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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012095 ID=TCONS_00012095|Name=TCONS_00012095|organism=Clytia hemisphaerica|type=transcript|length=1770bpRun BLAST on NCBI transcript from alignment at sc0000137:287011..315578+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00012095 ID=TCONS_00012095|Name=TCONS_00012095|organism=Clytia hemisphaerica|type=transcript|length=28568bp|location=Sequence derived from alignment at sc0000137:287011..315578+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00012095 vs. Swiss-Prot (Human)
Match: NSUN5 (Probable 28S rRNA (cytosine-C(5))-methyltransferase OS=Homo sapiens GN=NSUN5 PE=1 SV=2) HSP 1 Score: 325.094 bits (832), Expect = 3.008e-104 Identity = 173/415 (41.69%), Postives = 248/415 (59.76%), Query Frame = 2
Query: 110 AKKGSIKSLCFSSEYRNKRKLYALTFETLKHKRILEKIINLTALWKENNQISKALQYVLCYETLFGKGLHQNSK-YEKFISTHEDKLKATLDDLQ------KEEPGLFTDTKKNQVV-LPRYVRVNVLKCSMDVAINRFQTDGFNL----VSGKEINEISGDEFVLDKDIPNVLVFPPNTDLHQYSLYKEGKLFLQDKASCLSAYVLNPPERSLVIDGCAAPGNKTTHLACILNNNGSVYSFDLDKKRLRTMEMLVQKAGATCVTPKHQDFLKVRHDDKLFSKVEYILLDPSCSGSGIVGRMDNYVDDDEENATNEVNEKRLKALSGFQTAALSHALTFPNVQKVLYSTCSIHKQENEDVIEKAFKRFEEQFDLCHVMPSWKSRGQGEWELAYKCIRAVPEKDFTNGFFVAMFER 1318
+++GSIK L +SS ++N ++LYAL ET ++ +L+ +I L + ++ L VL YE L GKG ++ + H+ +LKA L L+ + E L ++ LPR+VRVN LK D ++ F+ GF+ S ++ + G F+LD +P +LVFP TDLH++ LY+ G L LQD+ASCL A +L+PP S VID CAAPGNKT+HLA +L N G +++FDLD KRL +M L+ +AG +C +DFL V D + +V YILLDPSCSGSG+ R EE + RL AL+GFQ AL HALTFP++Q+++YSTCS+ ++ENEDV+ A ++ F L +P+W RG + A C+RA PE ++GFFVA+ ER
Sbjct: 16 SRQGSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYELLLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSR------QLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIER 424 The following BLAST results are available for this feature:
BLAST of TCONS_00012095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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