTAACA
ATAAGTTACATAGTAAAGATGACGAAAAATCCAACATAATGAACTCGTTC
TTTGCAAATGTTGGAAAAGAGCTAGCTCTTGCTCTTGATGACTGGGAAGG
TCAATTGATTGAACACTTCCACCGAGTAACACCAACAGTTTCAGAGATCA
ACGTAGACTTTGAACTATTCACTAAATCGCTCAAAAAAGCTATCAAAGTT
GGCAAAGCAGCCGGAGCTGATTTGATATCAGCCAAAGATCTTAAAATCAA
TGAGAGCGCATCTTCTATTGGTCTCATCCAAGTTCTACGAAAATGCATTG
AACACTGCAAATACCCAACCGAATGGAAAACTGCCAAGGTGTGCAGCGTG
TACAAGAACAAAGGATCCAAAAAGGATTGTTCCAATTATAAACCAATTTC
TTTATTGAGCCTTCCAAGCAAAGTTATCGAACATTATGTTTGTTCACAGA
TAAAAGATCACCTTAATGTACATAATTTACAAAACGACCATCAGTGGGGG
TTTCGAGAAAAGCGATCCTCTGAGGACCTCCTGCTACACCTTACAGAAAC
ATGGCGAAAGGCTATCGACCAAAACAAAGTCGTTGGTGTGCTCTTTATCG
ATCTAAAGAAAGCGTTTGACAGTATTTCACATGATGTTTTACACCAGAAA
TTCAAAGCTTCTGGTTTATGTGGTGACATTTACAATTTTATTCACAATTA
TCTTTCTGAACGATCCCAATTCACAGTAATCAATGGTAAAAGCTCAACAA
CGTGTCCAGTCGAATATGGACGATGGAGTACCTCAAGGCTCGATTATTGG
ACCTGTAGCCTTCACAATCAATGTTGAAGATATGCCAAGCTCAACCAATA
GTCAACTTGAGCTACTTGCTGATGATTCAACACTTTTTGAAATTGGAGAT
TCTGTCGACAATGTCATCCTATCACTTCAAAGAGAAATACAGAACTTTCA
CTGTTACGCCACCAAAAACTCACTTTGGTCGATATAtaatttcgacctgt
gcttttcacggtagacaACACCTGCAACTGCTTCGTGAGAAATATCAGTG
CCCGATGAACGGAGAATGCCTTGCAGAAAATACCATATACGAAGCTACGA
TATCGACCGACGGCGATACTGATGACACCCCATTGAAATACACCGGCCTC
GCTGAAACAACCTTTAAAAATCGGTATAGTAACCACAAAAAGTCCTTCAA
CCATGACCGTCGTGGAAAATCGTCCGAAGAAATGGCAGATTCCAGCAATC
CTCTATGAAATGCAACCTGAAGCCAATATACTGTATTTAAACTCATACAT
TAGGAATGTcgtttgtaaaagattttaaaactaACTGACGATAATGCTTG
AAAGAGCAGGAAAttttaacccctcccaaatcgaaaaatccaacaAGTTT
TGGGGACAAAAGAGGGAGGGGGGCAAACACATCTTGAAAAAGCATTCCTG
GCAAACATTTATTTCCT Coding sequence (CDS) from alignment at sc0000143:82228..83844 >TCONS_00012327 ID=TCONS_00012327|Name=TCONS_00012327|organism=Clytia hemisphaerica|type=CDS|length=789bp|location=Sequence derived from alignment at sc0000143:82228..83844 (Clytia hemisphaerica)
ATGAACTCGTTCTTTGCAAATGTTGGAAAAGAGCTAGCTCTTGCTCTTGA
TGACTGGGAAGGTCAATTGATTGAACACTTCCACCGAGTAACACCAACAG
TTTCAGAGATCAACGTAGACTTTGAACTATTCACTAAATCGCTCAAAAAA
GCTATCAAAGTTGGCAAAGCAGCCGGAGCTGATTTGATATCAGCCAAAGA
TCTTAAAATCAATGAGAGCGCATCTTCTATTGGTCTCATCCAAGTTCTAC
GAAAATGCATTGAACACTGCAAATACCCAACCGAATGGAAAACTGCCAAG
GTGTGCAGCGTGTACAAGAACAAAGGATCCAAAAAGGATTGTTCCAATTA
TAAACCAATTTCTTTATTGAGCCTTCCAAGCAAAGTTATCGAACATTATG
TTTGTTCACAGATAAAAGATCACCTTAATGTACATAATTTACAAAACGAC
CATCAGTGGGGGTTTCGAGAAAAGCGATCCTCTGAGGACCTCCTGCTACA
CCTTACAGAAACATGGCGAAAGGCTATCGACCAAAACAAAGTCGTTGGTG
TGCTCTTTATCGATCTAAAGAAAGCGTTTGACAGTATTTCACATGATGTT
TTACACCAGAAATTCAAAGCTTCTGGTTTATGTGGTGACATTTACAATTT
TATTCACAATTATCTTTCTGAACGATCCCAATTCACAGTAATCAATGGTA
AAAGCTCAACAACGTGTCCAGTCGAATATGGACGATGGAGTACCTCAAGG
CTCGATTATTGGACCTGTAGCCTTCACAATCAATGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012327-exon-sc0000143-1491911889:82228..83844 | TCONS_00012327-exon-sc0000143-1491911889:82228..83844 | Clytia hemisphaerica | exon |
| TCONS_00012327-exon-sc0000143-1510915933:82228..83844 | TCONS_00012327-exon-sc0000143-1510915933:82228..83844 | Clytia hemisphaerica | exon |
| TCONS_00012327-exon-sc0000143-1575043694:82228..83844 | TCONS_00012327-exon-sc0000143-1575043694:82228..83844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143 | supercontig | sc0000143:82228..83844 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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