TCONS_00011947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011947
Unique NameTCONS_00011947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1947

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011947 ID=TCONS_00011947|Name=TCONS_00011947|organism=Clytia hemisphaerica|type=transcript|length=1947bp
CAAATGTTGAAGAGAAACCCTGGTAAAAGCAACCAAGAGTTACATCCTGA
CGATCTGATTGGTTAATATTTGATGACGCCCGCCTACGTCAACGATCTTG
TTCgaccaaatttcttttcttctcaAGAAGTGACGTTAGGGAATGTGACG
CAGTTTTCATCATACAGCTAACACGCAAGAAGTCAAAACGTAACAAACCG
AACAGTATGGATGTTGCACAAAGTGGACATGTGTTCCAACCACCTATGGG
ACCACCTCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTTGCAGCAGCAGT
CGGTCATTCAAACAAATCAACAATTACAGCAGCAACTTCAATCAATGCAC
GATAATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATACTGACTCGGAG
GCCTTCCTACagGAAAATTCTTGATGACCTGGCAGCAGATTCTCCAGTCA
AAATGGAAAACTATGATGATAATGGAAGTAGTGATGCTTCAAGTCCTGGT
GGACCAGAAGAATTGACAGATAAACAACAACAAGCTCAACAGCAACATCA
GCACCAGCAACAACAGCAACAGGCTCAGCAACAAGCACAACAACAATATC
AAAGTATTCAACTCAATGGCGTAATTGCTCCCCCATCTTCAGTTGGTGGC
ACAGTGGTTCAGCTAAATGATGGCCAGGCTTACACAATAAAAGGTTCTCT
TCCTGTTGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAG
AAGAAGCAACTAGGAAAAGAGAACTAAGGTTATACAAAAATAGgGAAGCA
GCCAGAGAATGCAGGCGGaagaaaaaagaatatgtaaaATGTCTAGAAAA
TAGAGTTGCAGTACTAGAAAACCAAAATAAAGCTCTAATAGAAGAACTAA
AATCTCTAAAGGACTTATACTGTAGTAAAGGAGATTAAGTTGGTGGTTTG
TGTCATAATATAGAGCTGATGTTTGTAAATAGACGTATGTTTTAGAGTTT
TTATGgtttaaatatcttttttcttAACTGATgactaaaaacaacaaaat
gatatttttattaGCACTTTAGAAGGATATTATTTTTcatatgaatttaa
aaaaagtgaaatcttATTTGTTAAGTGTACAAAAATTTGGAGTGGAGTGG
GTCAGCCTTACTTTCTTTGCATGAATCAATTGCACACTAATTTACAATCA
ACGTAATTCCTTATCCTGGACAAGGAAATGAGTGATTTAGCTgaattata
ttttcattttaattacTTTCTTATCTGTTTAGCTCAACAGTTTGTTATCC
TCAGAGCAAACTTTTTAAGATGACATCAAATATTATTTCGgccaattttt
catttattttcaaaacccATGTTGCAATTTTCCTGATGTCATATTGACTG
TTTGTTTTATGATTAAATCTGTTTACAAATTTGTTCCCTAAACAAGATGA
TGTTTTCATCTAAATGGATTTctaaacgtcaattgacgtcaAGTATCGTT
AAAGTGGCTTAAGACCCTTCACTTAGATTTTGTGCACGGTTAATAATAAT
GTATTATTTTTCagtttatatatattttttatcgtCTCAATTTATCCACT
TTTCgtgcttttctttctttttttttgtcatggGAATTTTGGAATTGTTT
GTTAAGTCCTACCCAGTTCCatgttttatttgtttcaatattCTGGTGTT
TTTGCTTTGGTNGTCCTACCCAGTTCCatgttttatttgtttcaatattC
TGGTGTTTTTGCTTTGGTATGCattagtttttttatatatttgtttGTCT
GTTTTTGAGCCTGTATTAATACTGTAAATATTTTACATTATCTCGATAAT
ATTAATAACTAGTCCTTTCCGTGACAAACTTATTATTGTACATACAATAT
ACCTGTATCCTTACAaccaaaatacaaaattattaCCAAATTAAACT
Run BLAST on NCBI

transcript from alignment at sc0000134:267570..272534+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011947 ID=TCONS_00011947|Name=TCONS_00011947|organism=Clytia hemisphaerica|type=transcript|length=4965bp|location=Sequence derived from alignment at sc0000134:267570..272534+ (Clytia hemisphaerica)
CAAATGTTGAAGAGAAACCCTGGTAAAAGCAACCAAGAGTTACATCCTGA
CGATCTGATTGGTTAATATTTGATGACGCCCGCCTACGTCAACGATCTTG
TTCgaccaaatttcttttcttctcaAGAAGTGACGTTAGGGAATGTGACG
CAGTTTTCATCATACAGCTAACACGCAAGAAGTCAAAACGTAACAAACCG
AACAGTAAGAATTCATTATACTTGTATACTGTATTTGAACCTGAACGTAG
AgattttgtttgttattttttggaaagaaactTCTTTTTGTAAACCTTTC
AGCATTGGTTCTTAGTATTGAATTAAATTTGAGTGAGAAAAAAGCGAAGA
CTAAGGAATTATTATGGTTATATTAGGTAtgcttttttaaaatttttact
tcaattAAACTTTCAAATATATTGTGAATTTATTGTCTGATTGGTTTAAT
TATTTATTATATCAGGTATGGATGTTGCACAAAGTGGACATGTGTTCCAA
CCACCTATGGGACCACCTCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTT
GCAGCAGCAGTCGGTCATTCAAACAAATCAACAATTACAGCAGCAACTTC
AATCAATGCACGATAATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATA
CTGACTCGGAGGCCTTCCTACaggtatttcaaatttttttataccTGTTG
CTTTATGTACCGTGAGATTGTACAAAATCGCGCATGTTCACGTGCGCAAT
TTCGTAAAAATTTTGTCTTTATTACGTGAGTGATTCGTCGCTCTCCACTC
CTCCTTATTTCTTCCTGGAAAAgcatgtaaaatacaaagttaaataaaaa
caaaaatggtagagtagagctgcgagcagagctgcacagttgcatttttt
aaTGATCAGCCCTAGGTCTTTTAttttagggctatgcatgttagcttcca
ctgatgtaagttacccaatctcacggtagtaAAGCTAGACAAATTTTTGG
ACCTGCAcatagttttttgtttgtttttatttttgcgcGTAAAACTTATG
CCAGTTATTAGGAACAGGCAGCTTGCTTGGAATTGGGTTGAAGAATCCCT
TGCAAATCATGAGCTTATTTTTCCCCTTTTTAACTGGTTTAAGTGATGAT
TTGTTGGAGATCATGAAAGTATATTTCATTTTATGGTGAATATCACCAgg
ttttttaagatgaaaatctTCCTTTTTATCTAGGAAAATTCTTGATGACC
TGGCAGCAGATTCTCCAGTCAAGATGGAAAACTATGATGATAATGGAAGT
AGTAATTCTTCAAGTCCTGGTGGACCAGAAGAATTGACAGATAAACAACA
ACAAGCTCAACAGCAACATCAGCACCAGCAACAACAGCAACAGGCTCAGC
AACAAGCACAACAACAANTTTCTGACCGCGTTATCACCATGTTCCAATGA
ATGACGTCATGTTTGGAAAACAATTCGAATCAGAAGAGCTTTGATTGGTT
GGCATTGTTAGTTATTGGTTTTACATACTAGAATATAATTATATACAAAT
GTTGAAGAGAAACCCTGGTAAAAGCAACCAAGAGTTACATCCTGACGATC
TGATTGGTTAATATTTGATGACGCCCGCCTACGTCAACGATCTTGTTCga
ccaaatttcttttcttctcaAGAAGTGACGTTAGGGAATGTGACGCAGTT
TTCATCATACAGCTAACACGCAAGAAGTCAAAACGTAACAAACCGAACAG
TAAGAATTCATTATACTTGTATACTGTATTTGAACCTGAACGTAGAgatt
ttgtttgttattttttggaaagaaactTCTTTTTGTAAACCTTTCAGCAT
TGGTTCTTAGTATTGAATTAAATTTGAGTGAGAAAAAAGCGAAGACTAAG
AATTATTATGGTTATATTAGGTatgcttttttaaaaattttacttcAATT
AAACTTTCAAATATATTGTGAATTTATTATATGATTGGTTTAATTATTTA
TTATATCAGGTATGGATGTTGCACAAAGTGGACATGTGTTCCAACCACCT
ATGGGACCACCACCGAGCTCTCTTAGTGAAAAGTCAGCTATTTTGCAGCA
GCAGTCGGTCATTCAAACAAATCAACAATTACAGCAGCAACTTCAATCGA
TGCATGATAATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATACTGACT
CGGAGGCCTTCCTACaggtatttcaatttttttttatacctGTTGCTTta
tgtaccgtgagattgggtaacttttgcatcagtggaggctaacatgcata
gccctcaaatgaaagacctgactggtcattaaaatcGTGCCTTTCAATAA
GACGTGCGCGATCGCGCTCGCGATGTAAAACGCTCGTCAATCTCGTATGG
TGAGCGAAAAATTGTGCATGTCAATTATACTTTGATTCTATAGAAAAATA
TCTAAGGGCGTTTTGTACAAAATCGTGCACGTGAACGTGCGCAATTTCGT
AAAAATTTTGTCTTTATTACGTGAGTGATTCGTTGCTCTCCTCCTTATTT
CTTCCTGGAAAAgcatgtaaaatacaaagttaaataaaaacaaaaatggt
agagtagagctgcgagcagagctgcgtagttgtattttttaatgaTCGGC
CAGGTCTTTTAttttagggctatgcatgttagcctccactgatgtaagtt
acccaatctcactgTAGTAAAGCTAGACAAATTTTTGGACCTGCAcatag
tttttgtttgtttttatttttgcgcGTAAAATTTATGCAAGTTATTAGGA
ACAGGCAGCTTGCTTGGAATTGGGTTGAAGAATGCCTTGCAAATTATGAG
CTTATTTTTCCCCTTTTTAACTGGTTTAAGTGATGATTTGTTGGAGATCA
TGAAAGTATATTTCATTTTATGGTGTATATCACCAGGTTTTTTAGATGAA
AATCTTCCTTTTTATCTAGAAAAATTCTTGATGACCTGGCAGCAGATTCT
CCAGTCAAAATGGAAAACTATGATGATAATGGAAGTAGTGATGCTTCAAG
TCCTGGTGGACCAGAAGAATTGACAGATAAACAACAACAAGCTCAACAGC
AACATCAGCACCAGCAACAACAGCAACAGGCTCAGCAACAAGCACAACAA
CAATATCAAAGTATTCAACTCAATGGCGTAATTGCTCCCCCATCTTCAGT
TGGTGGCACAGTGGTTCAGCTAAATGATGGCCAGGTACGTAGAATTTAAT
GGATGAACATAATTCTGCTAGTGTAATACCGGACGTTGGTCTAATTCCGC
TCATCTTTAGATAAGAAGAAATAGAGATATGCATCTtactaaatttcaaa
ttttacttttcagGCTTACACAATAAAAGGTTCTCTTCCTGTTGGATTGG
AAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAGAAGAAGCAACTAGG
AAAAGAGAACTAAGGTTATACAAAAATAGGTAAATATTGCTTGATTTTTA
CAataattttcaccattttatcaAGAACAGTTTCTAAATCTGAAACTGAA
TTTCTTTAACAAATTTAGAAAGTTAGCAGAAAACACCAGATACCAAATTA
AGGCATCGCATTTGCAATTTGTGATGCATTTTATGGATTtcttacaagct
aaaaatttaTCTATTTCAGGATGAAAAAACTATGCTTGCTAAATTCAATG
CATGAAATACTGCTGTTAACCAAACAGCTGATTGATCTTGAATTTAAAGC
TCCAAATCAGCATTTTAGTCAGTATAACATTAACtaaatttatgattttg
ttcatttttaggGAAGCAGCCAGAGAATGCAGGCGGaagaaaaaagaata
tgtaaaATGTCTAGAAAATAGAGTTGCAGTACTAGAAAACCAAAATAAAG
CTCTAATAGAAGAACTAAAATCTCTAAAGGACTTATACTGTAGTAAAGGA
GATTAAGTTGGTGGTTTGTGTCATAATATAGAGCTGATGTTTGTAAATAG
ACGTATGTTTTAGAGTTTTTATGgtttaaatatcttttttcttAACTGAT
gactaaaaacaacaaaatgatatttttattaGCACTTTAGAAGGATATTA
TTTTTcatatgaatttaaaaaaagtgaaatcttATTTGTTAAGTGTACAA
AAATTTGGAGTGGAGTGGGTCAGCCTTACTTTCTTTGCATGAATCAATTG
CACACTAATTTACAATCAACGTAATTCCTTATCCTGGACAAGGAAATGAG
TGATTTAGCTgaattatattttcattttaattacTTTCTTATCTGTTTAG
CTCAACAGTTTGTTATCCTCAGAGCAAACTTTTTAAGATGACATCAAATA
TTATTTCGgccaatttttcatttattttcaaaacccATGTTGCAATTTTC
CTGATGTCATATTGACTGTTTGTTTTATGATTAAATCTGTTTACAAATTT
GTTCCCTAAACAAGATGATGTTTTCATCTAAATGGATTTctaaacgtcaa
ttgacgtcaAGTATCGTTAAAGTGGCTTAAGACCCTTCACTTAGATTTTG
TGCACGGTTAATAATAATGTATTATTTTTCagtttatatatattttttat
cgtCTCAATTTATCCACTTTTCgtgcttttctttctttttttttgtcatg
gGAATTTTGGAATTGTTTGTTAAGTCCTACCCAGTTCCatgttttatttg
tttcaatattCTGGTGTTTTTGCTTTGGTNGTCCTACCCAGTTCCatgtt
ttatttgtttcaatattCTGGTGTTTTTGCTTTGGTATGCattagttttt
ttatatatttgtttGTCTGTTTTTGAGCCTGTATTAATACTGTAAATATT
TTACATTATCTCGATAATATTAATAACTAGTCCTTTCCGTGACAAACTTA
TTATTGTACATACAATATACCTGTATCCTTACAaccaaaatacaaaatta
ttaCCAAATTAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006705XLOC_006705Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011947-exon-sc0000134-1491911889:267570..267773TCONS_00011947-exon-sc0000134-1491911889:267570..267773Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1510915933:267570..267773TCONS_00011947-exon-sc0000134-1510915933:267570..267773Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1575043694:267570..267773TCONS_00011947-exon-sc0000134-1575043694:267570..267773Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1491911889:268035..268242TCONS_00011947-exon-sc0000134-1491911889:268035..268242Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1510915933:268035..268242TCONS_00011947-exon-sc0000134-1510915933:268035..268242Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1575043694:268035..268242TCONS_00011947-exon-sc0000134-1575043694:268035..268242Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1491911889:268803..268818TCONS_00011947-exon-sc0000134-1491911889:268803..268818Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1510915933:268803..268818TCONS_00011947-exon-sc0000134-1510915933:268803..268818Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1575043694:268803..268818TCONS_00011947-exon-sc0000134-1575043694:268803..268818Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1491911889:270555..270803TCONS_00011947-exon-sc0000134-1491911889:270555..270803Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1510915933:270555..270803TCONS_00011947-exon-sc0000134-1510915933:270555..270803Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1575043694:270555..270803TCONS_00011947-exon-sc0000134-1575043694:270555..270803Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1491911889:270933..271048TCONS_00011947-exon-sc0000134-1491911889:270933..271048Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1510915933:270933..271048TCONS_00011947-exon-sc0000134-1510915933:270933..271048Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1575043694:270933..271048TCONS_00011947-exon-sc0000134-1575043694:270933..271048Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1491911889:271381..272534TCONS_00011947-exon-sc0000134-1491911889:271381..272534Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1510915933:271381..272534TCONS_00011947-exon-sc0000134-1510915933:271381..272534Clytia hemisphaericaexon
TCONS_00011947-exon-sc0000134-1575043694:271381..272534TCONS_00011947-exon-sc0000134-1575043694:271381..272534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:267570..272534 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.0988	11.4051	5.55176	4.18859	10.8974	9.45169	6.19983	5.12638	19.99	65.1176	15.6173	52.2731	54.5519	52.5129	40.7223	30.4779	36.0599	39.2083	45.2436	40.8457	19.8045	20.9529	22.2823	19.6498	30.9942	18.1308	85.7799	74.6164	44.6711	49.4483
Blast
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BLAST of TCONS_00011947 vs. Swiss-Prot (Human)
Match: CREB1 (Cyclic AMP-responsive element-binding protein 1 OS=Homo sapiens GN=CREB1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.308e-25
Identity = 102/226 (45.13%), Postives = 123/226 (54.42%), Query Frame = 3 
Query:  363 NNRQKSREILTRRPSYRKILDDLAADSP-----------------------VKMENYD-DNGSSDASSPGGPEEL----TDKXXXXXXXXXXXXXXXXXXXXXXXXYQSIQLNGVIAPPSSVGGTVVQLNDG--QAYTIKGS-----LPVGLESATLASPQQMAEEATRKRELRLYXXXXXXXXXXXXXXXYVKCLENRVAVLENQNKALIEELKSLKDLYCSKGD 935
             + QK REIL+RRPSYRKIL+DL++D+P                       V    Y   +G   A + GG  +L    TD  Q  Q          Q      Q  Q+     ++ P + V   VVQ   G  Q Y I+ +      P  + +++ A P Q AEEA RKRE+RL KNREAARECRRKKKEYVKCLENRVAVLENQNK LIEELK+LKDLYC K D
Sbjct:  119 TDSQKRREILSRRPSYRKILNDLSSDAPGVPRIEEEKSEEETSAPAITTVTVPTPIYQTSSGQYIAITQGGAIQLANNGTDGVQGLQTLTMTNAAATQPGTTILQYAQTTDGQQILVPSNQV---VVQAASGDVQTYQIRTAPTSTIAPGVVMASSPALPTQPAEEAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYCHKSD 341
The following BLAST results are available for this feature:
BLAST of TCONS_00011947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CREB11.308e-2545.13Cyclic AMP-responsive element-binding protein 1 OS... [more]
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