TCONS_00012197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012197
Unique NameTCONS_00012197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012197 ID=TCONS_00012197|Name=TCONS_00012197|organism=Clytia hemisphaerica|type=transcript|length=1231bp
ctcgaatttcagtcaggtttaaaaaggggtacttttacccatattataat
aacattacccccgtcttttgccagtttggtataatatgttatgaattgcg
cgATTTTGCTGTGCGACGATAGCTCAAGTGGTAAGGCGTCGGGTTTGGAA
ACCAAGGtagcttgcatttggtggttcgaaccgAGGTGTGGGAGTATAGT
TTAAGAATTAGCAAAATAGCTTCAAATagtcaaattcagaaaaaactaag
tccagaaatcagaaaaaacagagttagagataggaaatagagaaaaagag
gagaagggcggaattggtgattgaaacTAGATCTTTCCGTTCGCTGTCAG
tgacaaaaatctaaatttcttttttttcaaagttgacaACCTGGCTGACA
ACAGAACACTCCATCATCGTCAATCTTGAACTCGAAAAAGTAATTTATAT
TTTGATCAAAGATGACgagAGGTAATCAGAGAGAACTTGCTCGTGCCAAA
AACGCTAAAAAACTAGAAAAAGCAAAGAAGGCTGAAGGGAATAGCGATTT
TCAAAAACGAAAAGAATCTGATGCGGACAAGATGAGAGAGAAACAGAAGA
AAGCGGAAGAACGGAAACAAATGGAAGCATCCGGAATAACACCTCCAGAG
GAAGAAGCAAAAGGCAAGAAGAAGGACGGCAAGAAGAAGTGAAAACATCT
CAACCATAATCTTTCATGTGAACGTCTCTTAAGAGTAATCACAACcatta
taaaatataaaaataacaaCAATGGGAATTTCCTTCAGAAGAAATTTGCT
Ttcatctgaaaaatatttgatacacacttttttgtacataacaaaatttt
ataaatagaTAAATGAATAACTGTCTGAAAGATCGAAACAGCCGGATGGT
TCTTGCCAGAACCGGTAAAATCCATTATTAGGCTCGgttattaagcagat
attcaataggtaaaagttggttaataaatccaataccCAACGAAAAcata
ttgaatatatgttttattatatacctaagGCAAAAACAAGACATTAATTA
TGTTAATAGTCGAACGTTTCacttaaaacactcccataatcgaacgttca
aatgttattttatttttaatgattttcttaaatactttgaatcataaaat
ttgttcatgaaattgacaatagatttattttaatgaatttctttgataca
acaagagcgacaaaaaaaatcaaactttgaa
Run BLAST on NCBI

transcript from alignment at sc0000141:179908..188072-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012197 ID=TCONS_00012197|Name=TCONS_00012197|organism=Clytia hemisphaerica|type=transcript|length=8165bp|location=Sequence derived from alignment at sc0000141:179908..188072- (Clytia hemisphaerica)
CTCGAATTTCAGTCAGGTTTAAAAAGGGGTACTTTTACCCATATTATAAT
AACATTACCCCCGTCTTTTGCCAGTTTGGTATAATATGTTATGAATTGCG
CGATTTTGCTGTGCGACGATAGCTCAAGTGGTAAGGCGTCGGGTTTGGAA
ACCAAGGTAGCTTGCATTTGGTGGTTCGAACCGAGGTGTGGGAGTATAGT
TTAAGAATTAGCAAAATAGCTTCAAATAGTCAAATTCAGAAAAAACTAAG
TCCAGAAATCAGAAAAAACAGAGTTAGAGATAGGAAATAGAGAAAAAGAG
GAGAAGGGCGGAATTGGTGATTGAAACTAGATCTTTCCGTTCGCTGTCAG
TGACAAAAATCTAAATTTCTTTTTTTTCAAAGTTGACAACCTGGCTGACA
ACAGAACACTCCATCATCGTCAATCTTGAACTCGAAAAAGTAATTTATAT
TTTGATCAAAGATGACGAGTAAGTATTTATTTGAGATGTATTTTTTTTAT
GCTCAATGATCCAGCTCAAACACCTCAAACACTGTTCATTTTTGCTGATC
TTTGCTTTCTGTTGATTTTGTTTTCATTTGTTTGTTTGAAAAGTTTCAAA
ATTTCCATGCAGCAAATTACCTAAAAAGTGTATTAACATAGCTAAATTTG
AAAAGAAATATAGTTTAAGACACATAACCTTTAATACTTGCTACATCAAG
TTTTGTGGTGTTTTTCAATAAATATGACAAGTAAGCAATACAGTTCCTTT
TTTTCTTTCTTGTAAACTGAGGTTTATAAAGCAAGTGGATAAACTGGGGT
TTAGAGATGTTTCTTAAAGTGACAAAAAAAGCGAGTGGATAAACTGAGGT
TTAGAGACATTTGTTAAAGTGACGAAAAAAGCAAGTGGATATAAACTTAG
GTTTAGAAGAGACATTTGTCAAAGTGACGAAAAAAGCGAGTGGATAAAGT
GAAGTTTAGAGATATTTGTTACAGTGAAAATAAAATTACAAGAAAAGAGT
CTGTACCGTGAGTGGTCCTAAATTTACAACTCACATTTTTTTATCACATT
AATTGACATCTTGACATTATAGTCATCTTGTTAGATGTTTTGTTTCGAGA
CTTCTTGAAATACAGTTTATTGTTCAACTTGGAGAGGGAATGTTTGTAAA
CATAGAATTTTTTTCATAGTAGTTATTTGGGGGGGTCGGATTTAGGCAGG
GCTGTCGGATTTCACGTGCGTTTGGTTTGGGAACGCGAAACACGAACGCA
AACTACCCATGTCTAAACTTTTCAATATATCTCCAGAACTAACAGATTTT
TTGAAGATCTGTAAAAAGGTCTAAGTTCCTGAATAGTTTTACTATGTTCT
ATGGAAAAATCATAAGCATCAGTCAAATACTCGTTCATCTATTTAAGATT
GAACACAAAAATTTGCGAAGAAAAATATACCTTGAGCACAAAAAATGCTT
TTTTAAACACTTTTTTCCACCGAAAAACAAATAACTTTTACAGACTTACC
TTCCCCAAACATTGAAGAAGCCTCTACTAATTAAAGTAAATGAGATAGGA
TAAGATAAAACCTTAAAATCAACCAGAATTTACAACCTTTCTTCCAAAGC
AAAAGACGTGCTTTTCTCGCCGCCATCTTGAATTTAAAATGAGAATTCTA
GAGAATTCCATTCGTTTCCAGCTCCCGCGGTCTTTTTTCATCCAATCANN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCACACTGTCTGGCCA
GTCAACTTTGATGATTTTTGAAGGGAAAGCACAAATTTTTCCAAGACTAA
AATAAAAACTAACTGTAGTCATCTATCTATGACGCAAACAAAAGTATTCC
TACTAAACTCAACACGAATCAAACAATCAAGAAAAAAAACAGAAGTTCAA
CATTACAAACTTCATCGCAAACCAAATGGCAATGTACGAAAAAGATTTGT
GGCTGGATGGCAACGAAAAGAATTTTCACCCGACCGGTGGACTGGGTCGG
CCTTACTTAGGAATATCTTTTTCTTTTCCTTGGTAAATATTCTTTAGACA
AGTTAGAGTGGGAAGATTCACCATTAAAAATGTTATCTCCTTTGATAAAG
TTAAGGCCCTCATACGGTACCCTTGTCAATAATAAATCAATATTCTGCAA
AAAAAGATTTTAGTGATGATTTCTTGGAAAATAAAAGATTTTCCACAAAA
TTTGACTATACAGTAATGGGGCAAAAAATTTCATACCCTCTCACTGTGAA
AAATAATTCATTGAAAATAAGCGTCTGTAAATGTTATTTCCCTTTTAAGG
TAGTTACACAAAATAAAAGCAAAACTTACCTCAAAAGGGATGGCTGTTGA
AAATTACCTAAATACATGTGCCAACTGCTGCCATCCCATATCAACTAAGC
TTAAAACTAAGAACTTGATTTCTTACCATCTTCAATCCCATGAGCACAAG
AAAGCTGGTGGAGTGTTTTTACAAAACCAATCAAACAGCACTCAGTGTTT
TAGCCCAAAAATCACACCTACACGTTATGAAGTCATAATTATAAACCTTT
TTTTGAAGATGTTTTCATCCCTAAAAATTTCTTTTGACATGATATAGAGA
ATTCCCCAAAGTCATTTCGCATGAAATAATTGCTTTCTCAAGATTTCTAA
GCCAAACAAAAGACAAACACAGACCAAATCCATTGGTGAAGAGTAAAAAA
AAAAGAAAAACATATAGGCGCCCAAGTCAAGACAGGAATTATAATCTGTC
AATCAAAACAAAAGTCATCTTTTAAAAGAGCAAAACATTGCTTGCGAAAA
CGAAAGTACTAGACAGTCAGACAAACAAACAAACAAACAAAGTGACATAC
AGACTACGATTATTAGTATATAGACAATTAGAAGCGAAAAATTGTCGTTT
TGATTGACAGGCAAATACTTAAATCTTATCGGATGTGGAATAACAAGCTG
CAAGTAGATACGTTTGTGACCAGGCGTCATAAGTGTAGTAAAAACTCTTT
GAACGCCTAACAATCTGGCTAGAAAGATATGTATTTAGATTTTATCATGA
TGGTATCTTAATGTCAGCCTCCATTTCTTTTCTTCTTTTTTTTCTGTTCA
CTAATGATGATTTAATGAAATCTATTTTCTCTTTTTTCATTTAGGAGGTA
ATCAGAGAGAACTTGCTCGTGCCAAAAACGCTAAAAAACTAGAAAAAGCA
AAGAAGGCTGAAGGGAATAGCGATTTTCAAAAACGAAAAGAATCGTAAGT
ACCTTTGAACTTCTTATTGATTAATTTTTAGCTGAAAAAGAACCTTTTAC
CCTATTATATACCCTATACCCTAATTCTAGGTTTTTAGGGGCGGTTCGGA
ATTAGAAAGGGGGCTTTTCCTTTACCACTCCCTCAATTTTTTATCTAATT
GTTTTTTTTGAATGAAAATTGGTACACAAGATCCTTGTAATACATATAAG
CCATATAAGGTAACTTCTGGTAATAATCTTTTGACGACGTCACTCAATAT
ACCTAAAGTTCCCTGAGTTTTTAAAAAGTTTATAAAATAAGTTCATAAAC
GCCTAATTTAGGACGTTGTGTGGACCTGCCTGAATGATAGAAAGGTGCCC
AGTAGTAAAACTTCAAATTGATTCGCTAGAGCACAGAATAAAGTAAAACA
GGGCCAATTTTGGAGGTTCTTGAATCACTCGTTGACAAAAATTGGTCAAA
AAACGGTCGATATCTTAAAAAAGTAGATTTTTGTCAAATTTTTGCATTTT
TGTGAACTTTTTTTTTATCTAAATTTTCATAACTCTAACTAATAATCAGG
CCAAAGTATTATTTTCTTTTTTACGGCCAGATTTGAACATTCCCGGCTTT
AAAATTCTATTCTACAATATACCAAACATTCCATTCTACTAATAAACCCT
GCTTTTTTGAATTGCACCTTTTATGAAAAAGTATAAACCCTAGTATGAAA
TCTTTCGTTCGTGATAGTTTATACTAACAGTTCTTACAGAGACCTACCGG
GTGACCCACGAAAAAGTTCAGACGTTTCCCGACGTCTTGAGGCCAAACAA
ATGTCCCAAAGTGCTTGGAGTTTTGATATTTAGAAAGTAGATATCCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TTCATGCAATCAATTAGAAAATCACTTACAAATTGACTTATTTAACGAGT
TTTATGACATTAATAATTAATAAAAACACCTTTGAAAGTAGTTTTTATAA
AAATTGGCGCTTTCATAGATTTTTTATTAAAAACTGTATATCAAAAACGT
CTAAAAATACCAAATTTGATACCCCTTTTTTACGTGTTTTTTACACTTTC
CGTAAAGTGAATTTTGACTTTAAAAGCTNNTTGATAGCTCAAATTTTAAG
TTAGGATATCTACTTTCTAAATATCAAAACTCCAAGCACTTTGGGACATT
TGCTCGGCCTCAAGACGTCGGGAAACGTCTGAACTTTTTCGTGGGTCACC
CGGTATTAAATTCAAGGTCATCGTGCAAGTCTTTATTTGCCTAAACAGCG
GCCATTCATATAGTAGGTACGCAGTGAAGGGGGAGAGAAAGGGGTTGAGC
AAAAGCATAGTCTATTGTTTGAATCACGTCGTTTCTATTCTTCTTTGTGT
AAGGGAGAGGGGTGTCAGAAATTTCTACGTATATACTAGGGGTCATGTGT
TACAGTATACCCATAAAATGTTTTTTTCGGTCAAACTATTTGCGTGTCTC
AGACAATCAAACCTTTCTTCGACGTTTTCTCGTGACTTTTTTATATGAAT
CTGCTAATAAGAAATTTGTGTATTGATATGTGTGATTGTTATATTCTTTC
AGTGATGCGGACAAGATGAGAGAGAAACAGAAGAAAGCGGAAGAACGGAA
ACAAATGGAAGCATCCGGAATAACACCTCCAGAGGAAGAAGCAAAAGGCA
AGAAGAAGGACGGCAAGAAGAAGTGAAAACATCTCAACCATAATCTTTCA
TGTGAACGTCTCTTAAGAGTAATCACAACCATTATAAAATATAAAAATAA
CAACAATGGGAATTTCCTTCAGAAGAAATTTGCTTTCATCTGAAAAATAT
TTGATACACACTTTTTTGTACATAACAAAATTTTATAAATAGATAAATGA
ATAACTGTCTGAAAGATCGAAACAGCCGGATGGTTCTTGCCAGAACCGGT
AAAATCCATTATTAGGCTCGGTTATTAAGCAGATATTCAATAGGTAAAAG
TTGGTTAATAAATCCAATACCCAACGAAAACATATTGAATATATGTTTTA
TTATATACCTAAGGCAAAAACAAGACATTAATTATGTTAATAGTCGAACG
TTTCACTTAAAACACTCCCATAATCGAACGTTCAAATGTTATTTTATTTT
TAATGATTTTCTTAAATACTTTGAATCATAAAATTTGTTCATGAAATTGA
CAATAGATTTATTTTAATGAATTTCTTTGATACAACAAGAGCGACAAAAA
AAATCAAACTTTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006863XLOC_006863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012197-exon-sc0000141-1575043694:187605..188072TCONS_00012197-exon-sc0000141-1575043694:187605..188072Clytia hemisphaericaexon
TCONS_00012197-exon-sc0000141-1575043694:182379..182478TCONS_00012197-exon-sc0000141-1575043694:182379..182478Clytia hemisphaericaexon
TCONS_00012197-exon-sc0000141-1575043694:179908..180570TCONS_00012197-exon-sc0000141-1575043694:179908..180570Clytia hemisphaericaexon
TCONS_00012197-exon-sc0000141-1510915933:187605..188072TCONS_00012197-exon-sc0000141-1510915933:187605..188072Clytia hemisphaericaexon
TCONS_00012197-exon-sc0000141-1510915933:182379..182478TCONS_00012197-exon-sc0000141-1510915933:182379..182478Clytia hemisphaericaexon
TCONS_00012197-exon-sc0000141-1510915933:179908..180570TCONS_00012197-exon-sc0000141-1510915933:179908..180570Clytia hemisphaericaexon
TCONS_00012197-exon-sc0000141-1491911889:187605..188072TCONS_00012197-exon-sc0000141-1491911889:187605..188072Clytia hemisphaericaexon
TCONS_00012197-exon-sc0000141-1491911889:182379..182478TCONS_00012197-exon-sc0000141-1491911889:182379..182478Clytia hemisphaericaexon
TCONS_00012197-exon-sc0000141-1491911889:179908..180570TCONS_00012197-exon-sc0000141-1491911889:179908..180570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:179908..188072 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
64.5954	63.7096	75.3702	91.9453	39.2894	31.5985	50.7359	64.5734	47.111	31.9063	36.8296	37.8179	42.3118	50.1333	26.5047	22.3198	47.2257	47.1224	70.8782	53.7886	58.9319	52.7521	43.6955	44.5185	42.6552	47.1029	38.1413	35.9796	20.6223	19.6811
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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