TCONS_00001147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001147
Unique NameTCONS_00001147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2036

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001147 ID=TCONS_00001147|Name=TCONS_00001147|organism=Clytia hemisphaerica|type=transcript|length=2036bp
ACGGTTTTCAAGCACCTGAAGTACGGTTTAGTTCACCTTATGACGAAAAG
GTTGACATCTTTTCCTTTGGAATTTGGCTTTACGAGTTGTTGTCCGGCTA
TCGACCGTTCCGCACTTTTCGGACAGGATCAGAGATGAAAAAGGCTATAC
TTCGTGGTGTTCGACCAAACTTGAGACAAGATTTCATCAACTCAGATCTT
CCATTCCTCGAATGTATCATGGAGGACTGCTGGCAACAGAATCCGAACAG
TCGACCTTCCTCTCAAGAACTTGCCATGTGTTTGAAGCAACCCGATGTTT
GTATGCTGCAAAACATCTATCCTCCTTCCGATGTGCTGACCTTGCAGAAA
GTTCGTGTCGCTATCCCATGGACTCGCTCTGaaaaatcagcAAAGGAAGA
AGAGATTTTAATTTGGTCAGAGTATGGAGCCGACAGACGCTACCAGTTGA
TCGACATTCGTAATGATAAACCttctaacaacaacaacaatcgaGAAAAA
ATCTTGGCTGGTCCCAGGATTCTTTGCGCATGTCAAGTGGAGAATCATGT
TTGGTTGGGAAACGAGGTATCAAAGGGATGTCAAATCGAAGTATTTGGCC
AGCTCTCTAACCAACAGAGACCGTCCATTTTATGGAAGTTCTCATTGGCC
AAACTGAAGTATGCTCTTGACATGAAGACCTATCAACATGACGGCATTCT
GAAGGTGTTCGCATCTTTGGTGGACGGTCATTTATGTATATTCACCAAAG
ACTTGCACAGCACCTCCAACAGTCGCCCTATCTTCGACGAAACTGAAGAG
GATATTGTTCAATTCGAAAAAGATAAATGGGACGTTCAAGATTTGAATCT
AGGTACACGAGGTTATCCAGCAAAATGTATGAGCTTAACACGAAACAATA
CAGAATTGTGGGTAGGTTCTGGCAGTCTGATAGTGATTGTTGATCCACAT
AGTAACACCATCAAAGAGCACATCGAAACCACCATTCGCACCAATCGCCT
TATTTCACTGATGACGTCAGATGAATTTGACAACATGTGGACGTGTGAAC
GCGGTATGTCTTTCGTCACGCAATGGGATGTGGCCTCGCGTACTAAATTA
TGGGAATTTCAATGTAATATTGAGAATCCTGTTGATCGTGTTTTAGTATG
TGAGAACACGGGCCACAGAAGTGACTCAGTGACGTCAGTAGATGAAGTTT
TTGTTGAGAGTATCAACAATGCGAAGAAAGATGAAACTGAAGTCATTGCA
GAAATCCTCGACCTCAAGCCAGTCCCACCTCGTTCACGAACGATCTCTAT
CACCAAACCTGACAAAATAAGGCGAATTTCGGATGGCTTGTTTGGTACTT
CGCCGACCAAAGGTAAATCCAAGGATGATAAAGCTCGTTCGAAATCTGAT
GACGCTCCTTTGAGTAGCTCACCAAAGAAAAGTCATTTTGCGAAagaaga
aaactttttgaaagatCTCGTTAAACCTGATGGTTTTGTTAAACGTTCAT
TGGTCAAAAAACCGTCTCTGATGCACCCTACGAATGGTCGATCAACACGT
AAGAAACAAGAACAAGTACACGCAGAACTTCTCAGCAACTCACTACCACG
ACAGCGCACTGGTAACGTAGTGACTGGTAAACCTGTACGTGTAACCGGCC
TCGTTTATGCTAAAGATGCGTTATGGGTTGGTCGGAATAATGGAGACATT
CTGGTCATTGCTATGAAGAATACAGAGCAAGTGAGTAACGGTACAGTGTT
GGCGGTTCTTGGTGGTCTTCAGGTGCGCTCGCTTGGTGGCACCAGCAGGA
CGATCACAAGTTTGTCCAGAATTTCAGAAGATCGTATGTTGGCTTTGGTC
AAATTCGATAACAAGACAAACACAAAGTCACCACGACTTCTTCGCACATC
AGAGTCAGCGCCCGCCTTTGAGAATTATCAGTTGTTGAAATATGATATCA
AATCTACTGATGAGATTGTACAATTCAAATCCCGTCAAGTTTTAAATCAT
TCATGATccgaattttttattttcataacttatttt
Run BLAST on NCBI

transcript from alignment at sc0000007:513015..516456-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001147 ID=TCONS_00001147|Name=TCONS_00001147|organism=Clytia hemisphaerica|type=transcript|length=3442bp|location=Sequence derived from alignment at sc0000007:513015..516456- (Clytia hemisphaerica)
ACGGTTTTCAAGCACCTGAAGTACGGTTTAGTTCACCTTATGACGAAAAG
GTTTGTATTCTTTTTATTCTAGTGCAAACCATGTTATGGAAAATGCTTTT
TAGATCTAGTTGAAATCGCGTGGATTCACCTTTCACTAAAAACGTCTATT
TTAAAAGAAGTCATCTACTCAATATCTGTCCTTGCAAGACTTGATCCCGA
AATCTCACAACTTTCCTTTTTTTAATCTTACAGGTTGACATCTTTTCCTT
TGGAATTTGGCTTTACGAGTTGTTGTCCGGCTATCGACCGTTCCGCACTT
TTCGGACAGGATCAGAGATGAAAAAGGCTATACTTCGTGGTGTTCGACCA
AACTTGAGACAAGATTTCATCAACTCAGATCTTCCATTCCTCGAATGTAT
CATGGAGGTATTCTCAATTTTCTCGCCTACTTCCAAACATGCTTAATATT
GATTAGTGAAATTCAAGGCAAAAGGCACAATTTTCTTATCAGCAATTATT
TTGATCGTTTAAGTATGTGAATATACATCCGTCACATTGGGCCATTTCAT
TTTATATCCATACAGGGGGGGCTGTATGGATTTTTAATGAAACAGTCCAT
TAAGACATCAGAACCATAGTATTTTTTACTGACGAATATTTTATTGATCG
ATGAAGTTTTCGGATATGCCATTTTCTTCTTATGGGTCCAGTTTTTGTGG
GATCATAGATTTTAATTTTATTTTTTCTCTTTGGTAGGACTGCTGGCAAC
AGAATCCGAACAGTCGACCTTCCTCTCAAGAACTTGCCATGTGTTTGAAG
CAACCCGATGTTTGTATGCTGCAAAACATCTATCCTCCTTCCGATGTGCT
GACCTTGCAGAAAGTTCGTGTCGCTATCCCATGGACTCGCTCTGGTAAGT
TTCCTACATAGTTTCAAGAGGATTACATCCTCTGCTAAACCCCATGTGTA
AGATTTTCTTTTTTTGTCCGCGAATTAAATATCTGTAAACACTATCAAGC
TTTCTTTGAGTTAAAAGAAAAAAATTTTTTTTTTGGAAAGGGCTTGGTAC
TCAAAAAATGAAAGAGTGATTTTAGGCTTACTTTAAAGAAAAAGTTGAAC
ACGAAGAATGTCGGTGCTCTAAGAATTATCAATGGATTGCTTTTAGAAAA
ATCAGCAAAGGAAGAAGAGATTTTAATTTGGTCAGAGTATGGAGCCGACA
GACGCTACCAGTTGATCGACATTCGTAATGATAAACCTTCTAACAACAAC
AACAATCGAGAAAAAATCTTGGCTGGTCCCAGGATTCTTTGCGCATGTCA
AGTGGAGAATCATGTTTGGTTGGGAAACGAGGTATCAAAGGTATAGGTTC
CAATACCAGAAATGTTCGTTATTCGCATGTAATACGCATTCTGCTTACAT
TATATTACCTTGGAGAAACGAAATAAGTTTTCATATGAAGACTATCCATT
CATTGAGTGTTTTTTTTGGTTTATCCATTCATTGAGTGATGTTGAGTATT
TGTTCAAAAATAATCACTTATTCATCTCCCTAATCATTTCCAGGGATGTC
AAATCGAAGTATTTGGCCAGCTCTCTAACCAACAGAGACCGTCCATTTTA
TGGAAGTTCTCATTGGCCAAACTGAAGTATGCTCTTGACATGAAGACCTA
TCAACATGACGTGAGAATTCTGTTTGATAATTTTACAGTGTTTGTATCCT
ATAAATTGACATCTGTTGGCAGAAATTCGTCACCATTTTTTTTGACAATC
CTCTCCGCAAACAAGTTCGTACCACTGACATTTTGAGTTTGAATTTTGTA
TGTCCTGTTCCCTAAACACAAGTCCTAGGGGCATTGCTGGAATTTCCAGA
TTCGTGTATTTTGCAGACAATCAAATGTTGATCTTTTTTACCACGATATG
AAATATTATTCTATTGTTCCTTCTTTTCTTCTGCACAGGGCATTCTGAAG
GTGTTCGCATCTTTGGTGGACGGTCATTTATGTATATTCACCAAAGACTT
GCACAGCACCTCCAACAGTCGCCCTATCTTCGACGAAACTGAAGAGGATA
TTGTTCAATTCGAAAAAGATAAATGGGACGTTCAAGTAGGGTTCTCTATC
TTTCGATTCTTTTTTAGCCATCGCCCTTATCCCAGCGATTTACTAGTAGG
AAGGATAACGATAGTTGGACCAGGCCTTCATGTGTCTCCTCCCTCGCTGT
CCTATTTATACTGTGATAACAGATTTGCAACGATTCTCTTTTCAGGATTT
GAATCTAGGTACACGAGGTTATCCAGCAAAATGTATGAGCTTAACACGAA
ACAATACAGAATTGTGGGTAGGTTCTGGCAGTCTGATAGTGATTGTTGAT
CCACATAGTAACACCATCAAAGAGCACATCGAAACCACCATTCGCACCAA
TCGCCTTATTTCACTGATGACGTCAGATGAATTTGACAACATGTGGACGT
GTGAACGCGGTATGTCTTTCGTCACGCAATGGGATGTGGCCTCGCGTACT
AAATTATGGGAATTTCAATGTAATATTGAGAATCCTGTTGATCGTGTTTT
AGTATGTGAGAACACGGGCCACAGAAGTGACTCAGTGACGTCAGTAGATG
AAGTTTTTGTTGAGAGTATCAACAATGCGAAGAAAGATGAAACTGAAGTC
ATTGCAGAAATCCTCGACCTCAAGCCAGTCCCACCTCGTTCACGAACGAT
CTCTATCACCAAACCTGACAAAATAAGGCGAATTTCGGATGGCTTGTTTG
GTACTTCGCCGACCAAAGGTAAATCCAAGGATGATAAAGCTCGTTCGAAA
TCTGATGACGCTCCTTTGAGTAGCTCACCAAAGAAAAGTCATTTTGCGAA
AGAAGAAAACTTTTTGAAAGATCTCGTTAAACCTGATGGTTTTGTTAAAC
GTTCATTGGTCAAAAAACCGTCTCTGATGCACCCTACGAATGGTCGATCA
ACACGTAAGAAACAAGAACAAGTACACGCAGAACTTCTCAGCAACTCACT
ACCACGACAGCGCACTGGTAACGTAGTGACTGGTAAACCTGTACGTGTAA
CCGGCCTCGTTTATGCTAAAGATGCGTTATGGGTTGGTCGGAATAATGGA
GACATTCTGGTCATTGCTATGAAGAATACAGAGCAAGTGAGTAACGGTAC
AGTGTTGGCGGTTCTTGGTGGTCTTCAGGTGCGCTCGCTTGGTGGCACCA
GCAGGACGATCACAAGTTTGTCCAGAATTTCAGAAGATCGTATGTTGGCT
TTGGTCAAATTCGATAACAAGACAAACACAAAGTCACCACGACTTCTTCG
CACATCAGAGTCAGCGCCCGCCTTTGAGAATTATCAGTTGTTGAAATATG
ATATCAAATCTACTGATGAGATTGTACAATTCAAATCCCGTCAAGTTTTA
AATCATTCATGATCCGAATTTTTTATTTTCATAACTTATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000631XLOC_000631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001147-exon-sc0000007-1575043694:516407..516456TCONS_00001147-exon-sc0000007-1575043694:516407..516456Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1575043694:516050..516223TCONS_00001147-exon-sc0000007-1575043694:516050..516223Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1575043694:515563..515719TCONS_00001147-exon-sc0000007-1575043694:515563..515719Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1575043694:515117..515310TCONS_00001147-exon-sc0000007-1575043694:515117..515310Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1575043694:514797..514913TCONS_00001147-exon-sc0000007-1575043694:514797..514913Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1575043694:514372..514518TCONS_00001147-exon-sc0000007-1575043694:514372..514518Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1575043694:513015..514211TCONS_00001147-exon-sc0000007-1575043694:513015..514211Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1510915933:516407..516456TCONS_00001147-exon-sc0000007-1510915933:516407..516456Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1510915933:516050..516223TCONS_00001147-exon-sc0000007-1510915933:516050..516223Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1510915933:515563..515719TCONS_00001147-exon-sc0000007-1510915933:515563..515719Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1510915933:515117..515310TCONS_00001147-exon-sc0000007-1510915933:515117..515310Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1510915933:514797..514913TCONS_00001147-exon-sc0000007-1510915933:514797..514913Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1510915933:514372..514518TCONS_00001147-exon-sc0000007-1510915933:514372..514518Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1510915933:513015..514211TCONS_00001147-exon-sc0000007-1510915933:513015..514211Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1491911889:516407..516456TCONS_00001147-exon-sc0000007-1491911889:516407..516456Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1491911889:516050..516223TCONS_00001147-exon-sc0000007-1491911889:516050..516223Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1491911889:515563..515719TCONS_00001147-exon-sc0000007-1491911889:515563..515719Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1491911889:515117..515310TCONS_00001147-exon-sc0000007-1491911889:515117..515310Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1491911889:514797..514913TCONS_00001147-exon-sc0000007-1491911889:514797..514913Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1491911889:514372..514518TCONS_00001147-exon-sc0000007-1491911889:514372..514518Clytia hemisphaericaexon
TCONS_00001147-exon-sc0000007-1491911889:513015..514211TCONS_00001147-exon-sc0000007-1491911889:513015..514211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:513015..516456 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05751	0.960664	0.807329	0.518466	1.40276	8.82651e-05	0.951369	2.33901	1.43146	0.895452	1.14628	0.916551	0.861242	2.14183	2.21077	2.69689	1.47457	1.97617	2.35533	0.94712	1.12763	0.79287	1.48208	1.72805	0.960327	2.79976	0.961741	0.9618	2.10364	1.7757
Blast
[Close]
BLAST of TCONS_00001147 vs. Swiss-Prot (Human)
Match: LRRK1 (Leucine-rich repeat serine/threonine-protein kinase 1 OS=Homo sapiens GN=LRRK1 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.131e-19
Identity = 86/394 (21.83%), Postives = 162/394 (41.12%), Query Frame = 3 
Query:    3 GFQAPEVRFSSPYDEKVDIFSFGIWLYELLSGYRPFRTFRTGSEMKKAILRGVRPNLRQDFINSDLPF--LECIMEDCWQQNPNSRPSSQELAMCLKQPDVCMLQNIYPPSDVLTLQKVRVAIPWTRSEKSAKEEEILIWSEYGADRRYQLIDIRNDKPSXXXXXREKILAGPRILCACQVENHVWLGNEVSKGCQIEVFGQ--LSNQQR----PSILWKFSLAKLKYALDMKTYQHDGILKVFASLVDGHLCIFTKDLHSTSNSRPIFDETEEDIVQF------EKDKWDVQDLNLGTRGYPAKCMSLTRNNTELWVGSGSLIVIVDPHSNTIKEHIETTIRTNRLISLMTSDEF---DNMWTCERGMSFVTQWDVASRTKLWEFQCNIENPV 1133
            G+QAPE+R    YDEKVD+FS+G+ LYELLSG RP        ++ K + +G+RP L Q     ++ F  L+ +M +CW   P  RP +  +   +K P                + ++             +E  ++ W      R Y +++            +     G ++ C  QV+  +W   E  K     + G   L+  Q+    P+++  F        L +   + +  L V A L DG + +F           P+   T +D   +       + K+ + D +     YP K M +  + +E+W  +G  ++++D  S  I   +E  +  + + S++ S E    + +W  +   + +  +   +      + C + +P+
Sbjct: 1429 GYQAPEIRPRIVYDEKVDMFSYGMVLYELLSGQRPALGHHQ-LQIAKKLSKGIRPVLGQP---EEVQFRRLQALMMECWDTKPEKRPLALSVVSQMKDPTFATF-----------MYELCCGKQTAFFSSQGQEYTVVFWDGKEESRNYTVVNTEKG----LMEVQRMCCPGMKVSCQLQVQRSLWTATEDQKIYIYTLKGMCPLNTPQQALDTPAVVTCF--------LAVPVIKKNSYL-VLAGLADGLVAVF-----------PVVRGTPKDSCSYLCSHTANRSKFSIADEDARQNPYPVKAMEVVNSGSEVWYSNGPGLLVIDCASLEICRRLEPYMAPSMVTSVVCSSEGRGEEVVWCLDDKANSLVMYHSTTYQLCARYFCGVPSPL 1783
The following BLAST results are available for this feature:
BLAST of TCONS_00001147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRK11.131e-1921.83Leucine-rich repeat serine/threonine-protein kinas... [more]
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