TCONS_00001178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001178
Unique NameTCONS_00001178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001178 ID=TCONS_00001178|Name=TCONS_00001178|organism=Clytia hemisphaerica|type=transcript|length=626bp
GTTTTATTTTGAGTGACGTTAGTGCTTGGTACTTAagtgaagaaaagaag
aagcCATGAGAACCTTAATAATTTTTACATTATTTTGTTGTTGCGCTACC
TTTGTATCAGCCGAACTTGAATCTGATGATGACCCTGGGTCAGGAGGTGG
CAAACTATCGTGCGGACAAGAATTCTTGAGATGTCGAGATGTTCTTCCAA
AAACCTCAACATCTTCAAGAGATCTCATGAAATGTGTTCACAAGCTCCGT
CAATGTCGAAGTAgggaaggaaaagaaaaagaaatcgaaCGATTACAATG
TCTTAAAAAGtgTGAAATGGTGCAAATTCTTTGTAGGAAGAATGGTGGAT
ATTTTATGCCATGTGCCTACAAATTTGTAAAGTGTCGAAGAGATTGCTCA
TATTTATAATGTGTTTTGTAGCGGTTGTTTACCTGTTTAGTGAATAATGA
CAATACTGACAATAAAAATAATGTGATACAAAAGGAAGACTCACTCTTTC
AGTTTCTTCACTATTTTCTAGATTTACGAGGTACCCTTTGAGAAGAAGTC
TTTAGGTTGAGTTTTAAGAGAGACAAAGATTAACTATTATCAATATTTGT
AAGGTATGCTTCATGATAAAGCCTAG
Run BLAST on NCBI

protein sequence of TCONS_00001178-protein

>TCONS_00001178-protein ID=TCONS_00001178-protein|Name=TCONS_00001178-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MRTLIIFTLFCCCATFVSAELESDDDPGSGGGKLSCGQEFLRCRDVLPKT
STSSRDLMKCVHKLRQCRSREGKEKEIERLQCLKKCEMVQILCRKNGGYF
MPCAYKFVKCRRDCSYL
Run BLAST on NCBI

transcript from alignment at sc0000007:706027..707313-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001178 ID=TCONS_00001178|Name=TCONS_00001178|organism=Clytia hemisphaerica|type=transcript|length=1287bp|location=Sequence derived from alignment at sc0000007:706027..707313- (Clytia hemisphaerica)
GTTTTATTTTGAGTGACGTTAGTGCTTGGTACTTAAGTGAAGAAAAGAAG
AAGCCATGAGAACCTTAATAATTTTTACATTATTTTGTTGTTGCGCTACC
TTTGTATCAGCCGAACTTGAATCTGGTAAGGTTCAGAAATTTCAGAAAAC
AGGAACACAATAAGAAAATTTTATAAATTTTATAAGAAAGTTTATTTTTG
AATATCCAACAAATTTGAAAGAATTGGCAGGAAGTTTTTTTCTAGGCAAC
GACACTAGATTTACGTTCTAGATACACTTTCTAGATCAGTGAAATAAATA
TTCTTTGCTTTTGTTCTTTTCCAGATGATGACCCTGGGTCAGGAGGTGGC
AAACTATCGGTAGGTGAACACATAATGATGAAAAATCTTTCTGAAGAAAT
TACCCTAGACTGTCGAAATCTAGACTAGCTTGCACCCAATATCTTAACTT
ACAAATTTCTTCATTTAGTGCGGACAAGAATTCTTGAGATGTCGAGATGT
TCTTCCAAAAACCTCAACATCTTCAAGAGATCTCATGAAATGTGTTCACA
AGCTCCGTCAATGTCGAAGTAGGGAAGGAAAAGAAAAAGAAATCGAACGA
TTACAATGTCTTAAAAAGGTATTCAATACTTTCATCCTTTGGCCTCTCTT
TGAAACAGCATGAAACAGATATATTCGTAATAGTAATTTTGAGATAGCTA
CAGGCTTTGCCTCAAACTCTGTGGGATAAATCCCTTTTTTAATGATTCAA
CTCTCGACTCTCGACCATGACACTCGAATGGCATTGGTAGAACGGTGTCA
TCTAGGTGTCATCGTGAATGTGAGGTCAAACCTTCGGCGAGTGTTGTGGT
ACGTCAGCAACCCCTGGAACATCTACCCCCACTCTCGTATTATATTACAC
GTGGTAACCCCTCACATGGCATGGGTTGACCTGAGTGGAGTTACACACAA
TTCCATTATCATTTTTTTCAGTGTGAAATGGTGCAAATTCTTTGTAGGAA
GAATGGTGGATATTTTATGCCATGTGCCTACAAATTTGTAAAGTGTCGAA
GAGATTGCTCATATTTATAATGTGTTTTGTAGCGGTTGTTTACCTGTTTA
GTGAATAATGACAATACTGACAATAAAAATAATGTGATACAAAAGGAAGA
CTCACTCTTTCAGTTTCTTCACTATTTTCTAGATTTACGAGGTACCCTTT
GAGAAGAAGTCTTTAGGTTGAGTTTTAAGAGAGACAAAGATTAACTATTA
TCAATATTTGTAAGGTATGCTTCATGATAAAGCCTAG

Coding sequence (CDS) from alignment at sc0000007:706027..707313-

>TCONS_00001178 ID=TCONS_00001178|Name=TCONS_00001178|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at sc0000007:706027..707313- (Clytia hemisphaerica)
TGTGAAATGGTGCAAATTCTTTGTAGGAAGAATGGTGGATATTTTATGCC
ATGTGCCTACAAATTTGTAAAGTGTCGAAGAGATTGCTCATATTTATAAT
GCGGACAAGAATTCTTGAGATGTCGAGATGTTCTTCCAAAAACCTCAACA
TCTTCAAGAGATCTCATGAAATGTGTTCACAAGCTCCGTCAATGTCGAAG
TAGGGAAGGAAAAGAAAAAGAAATCGAACGATTACAATGTCTTAAAAAGA
TGATGACCCTGGGTCAGGAGGTGGCAAACTATCGATGAGAACCTTAATAA
TTTTTACATTATTTTGTTGTTGCGCTACCTTTGTATCAGCCGAACTTGAA
TCTGTGTGAAATGGTGCAAATTCTTTGTAGGAAGAATGGTGGATATTTTA
TGCCATGTGCCTACAAATTTGTAAAGTGTCGAAGAGATTGCTCATATTTA
TAATGCGGACAAGAATTCTTGAGATGTCGAGATGTTCTTCCAAAAACCTC
AACATCTTCAAGAGATCTCATGAAATGTGTTCACAAGCTCCGTCAATGTC
GAAGTAGGGAAGGAAAAGAAAAAGAAATCGAACGATTACAATGTCTTAAA
AAGATGATGACCCTGGGTCAGGAGGTGGCAAACTATCGATGAGAACCTTA
ATAATTTTTACATTATTTTGTTGTTGCGCTACCTTTGTATCAGCCGAACT
TGAATCTGTGTGAAATGGTGCAAATTCTTTGTAGGAAGAATGGTGGATAT
TTTATGCCATGTGCCTACAAATTTGTAAAGTGTCGAAGAGATTGCTCATA
TTTATAATGCGGACAAGAATTCTTGAGATGTCGAGATGTTCTTCCAAAAA
CCTCAACATCTTCAAGAGATCTCATGAAATGTGTTCACAAGCTCCGTCAA
TGTCGAAGTAGGGAAGGAAAAGAAAAAGAAATCGAACGATTACAATGTCT
TAAAAAGATGATGACCCTGGGTCAGGAGGTGGCAAACTATCGATGAGAAC
CTTAATAATTTTTACATTATTTTGTTGTTGCGCTACCTTTGTATCAGCCG
AACTTGAATCTGTGTGAAATGGTGCAAATTCTTTGTAGGAAGAATGGTGG
ATATTTTATGCCATGTGCCTACAAATTTGTAAAGTGTCGAAGAGATTGCT
CATATTTATAATGCGGACAAGAATTCTTGAGATGTCGAGATGTTCTTCCA
AAAACCTCAACATCTTCAAGAGATCTCATGAAATGTGTTCACAAGCTCCG
TCAATGTCGAAGTAGGGAAGGAAAAGAAAAAGAAATCGAACGATTACAAT
GTCTTAAAAAGATGATGACCCTGGGTCAGGAGGTGGCAAACTATCGATGA
GAACCTTAATAATTTTTACATTATTTTGTTGTTGCGCTACCTTTGTATCA
GCCGAACTTGAATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000640XLOC_000640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001178-exon-sc0000007-1575043694:707189..707313TCONS_00001178-exon-sc0000007-1575043694:707189..707313Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1575043694:706955..706989TCONS_00001178-exon-sc0000007-1575043694:706955..706989Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1575043694:706696..706845TCONS_00001178-exon-sc0000007-1575043694:706696..706845Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1575043694:706027..706342TCONS_00001178-exon-sc0000007-1575043694:706027..706342Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1510915933:707189..707313TCONS_00001178-exon-sc0000007-1510915933:707189..707313Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1510915933:706955..706989TCONS_00001178-exon-sc0000007-1510915933:706955..706989Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1510915933:706696..706845TCONS_00001178-exon-sc0000007-1510915933:706696..706845Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1510915933:706027..706342TCONS_00001178-exon-sc0000007-1510915933:706027..706342Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1491911889:707189..707313TCONS_00001178-exon-sc0000007-1491911889:707189..707313Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1491911889:706955..706989TCONS_00001178-exon-sc0000007-1491911889:706955..706989Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1491911889:706696..706845TCONS_00001178-exon-sc0000007-1491911889:706696..706845Clytia hemisphaericaexon
TCONS_00001178-exon-sc0000007-1491911889:706027..706342TCONS_00001178-exon-sc0000007-1491911889:706027..706342Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001178-proteinTCONS_00001178-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:706027..707313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0850785	0.16593	0.192661	1.22517	0.573666	0.0906637	0.328146	0.51201	0.35847	0.266414	1.37914	0.169985	7.63871	5.46487	0.289862	0.155533	0.383209	0.589165	25.2329	10.4103	1.31614	2.88885	0.487747	0.26606	2.00959	1.22285	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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