|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001020 ID=TCONS_00001020|Name=TCONS_00001020|organism=Clytia hemisphaerica|type=transcript|length=2579bp
AAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCTTGAGA
TAAATCATTGACTGTGACTGATACAACACAATACACATATACACCAATCA
ATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATCATGGG
CCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAAATATG
AAAGGGAAAAGCGTCAATATGAGAGGGAACAGGCATACAAGTCTGGTGCA
TTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCGTCCAT
TCATCCTACTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATG
ATACTGATGCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTCCTGCA
CCGGAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTACTCAGA
AGATGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCACAACTG
TGGTATTAGTTAGTGCTTCAAGTAGTGAAGCTGGCGAACCAGTAGATGAC
ATTGATGAAGTACCAAAAGAGAAACCTGTATTACCACTCACACCTGAATT
ACTGGCTGAACGAGAAGAATCTTCTGATGTTTCCCCAGCTGCTGATATGG
AGGATCGCCCACCTGCATATGATTGCCTAGTTCAAAACACAGAAGATACA
CCACCTCAATCACCACACTATGTTAATCTTCAAACTCTATCTTCTCAAAA
AGAACTTGATGATATTCCAATTGAAACTGAACCGGTTTCAGATACAGAGG
AAGATACAATCGAAGACCTCCCACCTCCACCAACTATTCCACCTCCAGCA
GCACCAATTCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAGGAGCC
TGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTGAAGGCTCCTACAG
AAGAGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTAAGGAA
CAGGCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAGGAGCC
AGCTGCTCTAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGAGCCAG
CTACCCCAGTCATTGAGGAGCCAGCTACTCCTGTCGTTGAGGAGCTAGCT
ACTCCTGTCGTTGAGGAGCTAGCTACCCCAGTCATTGAGGAGCCAGCTAC
CCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTACCC
CAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAACCAACTACCCCA
GTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGT
CGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTCG
TTGAGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTCGTT
GAGGAACCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTTGTTGA
GGAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGG
AGCCAGCTGCCCCAGTTGTCGAGGAAACATCTATTGAGGAAACAAGTCTT
GATGAAGAACCAGCAGTTAATGATGAAAAAGAACCTGAAGTTGTTCTTCT
GAAAGCTGAAGAAGTGGGGGATGCTGATGAACTTCCTGTAATGAAAGTTG
AGGAAGTCGGACAGTCTGATGAAGCAGCTGATAAAACTGAGAACACTTTG
TTAGATGCAACGAATGTTTCTCCAATGCCAGAACCGGAAGAGTTCGACGA
TAACCCTACATATTTCATAAAAGTTACTGAGGCTAAATAAATCCAAACGA
acatttttaagtatttttaaaGCTTTACTATGCAAAATAGAAATTTCTAG
TTTTATACAGAGTATATATTGATAACTTCTTTAAAGTTTCAGGCCGTTTT
TTGAATTTGGAATGTATGAGAAAGTTATCGGTAGTTTtccttttcctgaa
tttttgtaacagagaattttcttttcatttgccATTTTTCGTGAATCAGT
TTTCGAGGTATTTGTAACAATGTTTTAGTATTTGTTTTTATCCTTTGAAC
TTTGTCATGGTAGGATGTTTTTAACATACCGTATcagtaaattatttttt
tagtatCATGTATTTATTAGTATTTTCATGTTCAGTTCCCTCGATTTTCG
CTAGTAGTTttcattttaattctttttccgatggttttttttggtccttt
tttTCAACAACGCAGAGGCTTTATTGGAGTCGAACAGAATATCGTCTCTA
TGCGagttcttgaaatttttttcaattactCTAACCTTGACCCCGAAACG
GGTTTTATCGAGGGTGAGTATTGTTTTACgttgatttttttaaagttagt
GATTCGCGAGAATTAGTCCTGTCGGTACAAAGGGATTTACGTATATTTTA
CATACGAAGCTCATTTGTAATACGGTATTTTCAGCTCATTTCTTTCAATT
AATATAAAAATCATGATCAATTTTGTACATCTTCGCCTATCGATCTCATT
GTTGATATTGTTTTTCCAGATGATTCGAT Run BLAST on NCBI transcript from alignment at sc0000007:745667..751470+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001020 ID=TCONS_00001020|Name=TCONS_00001020|organism=Clytia hemisphaerica|type=transcript|length=5804bp|location=Sequence derived from alignment at sc0000007:745667..751470+ (Clytia hemisphaerica)
AAAAGACACCAACATGTTGCTATAAAACATAAAGACAGTGAATCTTGAGA
TAAATCATTGACTGTGACTGATACAACACAATACACATATACACCAATCA
ATATATCTTGGACATTCACTTTAACCAAACCATATAATCTTCATCATGGG
CCAAAAATACTCGGTTATAAAGGATTTAACCAGGGAGGTTGAAAAATATG
AAAGGGAAAAGCGTCAATATGAGAGGGAACAGGTAAATGACCtatgtttg
aaaatttcaacatcaaaCTTCCAGACATTGGggtttttttattattctta
ATATCATttcatatctttttaaatcATAGGTAATCTTATTATTGTAGTAT
TGTGTGTTATGATTAaactttagaaatttttataaaagtaacTTTACTTT
TATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACTTTTGAG
ATTACACAACAAGACGCTTCCAaatgtattttgtttttattttattgtaa
tAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGTTCAGTG
TGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTTAAAGAG
GCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATAGTACTT
AATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACAATTTCT
TTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaaaacatt
ttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATGACACCA
CATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTGTTTCCT
TTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAAGTCTGG
TGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCGG
TTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataTTACGAT
CACCATAAACGAGACAGCACTTCTAAAGCAATATAAAGggaaaataatag
aaatttagaatataatttttttttctcattaaaaCATGACATTGCTTCCA
GTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGCATGTT
ACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCATCCTA
CTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATACTGAT
GCACCTAAAGTAGACTCTCCTGTCGAANCTTATTATTCTTAATATCATtt
catatctttttaaatcATAGGTTATCTTATTATTGTAGTATTCTGTAGTA
TTGTGTGTTATGATTAaactttagaaatttttataaaagtaacTTTACTT
TTATAAAAGGTGTTAATCTATAGATCTACATGTTCTTGTTTTACTTTTGA
GATTACACAACAAGACGCTTCCAaatgtattttgtttttattttattgta
atAGCTGtctgataaaaattgaaatttgacctGAATAGTGTTTGTTCAGT
GTGATAGCCAACTGAAACGACATCCTGTGTATTGTAATTTTCTTTAAAGA
GGCAATAAATCATAACTAAGTGGCTCCCCTTACTTTTAATTGATAGTACT
TAATGAACTGAATCATATGTATTTACCCTACCTATAATTAATACAATTTC
TTTTGCTTATTCCGATTGATttaataaagagaaaaatacaaggaaaacat
tttatttttactacAGGATGTCTCCAGTTAAGGAAACTCACCATGACACC
ACATTTCCTGCCGCAAAGCCAAATTGTTGATCAATATCGTTCTTGTTTCC
TTTAACCAATGCAAAATTTGTTTATATTACACTTTAGGCATACAAGTCTG
GTGCATTCAACAAAGACAGACCTCGATCTTCAAGAGCTAGTGATGTTTCG
GTTAGTTGCATAGTCAAAATTGaacaatttttaatttataaataTTACGA
TCACCAAAAACGAGACAGCACTTTTAAAGCAATATAAAGggaaaataata
gaaatttagaatataaattttttttctcattaaaaCATGACATGCTTCCA
GTTATTTTCTGTCTGTTCTGCCAGATGCTTTCTACACAACTTTGCATGTT
ACATTTCATTAACTGATTCTCGTGAATTGATTTTTAGTCCATTCATCCTA
CTCAATCGTTGTATCCTGACCTCAAAGAACTGGAGCAAGATGATACTGAT
GCACCTAAAGTAGACTCTCCTGTCGAAACTAGCACTCCTGCACCGGAAAG
TGATGAAGAGAGTGTCTCTGTTTTAACAGAAACTTACTCAGAAGATGTCA
AGGAAGCCAGTATTGTTGCAGAACCAGCGGAAAGCACAACTGTGGTATTA
GTTAGTGCTTCAAGTAGTGAAGCTGGTGAACCAGTAGATGACATTGATGA
AGTACCAAAAGAGAAACCTGTATTACCACTCACACCTGAATTACTGGCTG
AACGAGAAGAATCTTCTGATGTTTCCCAAGCTGCTGATATGGAGGATCGC
CCACCTGCATATGATTGCCTAGTTCAAAACACAGAAGATACACCACCTCA
ATCACCACACTATGTTAATCTTCAAACTCTATCTTCTCAAAAAGAACTTG
ATGATATTCCAATTGAAACTGAACCGGTTTCAGATACAGAGGAAGATACA
ATCGAAGACCTCCCACCTCCACCAACTATTCCACCTCCAGCAGCACCAAT
TCCTTCAACCATCCTTGAAGAAGAAGAACCTACTGAGGAGCCTGCTCTTC
CAGTTGTTGAAGAAGTTGTTCCAGTAGTAAAGGCTCCTACAGAAGAGGCT
GCCCCAGTCAGTGAGGAACAGGCTGCCCCAGTTGTTAAGGAACAGGCTGC
CCCAGTCATTGAGGAATTGGCTGCCCCAGTTGTTGAGGAGCCAGCTGCTC
TAATTGTCGAAGAGACAACCACCCCAGTTGTTGAGGAGCCAGCTACCCCA
GTCATTGAGGAGCCAGGTACTCCTGTCGTTGAGGAGCTAGCTACTCCTGT
CGTTGAGGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTCTCA
TTAAAACATGACATGCTTCCAGTTATTTTCTGTCTGTTCTGCCAGATGCT
TTCTACACAACTTTGCATGTTACATTTCATTAACTGATTCTCGTGAATTG
ATTTTTAGTCCATTCATCCTACTCAATCGTTGTATCCTGACCTCAAAGAA
CTGGAGCAAGATGATACTGATGCACCTAAAGTAGACTCTCCTGTCGAAAC
TAGCACTCCTGCACCGGAAAGTGATGAAGAGAGTGTCTCTGTTTTAACAG
AAACTTACTCAGAAGATGTCAAGGAAGCCAGTATTGTTGCAGAACCAGCG
GAAAGCACAACTGTGGTATTAGTTAGTGCTTCAAGTAGTGAAGCTGGCGA
ACCAGTAGATGACATTGATGAAGTACCAAAAGAGAAACCTGTATTACCAC
TCACACCTGAATTACTGGCTGAACGAGAAGAATCTTCTGATGTTTCCCCA
GCTGCTGATATGGAGGATCGCCCACCTGCATATGATTGCCTAGTTCAAAA
CACAGAAGATACACCACCTCAATCACCACACTATGTTAATCTTCAAACTC
TATCTTCTCAAAAAGAACTTGATGATATTCCAATTGAAACTGAACCGGTT
TCAGATACAGAGGAAGATACAATCGAAGACCTCCCACCTCCACCAACTAT
TCCACCTCCAGCAGCACCAATTCCTTCAACCATCCTTGAAGAAGAAGAAC
CTACTGAGGAGCCTGCTCTTCCAGTTGTTGAAGAAGTTGTTCCAGTAGTG
AAGGCTCCTACAGAAGAGGCTGCCCCAGTCAGTGAGGAACAGGCTGCCCC
AGTTGTTAAGGAACAGGCTGCCCCAGTCATTGAGGAATTGGCTGCCCCAG
TTGTTGAGGAGCCAGCTGCTCTAATTGTCGAAGAGACAACCACCCCAGTT
GTTGAGGAGCCAGCTACCCCAGTCATTGAGGAGCCAGCTACTCCTGTCGT
TGAGGAGCTAGCTACTCCTGTCGTTGAGGAGCTAGCTACCCCAGTCATTG
AGGAGCCAGCTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAG
GAACCAACTACCCCAGTTGTTGAGGAACCAACTACCCCAGTTGTTGAGGA
ACCAACTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAAC
CAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCA
GCTACCCCAGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAAGCAGC
TACCCCAGTTGTTGAGGAACCAGCTACCCCAGTTATTGAGGAGCCAGCCA
CCCCGGTTATTGAGGAGCCAGCCACCCCGGTTGTTGAGGAGCCAGCCACC
CCGGTTGTTGAGGAGCCAGCTACCCCAGTCGTTGAGGAGCCAGCTACCCC
AGTCGTTGAGGAGCCAGCTACCCCAGTTGTTGAGGAGCCAGCTACCCCAG
TTGTTGAGGAACCAACTACCCCAGTTGTTGAGGAGCCAGCTACCCCAGTC
GTTGAGGAGCCAACTACCCCAGTCGTTGAGGAGCCAACTACCCCAGTCGT
TGAGGAGCCAACTACCCCAGTCGTTGAGGAACCAACTACCCCAGTCGTTG
AGGAGCCAACTACCCCAGTTGTTGAGGAGCCAACTACCCCAGTCGTTGAG
GAGCCAACTACCCCAGTCGTTGAGGAGCCAGCTGCCCCAGTTGTCGAGGA
AACATCTATTGAGGAAACAAGTCTTGATGAAGAACCAGCAGTTAATGATG
AAAAAGAACCTGAAGTTGTTCTTCTGAAAGCTGAAGAAGTGGGGGATGCT
GATGAACTTCCTGTAATGAAAGTTGAGGAAGTCGGACAGTCTGATGAAGC
AGCTGATAAAACTGAGAACACTTTGTTAGATGCAACGAATGTTTCTCCAA
TGCCAGAACCGGAAGAGTTCGACGATAACCCTACATATTTCATAAAAGTT
ACTGAGGCTAAATAAATCCAAACGAacatttttaagtatttttaaaGCTT
TACTATGCAAAATAGAAATTTCTAGTTTTATACAGAGTATATATTGATAA
CTTCTTTAAAGTTTCAGGCCGTTTTTTGAATTTGGAATGTATGAGAAAGT
TATCGGTAGTTTtccttttcctgaatttttgtaacagagaattttctttt
catttgccATTTTTCGTGAATCAGTTTTCGAGGTATTTGTAACAATGTTT
TAGTATTTGTTTTTATCCTTTGAACTTTGTCATGGTAGGATGTTTTTAAC
ATACCGTATcagtaaattatttttttagtatCATGTATTTATTAGTATTT
TCATGTTCAGTTCCCTCGATTTTCGCTAGTAGTTttcattttaattcttt
ttccgatggttttttttggtccttttttTCAACAACGCAGAGGCTTTATT
GGAGTCGAACAGAATATCGTCTCTATGCGagttcttgaaatttttttcaa
ttactCTAACCTTGACCCCGAAACGGGTTTTATCGAGGGTGAGTATTGTT
TTACgttgatttttttaaagttagtGATTCGCGAGAATTAGTCCTGTCGG
TACAAAGGGATTTACGTATATTTTACATACGAAGCTCATTTGTAATACGG
TATTTTCAGCTCATTTCTTTCAATTAATATAAAAATCATGATCAATTTTG
TACATCTTCGCCTATCGATCTCATTGTTGATATTGTTTTTCCAGATGATT
CGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001020-exon-sc0000007-1491911889:745667..745898 | TCONS_00001020-exon-sc0000007-1491911889:745667..745898 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1510915933:745667..745898 | TCONS_00001020-exon-sc0000007-1510915933:745667..745898 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1575043694:745667..745898 | TCONS_00001020-exon-sc0000007-1575043694:745667..745898 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1491911889:747554..747616 | TCONS_00001020-exon-sc0000007-1491911889:747554..747616 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1510915933:747554..747616 | TCONS_00001020-exon-sc0000007-1510915933:747554..747616 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1575043694:747554..747616 | TCONS_00001020-exon-sc0000007-1575043694:747554..747616 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1491911889:748875..750011 | TCONS_00001020-exon-sc0000007-1491911889:748875..750011 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1510915933:748875..750011 | TCONS_00001020-exon-sc0000007-1510915933:748875..750011 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1575043694:748875..750011 | TCONS_00001020-exon-sc0000007-1575043694:748875..750011 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1491911889:750324..751470 | TCONS_00001020-exon-sc0000007-1491911889:750324..751470 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1510915933:750324..751470 | TCONS_00001020-exon-sc0000007-1510915933:750324..751470 | Clytia hemisphaerica | exon |
| TCONS_00001020-exon-sc0000007-1575043694:750324..751470 | TCONS_00001020-exon-sc0000007-1575043694:750324..751470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:745667..751470 + |
Blast
The following BLAST results are available for this feature:
|
