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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011699 ID=TCONS_00011699|Name=TCONS_00011699|organism=Clytia hemisphaerica|type=transcript|length=1308bp
GCATAATGGTAGATAAGCTACGCTAACAAAAAACACCTTCGAAAACTCCT
TCGACTCATTTCCACGTAAAACTACTAAACCAGACGAAATGAATTCACTT
TACAATCAAACTCCTATTGTACAAAGTTTGCATGGACCAAAAGAATGTAA
GATTTTCCTAAAGCTAGAGAATACACAGCCGAGTGGATCTTTCAAAACTC
GAGGGATCTCTTATCATTGCACAAAATTGAAAGAACGTGGATGCAAATTT
TTTGTTAGCTCTTCAGGAGGAAATGCTGGGCTTGCTGTAGCTTATTCTGG
CAGAGTTTTAAATATTACTGTGTGTGTTTTTGTTCCTACAACCACTCCAA
ATCATGTCATTGAGCGTTTGAGAAATGAAGGAGCTGAAGTGAAACAGAAA
GGAGATGTTTGGGACGAAACAAATAAGTATGCTATCGAGTTTGTCGAGAG
TATGAAAGACAAAAATGCATCTTTAGTTCATCCATTTAATCATCCAGAAA
TATGGACTGGTCATTCTACAATAGTTTCTGAGTTAAAAGAACAATTGATC
GATAAACCAAGTGTCATTGTTTTGAGTGTCGGTGGAGGTGGCTTATTATG
TGGTGTGGTCGAAGGTCTACAGAAAGTTGGATGGGATCACGTACCTGTAA
TTGCTTGTGAAACGTTTGGGGCTGATAGTTTAAACCAGgcaatgaaaaac
aataaattaacCACACTGCCAGCAATTAAGAGTATCGCAAAAAGCTTAGG
TGCATTGACGGTTGCGCAAGAAGCTTTAGACTGGACAAATAAACACAAAA
TATTACCAGTTCAAGTTACTGATCAAGAAACTATTTCAGCATGTTATAAG
TATCTTAATGACTTCAAATCTTTAGTAGAGCCTGCATGTGGTGCATCACT
AACATTGATGTATTCAGATATCTTGCAGAAACTATTGGAACAAGGGAAGT
TGTCAAATATTGATAGTGTTGTTATTATTGTTTGTGGAGGTCATTCTTTG
ACCATTGATAATCTACTGGCTTGGAAGAAGGAATTTAATGTgtgaatgaa
acaaaaatatttacaatgtttttaaatttattacagtaaagccattgacc
ttttacatagttataatgtacaatgtatgttgattcagcagattgaaata
aatagaatcttttgtaatgaataaagaaaaatgtggagcaagattttttt
cttccctttattagtagagggcattttgtaaaatcgctcgaatgttttga
tcaaagcacttgttatacatttttggaaagctaaggggtaagggaatcga
aattacga Run BLAST on NCBI protein sequence of TCONS_00011699-protein >TCONS_00011699-protein ID=TCONS_00011699-protein|Name=TCONS_00011699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MNSLYNQTPIVQSLHGPKECKIFLKLENTQPSGSFKTRGISYHCTKLKER
GCKFFVSSSGGNAGLAVAYSGRVLNITVCVFVPTTTPNHVIERLRNEGAE
VKQKGDVWDETNKYAIEFVESMKDKNASLVHPFNHPEIWTGHSTIVSELK
EQLIDKPSVIVLSVGGGGLLCGVVEGLQKVGWDHVPVIACETFGADSLNQ
AMKNNKLTTLPAIKSIAKSLGALTVAQEALDWTNKHKILPVQVTDQETIS
ACYKYLNDFKSLVEPACGASLTLMYSDILQKLLEQGKLSNIDSVVIIVCG
GHSLTIDNLLAWKKEFNV Run BLAST on NCBI transcript from alignment at sc0000131:150775..152082 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011699 ID=TCONS_00011699|Name=TCONS_00011699|organism=Clytia hemisphaerica|type=transcript|length=1308bp|location=Sequence derived from alignment at sc0000131:150775..152082 (Clytia hemisphaerica)
tcgtaatttcgattcccttaccccttagctttccaaaaatgtataacaag
tgctttgatcaaaacattcgagcgattttacaaaatgccctctactaata
aagggaagaaaaaaatcttgctccacatttttctttattcattacaaaag
attctatttatttcaatctgctgaatcaacatacattgtacattataact
atgtaaaaggtcaatggctttactgtaataaatttaaaaacattgtaaat
atttttgtttcattcacACATTAAATTCCTTCTTCCAAGCCAGTAGATTA
TCAATGGTCAAAGAATGACCTCCACAAACAATAATAACAACACTATCAAT
ATTTGACAACTTCCCTTGTTCCAATAGTTTCTGCAAGATATCTGAATACA
TCAATGTTAGTGATGCACCACATGCAGGCTCTACTAAAGATTTGAAGTCA
TTAAGATACTTATAACATGCTGAAATAGTTTCTTGATCAGTAACTTGAAC
TGGTAATATTTTGTGTTTATTTGTCCAGTCTAAAGCTTCTTGCGCAACCG
TCAATGCACCTAAGCTTTTTGCGATACTCTTAATTGCTGGCAGTGTGgtt
aatttattgtttttcattgcCTGGTTTAAACTATCAGCCCCAAACGTTTC
ACAAGCAATTACAGGTACGTGATCCCATCCAACTTTCTGTAGACCTTCGA
CCACACCACATAATAAGCCACCTCCACCGACACTCAAAACAATGACACTT
GGTTTATCGATCAATTGTTCTTTTAACTCAGAAACTATTGTAGAATGACC
AGTCCATATTTCTGGATGATTAAATGGATGAACTAAAGATGCATTTTTGT
CTTTCATACTCTCGACAAACTCGATAGCATACTTATTTGTTTCGTCCCAA
ACATCTCCTTTCTGTTTCACTTCAGCTCCTTCATTTCTCAAACGCTCAAT
GACATGATTTGGAGTGGTTGTAGGAACAAAAACACACACAGTAATATTTA
AAACTCTGCCAGAATAAGCTACAGCAAGCCCAGCATTTCCTCCTGAAGAG
CTAACAAAAAATTTGCATCCACGTTCTTTCAATTTTGTGCAATGATAAGA
GATCCCTCGAGTTTTGAAAGATCCACTCGGCTGTGTATTCTCTAGCTTTA
GGAAAATCTTACATTCTTTTGGTCCATGCAAACTTTGTACAATAGGAGTT
TGATTGTAAAGTGAATTCATTTCGTCTGGTTTAGTAGTTTTACGTGGAAA
TGAGTCGAAGGAGTTTTCGAAGGTGTTTTTTGTTAGCGTAGCTTATCTAC
CATTATGC Coding sequence (CDS) from alignment at sc0000131:150775..152082 >TCONS_00011699 ID=TCONS_00011699|Name=TCONS_00011699|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at sc0000131:150775..152082 (Clytia hemisphaerica)
tcacACATTAAATTCCTTCTTCCAAGCCAGTAGATTATCAATGGTCAAAG
AATGACCTCCACAAACAATAATAACAACACTATCAATATTTGACAACTTC
CCTTGTTCCAATAGTTTCTGCAAGATATCTGAATACATCAATGTTAGTGA
TGCACCACATGCAGGCTCTACTAAAGATTTGAAGTCATTAAGATACTTAT
AACATGCTGAAATAGTTTCTTGATCAGTAACTTGAACTGGTAATATTTTG
TGTTTATTTGTCCAGTCTAAAGCTTCTTGCGCAACCGTCAATGCACCTAA
GCTTTTTGCGATACTCTTAATTGCTGGCAGTGTGgttaatttattgtttt
tcattgcCTGGTTTAAACTATCAGCCCCAAACGTTTCACAAGCAATTACA
GGTACGTGATCCCATCCAACTTTCTGTAGACCTTCGACCACACCACATAA
TAAGCCACCTCCACCGACACTCAAAACAATGACACTTGGTTTATCGATCA
ATTGTTCTTTTAACTCAGAAACTATTGTAGAATGACCAGTCCATATTTCT
GGATGATTAAATGGATGAACTAAAGATGCATTTTTGTCTTTCATACTCTC
GACAAACTCGATAGCATACTTATTTGTTTCGTCCCAAACATCTCCTTTCT
GTTTCACTTCAGCTCCTTCATTTCTCAAACGCTCAATGACATGATTTGGA
GTGGTTGTAGGAACAAAAACACACACAGTAATATTTAAAACTCTGCCAGA
ATAAGCTACAGCAAGCCCAGCATTTCCTCCTGAAGAGCTAACAAAAAATT
TGCATCCACGTTCTTTCAATTTTGTGCAATGATAAGAGATCCCTCGAGTT
TTGAAAGATCCACTCGGCTGTGTATTCTCTAGCTTTAGGAAAATCTTACA
TTCTTTTGGTCCATGCAAACTTTGTACAATAGGAGTTTGATTGTAAAGTG
AATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011699-exon-sc0000131-1491911889:150775..152082 | TCONS_00011699-exon-sc0000131-1491911889:150775..152082 | Clytia hemisphaerica | exon |
| TCONS_00011699-exon-sc0000131-1510915933:150775..152082 | TCONS_00011699-exon-sc0000131-1510915933:150775..152082 | Clytia hemisphaerica | exon |
| TCONS_00011699-exon-sc0000131-1575043694:150775..152082 | TCONS_00011699-exon-sc0000131-1575043694:150775..152082 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000131 | supercontig | sc0000131:150775..152082 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001926 | TrpB-like_PLP-dep |
Blast
BLAST of TCONS_00011699 vs. Swiss-Prot (Human)
Match: SDHL (L-serine dehydratase/L-threonine deaminase OS=Homo sapiens GN=SDS PE=1 SV=2) HSP 1 Score: 238.81 bits (608), Expect = 4.197e-74 Identity = 153/320 (47.81%), Postives = 212/320 (66.25%), Query Frame = 2
Query: 98 LYNQTPIVQSLHGPKEC--KIFLKLENTQPSGSFKTRGISYHCTKLKERGCKFFVSSSGGNAGLAVAYSGRVLNITVCVFVPTTTPNHVIERLRNEGAEVKQKGDVWDETNKYAIEFVESMKDKNASLVH--PFNHPEIWTGHSTIVSELKEQLIDKPSVIXXXXXXXXXXXXXXXXXQKVGWDHVPVIACETFGADSLNQAMKNNKLTTLPAIKSIAKSLGALTVAQEALDWTNKHKILPVQVTDQETISACYKYLNDFKSLVEPACGASLTLMYSDILQKLLEQGKL-SNIDSVVIIVCGGHSLTIDNLLAWKKEFNV 1042
L+ +TPI S+ K ++LK+++ QPSGSFK RGI + C + ++GC FV SS GNAG+A AY+ R L + + VP+TTP IERL+NEGA VK G++ DE A E +++ N V+ PF+ P IW GH++IV ELKE L +KP I LSVGGGGLLCGVV+GLQ+VGW VPVIA ETFGA S + A KL +LP I S+AK+LG TV +AL +H I ++DQE ++A K+++D K LVEPACGA+L +YS ++QKL +G L + + S+V+IVCGG ++++ L A K++ +
Sbjct: 7 LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPSTTPALTIERLKNEGATVKVVGELLDE----AFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQLGM 322
The following BLAST results are available for this feature:
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