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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011875 ID=TCONS_00011875|Name=TCONS_00011875|organism=Clytia hemisphaerica|type=transcript|length=3964bp
ttatatagaaaATTATACTAACTTATCAAGTCAATATATCAGTGATAATA
GATCATAAAGAAAGTGGTTTACTACATTACTGGACACTAATGATAGAAAT
ATGGATGATCTGATTTCATTGATGTACAGGAAGATTGTGAGTTAAGTTTG
ACGAAGCTTTAAAGGGACAACATGTTTAACGTACGATTGCGAAAACTCCG
TTCGGCCCTGTGCACACTTGGTTTGGTGTTCGCCATTGTTTTGCTCTTTC
TCACCACGCAGATGAAATCGAATGGAAATTTAAGCTATTTTTACACATCA
ACAGTTTATCAtaATTCACGACACATTCATCGGGATTCATTCAACGTCAT
AAacgaaaatggtaaaaaaagaaACCGACTATTTCCCGAAGATTCAAAAA
CCGAAAACCACGATCGGGATGTCGTCGTCCTAGGACTCaagaagttgaaa
aataatcctACGACTACAGAATCCTATACAGAGgataaaaatgaatttga
atttggaTTTGAACGACCTTCCATCAGAGATCACGAGTTCAATTTCGGCG
TAAAACCGTTACATAGCGAAAAGCAACCGACAAAAGTCGTCGGTGAACGA
CAGTCAGGTCTAGAGGACGGATGGCCTACTATCGAGCCTCAGATTACAAA
ACACTTACCATCGACCAATAAACAATCATCAGAAGTTGCTGATATAAAAG
GATTACAAAAACCTACGAATAAAAACGCTTTAGAGCCCGACAATGAGACA
ACAGATCCGGCTGATGTTCGAAACGAAAACCAAGGAGTCAGCACCACCGA
CAATTTAGAGATTCACGATGCGACCGAAAAACGACGAAAACCGAGACACG
AGGTTGAAACGACAACGAATATACACGTTGAAACGACAGAAGATCGTTCT
CGTAACATGAATAACGAAACTGAAGATAATGAATTTGAAGAATCAGAAAA
TGCTAAAAGTGAAACAAAAACTGAAGAAGGGACAGACTCTCGAAATACTG
TCAAGAATACTTTAGATATGGACAAAGAGCTCGAAAAGCATCTCGGTTCG
AATGAAGTTGTAGGAAACTTAGACAAAGGATCTTTAAAAGATGTTGATGA
GAACACAGATTCGATTCGACATTTTATACCTGATAACAATGATGGTGAGA
TTCAAAAGAAAGCACAATTCAATTCAGATCCACCCAAATCTACACAGCAT
CGTTCAATAAAAACGAGAAAAACACCAACTGACAGTACACCAGAAAGATC
ACCAGGTGACAATATAGAAGAGGAAAGTTTGGGAGCAAAAATGACCAAAG
ATGGCAACAATGAAGATGAATCAAATAAATCTTTTCTAGTTACTAAGTTG
CACGAAACTAAAAGAAAATTGTCTAAAGCTCCACAGAACAGTTACCTATC
TCCTACCTTTTATCCATCCACCACACAAGAATCTGACAGCCCTAAAGATG
AGACATCTGAAAATCTAAATACAGATACATTGGAGACTCCGGACCAAAAC
TGCAAGCCAGCTGAAAGTGTTGTTTTTTTAAAAACCCATAAAACAGGATC
GAGTACCATATTGAATATATTTCAACGTTATGTAGATCGAAAACAACTTT
CTATGGTTTTGCCAAGGTTACCTGAAACCAATCATCGACTTGGCTGGCCG
TACAGTTTCTCAAGCGGTTGGGTTTTTGAACATAAGAAAAATCAGCGGTA
TAACATGTTAGCTAACCATGCACGTTATAACCGTAAAAAGATGTTAAGTG
TTATGAAAGAACCACAGAAAACTAAATTCGTGACTATTTTACGTGACCCG
NACATAAGAAAAATCAGCGGTATAACATGTTAGCTAACCATGCACGTTAT
AACCGTAAAAAGATGTTAAGTGTAATGAAAGAACCACAGAAAACTAAATT
CGTGACTATTTTACGTGACCCGTTACGTCAGCTTGAGTCAAGCGccgttt
attttcattttgagcgCATGTTTAAGATACCGAAAGAAAATTTAGTCgat
cattttttggaaaaagttgaaGAAGATAGAAATATGATTTGGAACATGAC
CCGCAAACCAAGAGGGAATATGTATTTGGTTAAAAATCCGAACGCTTTTG
ATTTAGGTTTTCCAACGTGGCTGGAAGATGAAGAGAAAGTTGACGCGATT
CTCGATACTGTAGAAAAAGATTACAATTTAGTAATGATCTCTGATTACAT
GATCGAATCATTAGTATTACTTAAAGACGAATTGTGTTGGAATTTAGAAG
ATATTGTCTATTTCACCCTTAATAAAAGACCTaagaaataccgacaaaaa
attCAAGACGATTCTATTCGACGTAATAAAGTACGGCGTTGGAATAATAT
CGACTATAAATTATTCGAACATTTTAATCAGACATTTTGGGAACGCGTTC
GAAAAGGTGGTGAACGTTTTCAGAAAGATGTTGAGAGATTAAAACTATTG
AATAAAGAATTAGAAGAGAAATGTATTGATCGTGGAacttattttgataa
atctcAACCGTGGTTTCCTATCCTTGGTTATAAGATACGCGATGAAGCAA
AGGGTACTGATTATTACAATTTGTGTCAACAAATGATCAAACCAGAGATT
GAATTTAATAATTTCTTACGACAAAAACAAAGCGAGCACGGGTGGACACC
ACCGCCAAAGAAAGCTCGCAAGCCGAAACCACCGCCGAAAAAGGTGGTCA
TTAAAAGCTAAGCATGTTGTTGTTTCTATTATTGTTGTTTTGTTATGATG
CATGAAATTCAtgacttaaagggacataacagtacttgcgaaatttgtaa
acatactgtatgcagcggatacaaaatcaaaacaaatgtcacatgtcaaa
ataaaagatcaaatcaaatatggctaattttgattgttcaattcttttgg
acacgtgattttaattgttctctttaatgacacgtggttcgcgcaatgtt
tacattttactactttaatgtccctttaaagtttTATACGAAAGTAGCCA
AAGTGCACCGTGCgttgggagtttctaaacatcgatcAGAAATGGTGACC
ACGACCGGTAAGAACTCAATAGCcaaaatttatctggtcgccagtcgtgg
tcgctggtcttggtcgtcatttctggttGATGTTTAAAAACTTCCCGGGC
GTTTGGCActaattttattgtttatttctaAATTAGTGGCAAAGCGCCCG
GTCTTTTTTAAAGTGCTCCTATATAGGACACTACGTCATAAATATGATGA
ATACCGTTCGAGTTTGAGGCttgtgtttttatatttatgtaTGCATGAAG
CAGTTACGGTTAGacaaacacccccttctcacagacccggtaggttTGTT
tcagccaatggggatagaaaataacggactgaaactggatggggattgat
attatcaaaatttttatgaatcggatttcaattctttttttaagtATAGT
CAATAGATGGGGATGAGAAAAATAGTTaatatattttgcagtgagaattg
ctttatttgattattttcagcaggggcaaaaattgaaggaaaattttcca
ccgggacaatattttggctaatttttccagtgggaagggttcccggTGGT
tatgtgagaagggggtgtaacacagatttataaagctcgaagggctagat
gtcgtgttttggctgaaaagttTGCCgtagttaggtaggaaatcctacct
aggtcatgTGACATTTCAAAAGAGTTTCAGCGCGCTTGACCAAGCAGAAG
CTTTGCGGGTTTTCAATAAagatagcagcaatatttttggtGATATTCGC
TTTTTTTGCACGACACcaagcccttcgggctttataaatctgtgggtTGT
ATTCAAAGTGTCAGAAAAAGGGGAACTGAATCATGCCTGGAAGATTGTTT
TGGAAGGACCAAGAggttttataatttcaatttcaattcaagaATATTTG
AAATAAGAATGCGG Run BLAST on NCBI protein sequence of TCONS_00011875-protein >TCONS_00011875-protein ID=TCONS_00011875-protein|Name=TCONS_00011875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=553bp
MFNVRLRKLRSALCTLGLVFAIVLLFLTTQMKSNGNLSYFYTSTVYHNSR
HIHRDSFNVINENGKKRNRLFPEDSKTENHDRDVVVLGLKKLKNNPTTTE
SYTEDKNEFEFGFERPSIRDHEFNFGVKPLHSEKQPTKVVGERQSGLEDG
WPTIEPQITKHLPSTNKQSSEVADIKGLQKPTNKNALEPDNETTDPADVR
NENQGVSTTDNLEIHDATEKRRKPRHEVETTTNIHVETTEDRSRNMNNET
EDNEFEESENAKSETKTEEGTDSRNTVKNTLDMDKELEKHLGSNEVVGNL
DKGSLKDVDENTDSIRHFIPDNNDGEIQKKAQFNSDPPKSTQHRSIKTRK
TPTDSTPERSPGDNIEEESLGAKMTKDGNNEDESNKSFLVTKLHETKRKL
SKAPQNSYLSPTFYPSTTQESDSPKDETSENLNTDTLETPDQNCKPAESV
VFLKTHKTGSSTILNIFQRYVDRKQLSMVLPRLPETNHRLGWPYSFSSGW
VFEHKKNQRYNMLANHARYNRKKMLSVMKEPQKTKFVTILRDPXIRKISG
ITC Run BLAST on NCBI transcript from alignment at sc0000133:350393..355271- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011875 ID=TCONS_00011875|Name=TCONS_00011875|organism=Clytia hemisphaerica|type=transcript|length=4879bp|location=Sequence derived from alignment at sc0000133:350393..355271- (Clytia hemisphaerica)
TTATATAGAAAATTATACTAACTTATCAAGTCAATATATCAGTGATAATA
GATCATAAAGAAAGTGGTTTACTACATTACTGGACACTAATGATAGAAAT
ATGGATGATCTGATTTCATTGATGTACAGGAAGATTGTGAGTTAAGTTTG
ACGAAGCTTTAAAGGGACAACATGTTTAACGTACGATTGCGAAAACTCCG
TTCGGCCCTGTGCACACTTGGTTTGGTGTTCGCCATTGTTTTGCTCTTTC
TCACCACGCAGATGAAATCGAATGGAAATTTAAGCTATTTTTACACATCA
ACAGTTTATCAGTAAGTAATAATTTGTTGGATTTTCTCTTACTTTGCTCT
AGATGGATATAGATGTTCATTGCCGAAGCACTTGTGTATTTTGGTATAAG
TTTTCATTAAAGTCTTGAAAACTCATAAACCTTAGCATGAGAAAAACCTT
AACTTTTGTCAGTGTTTTTGTAAAAAGAGCTTCATCGCACAGAGGTTTAT
TTTTTCAACAATTCAACAATTTTTTACTTTCTTTTAACGTGTTTGTTTTA
TCATGTCGCGTGTATTGACAAAAAGGTCATTTGGAAAAAGGAAGTCAAAT
AAATCGTTAGAAAAAACCACAGGACACTCAGAACACACATATTAAAAATA
GCAAAATAAAGCTAACTCAGGCTTGACAAGTCTATCTTTACTTAATACAT
GTCTACATGTTGAATCCCCTCCGGCAGCACGCACGCACAGAACGTCCAGA
TCACGTTTCTTTAATGTTCATAACGTCCTTGTAAGCGTTAGGTGTACGTT
AAAACAGCGCTACACTTTTTTTATAAGAACCAGTAAATTGCAGTCTGGAT
TTTTTTTGAGGCTCGGCTGTTCTAATTTTTTTGGCACTTTCAAAGTCACA
GATTGTTCTTATCCTGTTCTTAGTTATAGGGTGTAATTGAGGTATTTTAG
GCGTTATAACCAATTTTTACTATTCTGGCTCAGTAATTTCAGGCTCATGT
TCTGAAAATATTCTTATTTTTTGGCGATTTTGAGCCTCATTGTTCTTATA
AAAGGAAAAAGTGTATCTCAATTCAACAGATATTTTCAAAAAGTTCCCCT
TAATAAATTTACTGTATTATTGGGATGGATTCAGCAAAAACCCAAAAGCA
ACGAGTTCCCAAACTGTGAGGTGTTCGCTACAAATTATGCTTAGCTAAAC
TCATTAATATTTTCATTTTTCTTCAGTAATTCACGACACATTCATCGGGA
TTCATTCAACGTCATAAACGAAAATGGTAAAAAAAGAAACCGACTATTTC
CCGAAGATTCAAAAACCGAAAACCACGATCGGGATGTCGTCGTCCTAGGA
CTCAAGAAGTTGAAAAATAATCCTACGACTACAGAATCCTATACAGAGGA
TAAAAATGAATTTGAATTTGGATTTGAACGACCTTCCATCAGAGATCACG
AGTTCAATTTCGGCGTAAAACCGTTACATAGCGAAAAGCAACCGACAAAA
GTCGTCGGTGAACGACAGTCAGGTCTAGAGGACGGATGGCCTACTATCGA
GCCTCAGATTACAAAACACTTACCATCGACCAATAAACAATCATCAGAAG
TTGCTGATATAAAAGGATTACAAAAACCTACGAATAAAAACGCTTTAGAG
CCCGACAATGAGACAACAGATCCGGCTGATGTTCGAAACGAAAACCAAGG
AGTCAGCACCACCGACAATTTAGAGATTCACGATGCGACCGAAAAACGAC
GAAAACCGAGACACGAGGTTGAAACGACAACGAATATACACGTTGAAACG
ACAGAAGATCGTTCTCGTAACATGAATAACGAAACTGAAGATAATGAATT
TGAAGAATCAGAAAATGCTAAAAGTGAAACAAAAACTGAAGAAGGGACAG
ACTCTCGAAATACTGTCAAGAATACTTTAGATATGGACAAAGAGCTCGAA
AAGCATCTCGGTTCGAATGAAGTTGTAGGAAACTTAGACAAAGGATCTTT
AAAAGATGTTGATGAGAACACAGATTCGATTCGACATTTTATACCTGATA
ACAATGATGGTGAGATTCAAAAGAAAGCACAATTCAATTCAGATCCACCC
AAATCTACACAGCATCGTTCAATAAAAACGAGAAAAACACCAACTGACAG
TACACCAGAAAGATCACCAGGTGACAATATAGAAGAGGAAAGTTTGGGAG
CAAAAATGACCAAAGATGGCAACAATGAAGATGAATCAAATAAATCTTTT
CTAGTTACTAAGTTGCACGAAACTAAAAGAAAATTGTCTAAAGCTCCACA
GAACAGTTACCTATCTCCTACCTTTTATCCATCCACCACACAAGAATCTG
ACAGCCCTAAAGATGAGACATCTGAAAATCTAAATACAGATACATTGGAG
ACTCCGGACCAAAACTGCAAGCCAGCTGAAAGTGTTGTTTTTTTAAAAAC
CCATAAAACAGGATCGAGTACCATATTGAATATATTTCAACGTTATGTAG
ATCGAAAACAACTTTCTATGGTTTTGCCAAGGTTACCTGAAACCAATCAT
CGACTTGGCTGGCCGTACAGTTTCTCAAGCGGTTGGGTTTTTGAACATAA
GAAAAATCAGCGGTATAACATGTTAGCTAACCATGCACGTTATAACCGTA
AAAAGATGTTAAGTGTTATGAAAGAACCACAGAAAACTAAATTCGTGACT
ATTTTACGTGACCCGNACATAAGAAAAATCAGCGGTATAACATGTTAGCT
AACCATGCACGTTATAACCGTAAAAAGATGTTAAGTGTAATGAAAGAACC
ACAGAAAACTAAATTCGTGACTATTTTACGTGACCCGTTACGTCAGCTTG
AGTCAAGCGCCGTTTATTTTCATTTTGAGCGCATGTTTAAGATACCGAAA
GAAAATTTAGTCGATCATTTTTTGGAAAAAGTTGAAGAAGATAGAAATAT
GATTTGGAACATGACCCGCAAACCAAGAGGGAATATGTATTTGGTTAAAA
ATCCGAACGCTTTTGATTTAGGTTTTCCAACGTGGCTGGAAGATGAAGAG
AAAGTTGACGCGATTCTCGATACTGTAGAAAAAGATTACAATTTAGTAAT
GATCTCTGATTACATGATCGAATCATTAGTATTACTTAAAGACGAATTGT
GTTGGAATTTAGAAGATATTGTCTATTTCACCCTTAATAAAAGACCTAAG
AAATACCGACAAAAAATTCAAGACGATTCTATTCGACGTAATAAAGTACG
GCGTTGGAATAATATCGACTATAAATTATTCGAACATTTTAATCAGACAT
TTTGGGAACGCGTTCGAAAAGGTGGTGAACGTTTTCAGAAAGATGTTGAG
AGATTAAAACTATTGAATAAAGAATTAGAAGAGAAATGTATTGATCGTGG
AACTTATTTTGATAAATCTCAACCGTGGTTTCCTATCCTTGGTTATAAGA
TACGCGATGAAGCAAAGGGTACTGATTATTACAATTTGTGTCAACAAATG
ATCAAACCAGAGATTGAATTTAATAATTTCTTACGACAAAAACAAAGCGA
GCACGGGTGGACACCACCGCCAAAGAAAGCTCGCAAGCCGAAACCACCGC
CGAAAAAGGTGGTCATTAAAAGCTAAGCATGTTGTTGTTTCTATTATTGT
TGTTTTGTTATGATGCATGAAATTCATGACTTAAAGGGACATAACAGTAC
TTGCGAAATTTGTAAACATACTGTATGCAGCGGATACAAAATCAAAACAA
ATGTCACATGTCAAAATAAAAGATCAAATCAAATATGGCTAATTTTGATT
GTTCAATTCTTTTGGACACGTGATTTTAATTGTTCTCTTTAATGACACGT
GGTTCGCGCAATGTTTACATTTTACTACTTTAATGTCCCTTTAAAGTTTT
ATACGAAAGTAGCCAAAGTGCACCGTGCGTTGGGAGTTTCTAAACATCGA
TCAGAAATGGTGACCACGACCGGTAAGAACTCAATAGCCAAAATTTATCT
GGTCGCCAGTCGTGGTCGCTGGTCTTGGTCGTCATTTCTGGTTGATGTTT
AAAAACTTCCCGGGCGTTTGGCACTAATTTTATTGTTTATTTCTAAATTA
GTGGCAAAGCGCCCGGTCTTTTTTAAAGTGCTCCTATATAGGACACTACG
TCATAAATATGATGAATACCGTTCGAGTTTGAGGCTTGTGTTTTTATATT
TATGTATGCATGAAGCAGTTACGGTTAGACAAACACCCCCTTCTCACAGA
CCCGGTAGGTTTGTTTCAGCCAATGGGGATAGAAAATAACGGACTGAAAC
TGGATGGGGATTGATATTATCAAAATTTTTATGAATCGGATTTCAATTCT
TTTTTTAAGTATAGTCAATAGATGGGGATGAGAAAAATAGTTAATATATT
TTGCAGTGAGAATTGCTTTATTTGATTATTTTCAGCAGGGGCAAAAATTG
AAGGAAAATTTTCCACCGGGACAATATTTTGGCTAATTTTTCCAGTGGGA
AGGGTTCCCGGTGGTTATGTGAGAAGGGGGTGTAACACAGATTTATAAAG
CTCGAAGGGCTAGATGTCGTGTTTTGGCTGAAAAGTTTGCCGTAGTTAGG
TAGGAAATCCTACCTAGGTCATGTGACATTTCAAAAGAGTTTCAGCGCGC
TTGACCAAGCAGAAGCTTTGCGGGTTTTCAATAAAGATAGCAGCAATATT
TTTGGTGATATTCGCTTTTTTTGCACGACACCAAGCCCTTCGGGCTTTAT
AAATCTGTGGGTTGTATTCAAAGTGTCAGAAAAAGGGGAACTGAATCATG
CCTGGAAGATTGTTTTGGAAGGACCAAGAGGTTTTATAATTTCAATTTCA
ATTCAAGAATATTTGAAATAAGAATGCGG Coding sequence (CDS) from alignment at sc0000133:350393..355271- >TCONS_00011875 ID=TCONS_00011875|Name=TCONS_00011875|organism=Clytia hemisphaerica|type=CDS|length=3324bp|location=Sequence derived from alignment at sc0000133:350393..355271- (Clytia hemisphaerica)
TAATTCACGACACATTCATCGGGATTCATTCAACGTCATAAACGAAAATG
GTAAAAAAAGAAACCGACTATTTCCCGAAGATTCAAAAACCGAAAACCAC
GATCGGGATGTCGTCGTCCTAGGACTCAAGAAGTTGAAAAATAATCCTAC
GACTACAGAATCCTATACAGAGGATAAAAATGAATTTGAATTTGGATTTG
AACGACCTTCCATCAGAGATCACGAGTTCAATTTCGGCGTAAAACCGTTA
CATAGCGAAAAGCAACCGACAAAAGTCGTCGGTGAACGACAGTCAGGTCT
AGAGGACGGATGGCCTACTATCGAGCCTCAGATTACAAAACACTTACCAT
CGACCAATAAACAATCATCAGAAGTTGCTGATATAAAAGGATTACAAAAA
CCTACGAATAAAAACGCTTTAGAGCCCGACAATGAGACAACAGATCCGGC
TGATGTTCGAAACGAAAACCAAGGAGTCAGCACCACCGACAATTTAGAGA
TTCACGATGCGACCGAAAAACGACGAAAACCGAGACACGAGGTTGAAACG
ACAACGAATATACACGTTGAAACGACAGAAGATCGTTCTCGTAACATGAA
TAACGAAACTGAAGATAATGAATTTGAAGAATCAGAAAATGCTAAAAGTG
AAACAAAAACTGAAGAAGGGACAGACTCTCGAAATACTGTCAAGAATACT
TTAGATATGGACAAAGAGCTCGAAAAGCATCTCGGTTCGAATGAAGTTGT
AGGAAACTTAGACAAAGGATCTTTAAAAGATGTTGATGAGAACACAGATT
CGATTCGACATTTTATACCTGATAACAATGATGGTGAGATTCAAAAGAAA
GCACAATTCAATTCAGATCCACCCAAATCTACACAGCATCGTTCAATAAA
AACGAGAAAAACACCAACTGACAGTACACCAGAAAGATCACCAGGTGACA
ATATAGAAGAGGAAAGTTTGGGAGCAAAAATGACCAAAGATGGCAACAAT
GAAGATGAATCAAATAAATCTTTTCTAGTTACTAAGTTGCACGAAACTAA
AAGAAAATTGTCTAAAGCTCCACAGAACAGTTACCTATCTCCTACCTTTT
ATCCATCCACCACACAAGAATCTGACAGCCCTAAAGATGAGACATCTGAA
AATCTAAATACAGATACATTGGAGACTCCGGACCAAAACTGCAAGCCAGC
TGAAAGTGTTGTTTTTTTAAAAACCCATAAAACAGGATCGAGTACCATAT
TGAATATATTTCAACGTTATGTAGATCGAAAACAACTTTCTATGGTTTTG
CCAAGGTTACCTGAAACCAATCATCGACTTGGCTGGCCGTACAGTTTCTC
AAGCGGTTGGGTTTTTGAACATAAGAAAAATCAGCGGTATAACATGTTAG
CTAACCATGCACGTTATAACCGTAAAAAGATGTTAAGTGTTATGAAAGAA
CCACAGAAAACTAAATTCGTGACTATTTTACGTGACCCGNACATAAGAAA
AATCAGCGGTATAACATGTTAGATGTTTAACGTACGATTGCGAAAACTCC
GTTCGGCCCTGTGCACACTTGGTTTGGTGTTCGCCATTGTTTTGCTCTTT
CTCACCACGCAGATGAAATCGAATGGAAATTTAAGCTATTTTTACACATC
AACAGTTTATCATAATTCACGACACATTCATCGGGATTCATTCAACGTCA
TAAACGAAAATGGTAAAAAAAGAAACCGACTATTTCCCGAAGATTCAAAA
ACCGAAAACCACGATCGGGATGTCGTCGTCCTAGGACTCAAGAAGTTGAA
AAATAATCCTACGACTACAGAATCCTATACAGAGGATAAAAATGAATTTG
AATTTGGATTTGAACGACCTTCCATCAGAGATCACGAGTTCAATTTCGGC
GTAAAACCGTTACATAGCGAAAAGCAACCGACAAAAGTCGTCGGTGAACG
ACAGTCAGGTCTAGAGGACGGATGGCCTACTATCGAGCCTCAGATTACAA
AACACTTACCATCGACCAATAAACAATCATCAGAAGTTGCTGATATAAAA
GGATTACAAAAACCTACGAATAAAAACGCTTTAGAGCCCGACAATGAGAC
AACAGATCCGGCTGATGTTCGAAACGAAAACCAAGGAGTCAGCACCACCG
ACAATTTAGAGATTCACGATGCGACCGAAAAACGACGAAAACCGAGACAC
GAGGTTGAAACGACAACGAATATACACGTTGAAACGACAGAAGATCGTTC
TCGTAACATGAATAACGAAACTGAAGATAATGAATTTGAAGAATCAGAAA
ATGCTAAAAGTGAAACAAAAACTGAAGAAGGGACAGACTCTCGAAATACT
GTCAAGAATACTTTAGATATGGACAAAGAGCTCGAAAAGCATCTCGGTTC
GAATGAAGTTGTAGGAAACTTAGACAAAGGATCTTTAAAAGATGTTGATG
AGAACACAGATTCGATTCGACATTTTATACCTGATAACAATGATGGTGAG
ATTCAAAAGAAAGCACAATTCAATTCAGATCCACCCAAATCTACACAGCA
TCGTTCAATAAAAACGAGAAAAACACCAACTGACAGTACACCAGAAAGAT
CACCAGGTGACAATATAGAAGAGGAAAGTTTGGGAGCAAAAATGACCAAA
GATGGCAACAATGAAGATGAATCAAATAAATCTTTTCTAGTTACTAAGTT
GCACGAAACTAAAAGAAAATTGTCTAAAGCTCCACAGAACAGTTACCTAT
CTCCTACCTTTTATCCATCCACCACACAAGAATCTGACAGCCCTAAAGAT
GAGACATCTGAAAATCTAAATACAGATACATTGGAGACTCCGGACCAAAA
CTGCAAGCCAGCTGAAAGTGTTGTTTTTTTAAAAACCCATAAAACAGGAT
CGAGTACCATATTGAATATATTTCAACGTTATGTAGATCGAAAACAACTT
TCTATGGTTTTGCCAAGGTTACCTGAAACCAATCATCGACTTGGCTGGCC
GTACAGTTTCTCAAGCGGTTGGGTTTTTGAACATAAGAAAAATCAGCGGT
ATAACATGTTAGCTAACCATGCACGTTATAACCGTAAAAAGATGTTAAGT
GTTATGAAAGAACCACAGAAAACTAAATTCGTGACTATTTTACGTGACCC
GNACATAAGAAAAATCAGCGGTATAACATGTTAGATGTTTAACGTACGAT
TGCGAAAACTCCGTTCGGCCCTGTGCACACTTGGTTTGGTGTTCGCCATT
GTTTTGCTCTTTCTCACCACGCAGATGAAATCGAATGGAAATTTAAGCTA
TTTTTACACATCAACAGTTTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011875-exon-sc0000133-1575043694:354961..355271 | TCONS_00011875-exon-sc0000133-1575043694:354961..355271 | Clytia hemisphaerica | exon |
| TCONS_00011875-exon-sc0000133-1575043694:350393..354045 | TCONS_00011875-exon-sc0000133-1575043694:350393..354045 | Clytia hemisphaerica | exon |
| TCONS_00011875-exon-sc0000133-1510915933:354961..355271 | TCONS_00011875-exon-sc0000133-1510915933:354961..355271 | Clytia hemisphaerica | exon |
| TCONS_00011875-exon-sc0000133-1510915933:350393..354045 | TCONS_00011875-exon-sc0000133-1510915933:350393..354045 | Clytia hemisphaerica | exon |
| TCONS_00011875-exon-sc0000133-1491911889:354961..355271 | TCONS_00011875-exon-sc0000133-1491911889:354961..355271 | Clytia hemisphaerica | exon |
| TCONS_00011875-exon-sc0000133-1491911889:350393..354045 | TCONS_00011875-exon-sc0000133-1491911889:350393..354045 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:350393..355271 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009729 | Gal-3-0_sulfotransfrase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009247 | glycolipid biosynthetic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005794 | Golgi apparatus |
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0001733 | galactosylceramide sulfotransferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0009247 |
glycolipid biosynthetic process |
| cellular_component |
GO:0005794 |
Golgi apparatus |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0001733 |
galactosylceramide sulfotransferase activity |
Blast
BLAST of TCONS_00011875 vs. Swiss-Prot (Human)
Match: G3ST1 (Galactosylceramide sulfotransferase OS=Homo sapiens GN=GAL3ST1 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.491e-32 Identity = 93/285 (32.63%), Postives = 150/285 (52.63%), Query Frame = 3
Query: 1803 HKKNQRYNMLANHARYNRKKMLSVMKEPQKTKFVTILRDPLRQLESSAVYFH--FERMFKIPKENLVDHFLEKVEEDRNMIWNMTRKPRG-NMYLVKNPNAFDLGFPTWLE-DEEKVDAILDTVEKDYNLVMISDYMIESLVLLKDELCWNLEDIVYFTLNKRPKKYRQKIQDDSIRRNKVRRWNNIDYKLFEHFNQTFWERVRK-GGERFQKDVXXXXXXXXXXXXXCIDRGTYFDKS-------QPWFP-----ILGYKIRDEAKGTDYYNLCQQMIKPEIEF 2606
++ +N++ NH R++ ++ ++ P F+T+LRDP R ESS YF +K+ + + FL+ + DR P G N + ++N FDLG+ L+ +V + VE+ ++LV++ +Y ESLVLLKD LCW LED++YF LN R ++ + R WN +D L+ HFN +FW +V G ER ++V L+ N+ + CID G D + QPW P ILGY ++ ++ G + LC++M+ PEI++
Sbjct: 129 YRPGACFNIICNHMRFHYDEVRGLV--PTNAIFITVLRDPARLFESSFHYFGPVVPLTWKLSAGDKLTEFLQ--DPDRYY------DPNGFNAHYLRNLLFFDLGYDNSLDPSSPQVQEHILEVERRFHLVLLQEYFDESLVLLKDLLCWELEDVLYFKLNARRDSPVPRLSGELYGRATA--WNMLDSHLYRHFNASFWRKVEAFGRERMAREVAALRHANERMRTICIDGGHAVDAAAIQDEAMQPWQPLGTKSILGYNLK-KSIGQRHAQLCRRMLTPEIQY 400
The following BLAST results are available for this feature:
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