TCONS_00011425 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011425
Unique NameTCONS_00011425
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011425 ID=TCONS_00011425|Name=TCONS_00011425|organism=Clytia hemisphaerica|type=transcript|length=612bp
ATCGTCCATCTTTGGAAAAATTTACGATACCAATATTGTCgtattttaga
aaaacatgttAAATACACAATAGGATTCGAAATAACATTGACCAATGCAA
ATAAACCATCCAATTTGAGGCCTAACTCGGATACGTCTGTCACGAGAAAA
GTCAAAGAGCAGAACACCATAGGTAAAAGAAAGACGCAAGTCCAGATATT
CAGTTTCATAACATCTTTGACACTTCTTTTCAACTTGATAATTACATCCA
ACCTTTCTGCTTCTACACCGTGAAGATTTTCTGCATGTGGTCTGTTTGCT
TCGCTCTCATCACGCAAACAAATTGTTAATTTCCCCAGAACAAGTACAGC
AACACAGGTGACTGTTCGTAAAATGAAGAGAAACGATAAGATACCGCGAT
tcgtgaaaaattcttttcttttgacatcaagaataaaaaacaaacaactc
AACGAGACTGCAcaaaaaatgcctgaaatagaTACAGCAATGTTGATCTT
ACGTTTGGAGACGATTTCTTGATATCGTAAAGGGTATTTGACAGCTATCC
ATCGGTCGGTGATTATCAAGACAGTGATAAGCATCGATGAAGCGTGAAAG
ATGAATATAAAC
Run BLAST on NCBI

protein sequence of TCONS_00011425-protein

>TCONS_00011425-protein ID=TCONS_00011425-protein|Name=TCONS_00011425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
FIFIFHASSMLITVLIITDRWIAVKYPLRYQEIVSKRKINIAVSISGIFC
AVSLSCLFFILDVKRKEFFTNRGILSFLFILRTVTCVAVLVLGKLTICLR
DESEANRPHAENLHGVEAERLDVIIKLKRSVKDVMKLNIWTCVFLLPMVF
CSLTFLVTDVSELGLKLDGLFALVNVISNPIVYLTCFSKIRQYWYRKFFQ
RWT
Run BLAST on NCBI

transcript from alignment at sc0000127:565206..565817

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011425 ID=TCONS_00011425|Name=TCONS_00011425|organism=Clytia hemisphaerica|type=transcript|length=612bp|location=Sequence derived from alignment at sc0000127:565206..565817 (Clytia hemisphaerica)
GTTTATATTCATCTTTCACGCTTCATCGATGCTTATCACTGTCTTGATAA
TCACCGACCGATGGATAGCTGTCAAATACCCTTTACGATATCAAGAAATC
GTCTCCAAACGTAAGATCAACATTGCTGTAtctatttcaggcattttttg
TGCAGTCTCGTTgagttgtttgttttttattcttgatgtcaaaagaaaag
aatttttcacgaATCGCGGTATCTTATCGTTTCTCTTCATTTTACGAACA
GTCACCTGTGTTGCTGTACTTGTTCTGGGGAAATTAACAATTTGTTTGCG
TGATGAGAGCGAAGCAAACAGACCACATGCAGAAAATCTTCACGGTGTAG
AAGCAGAAAGGTTGGATGTAATTATCAAGTTGAAAAGAAGTGTCAAAGAT
GTTATGAAACTGAATATCTGGACTTGCGTCTTTCTTTTACCTATGGTGTT
CTGCTCTTTGACTTTTCTCGTGACAGACGTATCCGAGTTAGGCCTCAAAT
TGGATGGTTTATTTGCATTGGTCAATGTTATTTCGAATCCTATTGTGTAT
TTaacatgtttttctaaaatacGACAATATTGGTATCGTAAATTTTTCCA
AAGATGGACGAT

Coding sequence (CDS) from alignment at sc0000127:565206..565817

>TCONS_00011425 ID=TCONS_00011425|Name=TCONS_00011425|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000127:565206..565817 (Clytia hemisphaerica)
TTTATATTCATCTTTCACGCTTCATCGATGCTTATCACTGTCTTGATAAT
CACCGACCGATGGATAGCTGTCAAATACCCTTTACGATATCAAGAAATCG
TCTCCAAACGTAAGATCAACATTGCTGTAtctatttcaggcattttttgT
GCAGTCTCGTTgagttgtttgttttttattcttgatgtcaaaagaaaaga
atttttcacgaATCGCGGTATCTTATCGTTTCTCTTCATTTTACGAACAG
TCACCTGTGTTGCTGTACTTGTTCTGGGGAAATTAACAATTTGTTTGCGT
GATGAGAGCGAAGCAAACAGACCACATGCAGAAAATCTTCACGGTGTAGA
AGCAGAAAGGTTGGATGTAATTATCAAGTTGAAAAGAAGTGTCAAAGATG
TTATGAAACTGAATATCTGGACTTGCGTCTTTCTTTTACCTATGGTGTTC
TGCTCTTTGACTTTTCTCGTGACAGACGTATCCGAGTTAGGCCTCAAATT
GGATGGTTTATTTGCATTGGTCAATGTTATTTCGAATCCTATTGTGTATT
TaacatgtttttctaaaatacGACAATATTGGTATCGTAAATTTTTCCAA
AGATGGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006411XLOC_006411Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011425-proteinTCONS_00011425-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011425-exon-sc0000127-1491911889:565206..565817TCONS_00011425-exon-sc0000127-1491911889:565206..565817Clytia hemisphaericaexon
TCONS_00011425-exon-sc0000127-1510915933:565206..565817TCONS_00011425-exon-sc0000127-1510915933:565206..565817Clytia hemisphaericaexon
TCONS_00011425-exon-sc0000127-1575043694:565206..565817TCONS_00011425-exon-sc0000127-1575043694:565206..565817Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:565206..565817 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.392099	0.0991248	0.389724	0.241328	3.68029	2.62677	0.452727	0.741716	0.339234	0.367559	0.131201	0.699121	0	0	0	0	5.74487	3.98323	0	0	0.197946	0	0.443569	0.662569	0	0	1.0494	1.48496	0	0.099552
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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