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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011790 ID=TCONS_00011790|Name=TCONS_00011790|organism=Clytia hemisphaerica|type=transcript|length=1551bp
CGTCTCGTGTGGAATGACAACAATTTGGCTTGTGTCAAGCATTTTGCATA
TTTCGTTGATAGCTCCCCTTTCTCTCTTTCATCTCTCTCATTGGAGGAGG
ctgtcaaaatcaaatcattagTAGAAGTTGTAAAGCGCACCTGTTGCTAG
TGTACTGAACGTTTGAGTCGTGAATCAAAGACGTCTTTTCACTTCACTGT
ATACACCGAACGTTTTTCGTATAAAGAGAAAGTTTATAGACTCTCATTGT
TTAGTGGCTATATTGTTTGGTTTTCCCATGTGTTTTTTTGATTGAGTGAA
TCGCTCGTTTTGTATTTCCCCCATACGTTTTGTGTGTGCAAGAGTGGaga
ttcatttttcttttgatatggTGGTTTGAGAGAGAAACGCAAGGTTGATT
TTTgtggaaaagaatttttgaattttatttgttGGTTGGTTGGACAAAAT
GCCACGATCGTTCTTGGTGAAGAGTAACCTGAAAACAGAGCAACATTTCC
ACGCGAGATCGTTGTACGAACAGAAAAACAGATTAGATGATTCAGaTCAC
TTTCAACATGTCCAGACGTTCGAACCACGTGCTCACCACTCACCTGATGA
TATTCTCTACCAAGGCAAACGCTCTCCAACCTACGTCGAAATCAACGACT
ATTGGCATCATGGAAAATTCCCGTTCTACGGAAAACACATCTCACGGTTT
TATACTCCACCGGAGAAAGATATAAACTTCAACACGATAAGCCCACCTTT
GGAGAAACCGCTTATCAAAGAAGAGACGAGACCTGCTCATGTAGAGAGCC
ATTTGTATGAGAGGAAACTAGTCGAACGTCACACAAACGAAATTGTAGTC
GTTCATCCATCAGATCATCATATACAGCATCACCCTACTGTAGACTTAAA
AGTCAACTCGGAATTGGAGGACAAAAAATCTCCACCACGCCAACAGACCG
TTAGCAAAACAGATAAAAACAGTAAAAGTCCACGTCGGTTTTCTTGCAAA
TACTGTGAAAAAGACTACATGAGCCTTGGTGCTCTTAAAATGCACATACG
AACACACACTTTACCTTGTAAATGCAACATTTGTGGCAAGGCTTTCAGCA
GACCGTGGCTTCTGCAAGGACATATTCGAACGCATACGGGTGAGCGGCCG
TTCGGATGTTCATATTGTGGTCGCGCGTTCGCCGATCGCTCGAATTTACG
GGCGCACATTCAAACACATACTCAAGTTAAAAAGTACGAATGCCGCTTCT
GTTCAAAGACTTTTTCGCGAGCCTCACTTCTGAAGAAACACGAGGCTAAT
GATTGTCTAGCAAATATTGGTAGACCAGAAACCTGACTCTCTTTCTCTCC
TCACccattttttatatatatgTTGATAATATACGCAAATGACTTTTTAT
AATAAAGTAGTCAAAGGAATAGTTTTAAAAAGGTTGTACAtgtattatat
tttttgcaGATATTTTAGTCATAGTTTATAATATTTCattggaaaaacat
ttttatataccTTAGCATTTTTAGAAGGTAAAAAAGATACTTTTAAGGTC
A Run BLAST on NCBI transcript from alignment at sc0000132:307962..310056- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011790 ID=TCONS_00011790|Name=TCONS_00011790|organism=Clytia hemisphaerica|type=transcript|length=2095bp|location=Sequence derived from alignment at sc0000132:307962..310056- (Clytia hemisphaerica)
CGTCTCGTGTGGAATGACAACAATTTGGCTTGTGTCAAGCATTTTGCATA
TTTCGTTGATAGCTCCCCTTTCTCTCTTTCATCTCTCTCATTGGAGGAGG
CTGTCAAAATCAAATCATTAGTAGAAGTTGTAAAGCGCACCTGTTGCTAG
TGTACTGAACGTTTGAGTCGTGAATCAAAGACGTCTTTTCACTTCACTGT
ATACACCGAACGTTTTTCGTATAAAGAGAAAGTTTATAGACTCTCATTGT
TTAGTGGCTATATTGTTTGGTTTTCCCATGTGTTTTTTTGATTGAGTGAA
TCGCTCGTTTTGTATTTCCCCCATACGTTTTGTGTGTGCAAGAGTGGAGA
TTCATTTTTCTTTTGATATGGTGGTTTGAGAGAGAAACGCAAGGTTGATT
TTTGTGGAAAAGAATTTTTGAATTTTATTTGTTGGTTGGTTGGACAAAAT
GCCACGATCGTTCTTGGTGAAGAGTAACCTGAAAACAGAGCAACATTTCC
ACGCGAGATCGTTGTACGAACAGAAAAACAGATTAGATGATTCAGGTAAC
TTTTTTTTCTGTTTCTCATTTGTCTCTTCTTNAAATCGCTCATTTTGTAT
TTCCCCCATACGTTTTGTGTGTGCAAGAGTGGAGATTCATTTTTCTTTTG
ATATGGTGGTTTGAGAGAGAAACGCAAGGTTGATTTTTGTGGAAAAGAAT
TTTTGAATTTTATTTGTTGGTTGATTGGACAAAATGCCACGATCGTTCTT
GGTGAAGAGTAACCTGAAAACAGAGCAACATTTCCACGCGAGATCATTGT
ACGAACAGAAAAACAGATTAGATGATTCAGGTAACTTTTTTTTCTGTTTC
TCATTTGTCTCTTCTTTTATTAATTTTTAATATTTTTTTATTTTTGTGAA
TGATACTGTGCTCTATCTCTGAGAAACTTTTCTTTATAACATTATTAGCA
AATCACAAAACGAATCGACCTAATTTATTACAAATTTTTCTGATTTTCAA
CTTCAATAATTTATATTTTATATTTCTTCTTTGAGAGTTCTGCTTCACTT
TGCGTTCGCTTTTTATGATTTCTGTTTTTGTTTCTTTAGATCACTTTCAA
CATGTCCAGACGTTCGAACCACGTGCTCACCACTCACCTGATGATATTCT
CTACCAAGGCAAACGCTCTCCAACCTACGTCGAAATCAACGACTATTGGC
ATCATGGAAAATTCCCGTTCTACGGAAAACACATCTCACGGTTTTATACT
CCACCGGAGAAAGATATAAACTTCAACACGATAAGCCCACCTTTGGAGAA
ACCGCTTATCAAAGAAGAGACGAGACCTGCTCATGTAGAGAGCCATTTGT
ATGAGAGGAAACTAGTCGAACGTCACACAAACGAAATTGTAGTCGTTCAT
CCATCAGATCATCATATACAGCATCACCCTACTGTAGACTTAAAAGTCAA
CTCGGAATTGGAGGACAAAAAATCTCCACCACGCCAACAGACCGTTAGCA
AAACAGATAAAAACAGTAAAAGTCCACGTCGGTTTTCTTGCAAATACTGT
GAAAAAGACTACATGAGCCTTGGTGCTCTTAAAATGCACATACGAACACA
CACTTTACCTTGTAAATGCAACATTTGTGGCAAGGCTTTCAGCAGACCGT
GGCTTCTGCAAGGACATATTCGAACGCATACGGGTGAGCGGCCGTTCGGA
TGTTCATATTGTGGTCGCGCGTTCGCCGATCGCTCGAATTTACGGGCGCA
CATTCAAACACATACTCAAGTTAAAAAGTACGAATGCCGCTTCTGTTCAA
AGACTTTTTCGCGAGCCTCACTTCTGAAGAAACACGAGGCTAATGATTGT
CTAGCAAATATTGGTAGACCAGAAACCTGACTCTCTTTCTCTCCTCACCC
ATTTTTTATATATATGTTGATAATATACGCAAATGACTTTTTATAATAAA
GTAGTCAAAGGAATAGTTTTAAAAAGGTTGTACATGTATTATATTTTTTG
CAGATATTTTAGTCATAGTTTATAATATTTCATTGGAAAAACATTTTTAT
ATACCTTAGCATTTTTAGAAGGTAAAAAAGATACTTTTAAGGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011790-exon-sc0000132-1575043694:309512..310056 | TCONS_00011790-exon-sc0000132-1575043694:309512..310056 | Clytia hemisphaerica | exon |
| TCONS_00011790-exon-sc0000132-1575043694:307962..308967 | TCONS_00011790-exon-sc0000132-1575043694:307962..308967 | Clytia hemisphaerica | exon |
| TCONS_00011790-exon-sc0000132-1510915933:309512..310056 | TCONS_00011790-exon-sc0000132-1510915933:309512..310056 | Clytia hemisphaerica | exon |
| TCONS_00011790-exon-sc0000132-1510915933:307962..308967 | TCONS_00011790-exon-sc0000132-1510915933:307962..308967 | Clytia hemisphaerica | exon |
| TCONS_00011790-exon-sc0000132-1491911889:309512..310056 | TCONS_00011790-exon-sc0000132-1491911889:309512..310056 | Clytia hemisphaerica | exon |
| TCONS_00011790-exon-sc0000132-1491911889:307962..308967 | TCONS_00011790-exon-sc0000132-1491911889:307962..308967 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:307962..310056 - |
Blast
BLAST of TCONS_00011790 vs. Swiss-Prot (Human)
Match: SNAI2 (Zinc finger protein SNAI2 OS=Homo sapiens GN=SNAI2 PE=1 SV=1) HSP 1 Score: 191.815 bits (486), Expect = 3.614e-56 Identity = 86/113 (76.11%), Postives = 100/113 (88.50%), Query Frame = 2
Query: 968 NSKSPRRFSCKYCEKDYMSLGALKMHIRTHTLPCKCNICGKAFSRPWLLQGHIRTHTGERPFGCSYCGRAFADRSNLRAHIQTHTQVKKYECRFCSKTFSRASLLKKHEANDC 1306
+++S + FSCKYC+K+Y+SLGALKMHIRTHTLPC C ICGKAFSRPWLLQGHIRTHTGE+PF C +C RAFADRSNLRAH+QTH+ VKKY+C+ CSKTFSR SLL KHE + C
Sbjct: 152 DAQSRKSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGC 264
The following BLAST results are available for this feature:
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