TCONS_00011411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011411
Unique NameTCONS_00011411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011411 ID=TCONS_00011411|Name=TCONS_00011411|organism=Clytia hemisphaerica|type=transcript|length=484bp
caagtattcaacagccttgaaattaacatgcAAAAAATGAACACAAATTT
Tatctgctttttcaaggacaccacggctggttttaattaagggggttttt
attaacacaaaatttttcctatttgtgttaataaaatgactagtaatatt
tgtgtaataaatAAGGTAGGTCTAAGTGTGATATCAACTGTCATTGAACT
TAATTTCTTAACTTAGCTTAGCCATTGACTGGTTTGAAACTGACTCCTCA
GCAAAAAAAGAAGCttgttggatgaaaatttatTAGATTGACACTGTAGC
AACTTTAGAAGTCATCCAACTTTTGTTGATGTCAAACCAAATGATTCATT
TTTCTGTGAACTTTGAatcttttattcttttcttaTACATGCTAAAGCAT
TccagtttttactaaaagaaagccaGTGATCTTACTTTTCCAGCGGCATA
TAACACTGTAGAATCTGGCTAGACAGCAAATTGG
Run BLAST on NCBI

transcript from alignment at sc0000127:59615..60098

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011411 ID=TCONS_00011411|Name=TCONS_00011411|organism=Clytia hemisphaerica|type=transcript|length=484bp|location=Sequence derived from alignment at sc0000127:59615..60098 (Clytia hemisphaerica)
CCAATTTGCTGTCTAGCCAGATTCTACAGTGTTATATGCCGCTGGAAAAG
TAAGATCACtggctttcttttagtaaaaactggAATGCTTTAGCATGTAt
aagaaaagaataaaagatTCAAAGTTCACAGAAAAATGAATCATTTGGTT
TGACATCAACAAAAGTTGGATGACTTCTAAAGTTGCTACAGTGTCAATCT
AataaattttcatccaacaaGCTTCTTTTTTTGCTGAGGAGTCAGTTTCA
AACCAGTCAATGGCTAAGCTAAGTTAAGAAATTAAGTTCAATGACAGTTG
ATATCACACTTAGACCTACCTTatttattacacaaatattactagtcatt
ttattaacacaaataggaaaaattttgtgttaataaaaacccccttaatt
aaaaccagccgtggtgtccttgaaaaagcagatAAAATTTGTGTTCATTT
TTTgcatgttaatttcaaggctgttgaatacttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006397XLOC_006397Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011411-exon-sc0000127-1491911889:59615..60098TCONS_00011411-exon-sc0000127-1491911889:59615..60098Clytia hemisphaericaexon
TCONS_00011411-exon-sc0000127-1510915933:59615..60098TCONS_00011411-exon-sc0000127-1510915933:59615..60098Clytia hemisphaericaexon
TCONS_00011411-exon-sc0000127-1575043694:59615..60098TCONS_00011411-exon-sc0000127-1575043694:59615..60098Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000127supercontigsc0000127:59615..60098 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.136284	0.253358	0.295439	0.666068	0	0.137479	0	0	0.130455	0	0	0	0	0.0891046	0.381905	0	0.097503	0.297796	0	0.143508	0	0	0	0.156417	0.138512	0.123619	0.180521	0.226384	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top