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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011079 ID=TCONS_00011079|Name=TCONS_00011079|organism=Clytia hemisphaerica|type=transcript|length=2098bp
AAAACCGCAgtatataatttttcttttgtttacttcgGAATGATGCCCAA
ATTTGATAAAGGGGTGTAATTTTGAACCCAAAGAAAGAGATCCTGGGTGA
TCTAAATCATAAAAGAATTTGCTGGAGAGTCTCTTTGAAATTGCTGTAGC
TTGGTGTAACTGTAGTTTTAGATCTTTTTTTCGGTAgccttttttgttta
taatgGAGCCTGTCAGCGgtgaaagttttttgaagtcGTTGTATTGTCGG
TAgttcggtttttttttaaagtgacgTCGCAAAAAGTGAAGATGTTTTCT
GTTGATCATTTTTCAAGAGTTTGTTTGAAAGAAGGTCGTTATAACAAGCa
gtgttttgtttttgctgtTGAAATTGATCGAGAGTCATCTTATGTTGTCA
acATCCGGGGAAAATCTAAAGCATCAGTAACACAATATCAAaccaaatcc
aaaaagaaacCAACCAACAAACACATAACCATTTGCTAGTAGAAACCACT
CCATCTCTTACGAAGGCCAAATCATGGCAATGTTAGCAGCAAGTATCCAA
gaactggtttccatcaagatcAAGCCAAGACATGATGGAATCACTGATCA
ATACAATCGTATTTTCATGGTCAAGATATGTTTGATTTGCGCTGCTATCA
TTGGTGTGAATTACTTCAGTGATAAAGTATCGTGTATTGTGGCAAATGGG
AATGGTATGGATGGTGCGTTTGTTGGAAGTGCTTGCTGGATTCAAgGATT
CTACATTTTCGAGGAAATGAAGACTCGATTGGATCAATCAGGGTATTACG
GTATCCCACGCAACATGGATTATGACGGCATCAATCCTCTCGGTCAACTT
TGCACCACAAGTGATCGTGCATTGGACCCTGTAGAGCAATGTACTCCCAT
GGAGAAAGTGTTCTATCTTCAATACCAGTATATGCCATTCTTCGTTGCAT
CACTGGCTTTATTGTTTTACGTGCCTTATTTGGCGTTCACTTTCACCAAC
GCAGATCTGGTGTTGCTCAAGGATTACCTCAAGGCTGGAAGTGTAGATTC
AGATGATTTGTTGAAGAAATTCTTTGATCAGAAAAAGAATCGACGTAAAA
AGATGAGATATCGTGTGTTCTCATTGTTGCTGGTCAAACTGATGTATCTG
CTGGTCAACGTTGTGGCGCTGTTAGCTTGCCACGTCCTGCTTCATCACAA
ATTTCTGACCTATGGTCGTGATTATCTGCAATGGACGGACTTGGATCACA
ATTTGGCACACGAGCACAATTTGAGAGAACGTCATAGTCCTAAACCAGGA
AATGCGTTACTTCCTCCCATGGGCCTTTGCGAGATCCATGAAGCATCGCG
CGACGTACGCAACACACATGTCAATCAACATAAGTTCATTTGTGAAGTCT
CGCCCCACGTGTTGTATCAATACGTCTTATTGGTCCTTTGGTTCGGCCTT
GTAATCGGCATCGTAGTCTCAGTCATCGGTGTCCTAATGAATCTCTTTGG
ACATCTCCTCAATTTTGCCTGCTTCATGAGCTCATCCGACCCTGCACGCC
GTATGTACCGCGCGATCACGTTGAGAGAGATTGATTATCTGGAGTATATA
CGCCGTAACAACATGCCGATCTACGTGGAGCTTCTACGTAAGATCAGAGA
TGCCAGATCTATCACTTTTAAAGGCAAAGAGAAATACGGATACACCGGTG
TTGAACTTTAAATGATGAAAAACTTTCTTGGATTTTCGTCTTGTCTCATG
TCAATCTTTCAATGATATGTGGACACCCTCTTAAAAGAATTCCGTGAACT
TCCTGTATAGACCAAAAGCTAACTAAGTTAATTTTTGGTTATAATTTGGA
GATTACCTCCATGGTTCGTCCAATCCTGTGATTAATCTTATGATTTCAAT
TTGTTTGGCTGATTGTACAGCTTTGGTAATTCTTTACTAAGTCAATAGCC
TCGTGAAATTAATTTGTTTTGCTATCGACTACAGTACCTAAAAAGAATTT
ATCCTCAAATACCATTTTTCACATCCCAAAGACTATCATAAGAACTTTTT
TCAGATGTAACGTATTTcagtttttatgaaaaaaaaagtcaaaattct Run BLAST on NCBI transcript from alignment at sc0000121:137022..141121+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011079 ID=TCONS_00011079|Name=TCONS_00011079|organism=Clytia hemisphaerica|type=transcript|length=4100bp|location=Sequence derived from alignment at sc0000121:137022..141121+ (Clytia hemisphaerica)
AAAACCGCAgtatataatttttcttttgtttacttcgGAATGATGCCCAA
ATTTGATAAAGGGGTGTAATTTTGAACCCAAAGAAAGAGATCCTGGGTGA
TCTAAATCATAAAAGAATTTGCTGGAGAGTCTCTTTGAAATTGCTGTAGC
TTGGTGTAACTGTAGTTTTAGATCTTTTTTTCGGTAgccttttttgttta
taatgGAGCCTGTCAGCGgtgaaagttttttgaagtcGTTGTATTGTCGG
TAgttcggtttttttttaaagtgacgTCGCAAAAAGTGAAGATGTTTTCT
GTTGATCATTTTTCAAGAGTTTGTTTGAAAGAAGGTCGTTATAACAAGCa
gtgttttgtttttgctgtTGAAATTGATCGAGAGTCATCTTATGTTGTCA
GTAAGTATAATGATATATGTCTTTTGCTTCGTTGCTTCACAAATGCTGGA
TTGCCAGATATTTAAAAATGTGTCACGTAAAAACCAAGAGAGTGCTagat
ttaaagtctattcacgataagtgtgcactcttttttcatttacctataac
ttttgaaggaattcttcaatttttataaatttggtatcattggaaagatg
ttagtgagtggaacaatttgaaattaaaaaatctttaaaaaaattataaa
aatgaagatgaaaataaaNNNNNNNNNNNNNNNNNNNNNNNNNNctcctt
gattatcgaacattatcactgtgaaaaaatttctcaaaaataatcattca
gtcaaaagatatcaagcaaagttataagctgattgacgtctaaaagcggt
gttttctgctgttttttgctgttttttggggtcaatcacttatcaacttt
gtatcataactttttaatgaatatatattttagtaaaactttttcacagt
gatgatctcctaagaccaaagaatctctccagtgaaaatgaaagttatag
cacttttctacaagatcttcatttttttcttcttcattttcatgttcatt
tttagaattctttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctccaacgat
accaaatttataaagattgaagaattccttcaaaagttataggtgaaaga
aaaaagagtgcacacttatcgtgaacagactttaatcaTTCATCTGAAAT
GTGGCGCAAATTTTAAGGCGCAAATTTTTCTTGCGTGACAAAGGTTATGG
ATAGATTCCTCTCTAGTCTTCAGCTAACgataaaaaatcattattttcat
tGGCTACTTTGGGCCATGATATTTACAAAATCTAACATATATTTAACATG
ATGACGTACCTTAAATGGGTTAAATTTTGGTGtggattaaatttggcaaa
taataaaatatactgaaaaattcgcaaaattaaatccccgccaaattaaa
caaaaagaatattacGTAAAAAATAACAACTTTTCAGTATATTTTATAGT
AAATTTTACCCATTTAAGTGTCTCAAAATTTGcatttcgccaaattaaat
ccccgtcaaaaatcgtattttggccaatcgctaaattaaatccacgccaa
aatttatccacttaagtaAGGTATTCaatcaagaaaaaatgaatTCTTAG
GCTTAACACCATTTTCGGACTGCTTTAAGGATGGCGAACCGAATCTACCG
CTTTTTGTTTTCACAATGcatattattttgaaatctaacgatggttttta
tttcaatcgggcgttttagatgggaaataagttaGTTAGTTTCAAACTAT
TGCCCCCTTTTCGAgcctttaaactcaatggtagaTAATGTTAACtataa
cattaaaataaaacgaTGTTggtatttcattttttagacATCCGGGGAAA
ATCTAAAGCATCAGTAACACAATATCAAaccaaatccaaaaagaaacCAA
CCAACAAACACATAACCATTTGCTAGTAGAAACCACTCCATCTCTTACGA
AGGCCAAATCATGGCAATGTTAGCAGCAAGTATCCAAgaactggtttcca
tcaagatcAAGCCAAGACATGATGGAATCACTGATCAATACAATCGTATT
TTCATGGTCAAGATATGTTTGATTTGCGCTGCTATCATTGGTGTGAATTA
CTTCAGTGATAAAGTATCGTGTATTGTGGCAAATGGGAATGGTATGGATG
GTGCGTTTGTTGGAAGTGCTTGCTGGATTCAAggtacacgtcttttttta
taagtaagAGTGTCTATCCCTTAATCAAGCTTGCATTATCCTCAGCATTA
TATTGCTCTTAAACAATAGAgtcattgtttaggtaccaaaaactgagcca
gcatatgcttataaacagTAGATGAAAAAACATGTCCACGTTGTTTTATA
CAAGAACAAATTACATCGAGACAAAAAGTTTCGAGgttaagaaatttaaa
attgtaAGAGCATCtaaaggctttatggactctaaaatttgataaaaata
gtcacaaaattttgagaattagAAAACTTTCTAAGAATTTGGAGgttcca
aaacaaaaaatttgcaCATAATCCATTGCACCAAATATGTTCATTTATCA
TCTAAATTTCCACATCAACTATTTATAAATTCCCTTCATTTTATTTAGGA
TTCTACATTTTCGAGGAAATGAAGACTCGATTGGATCAATCAGGGTATTA
CGGTATCCCACGCAACATGGATTATGACGGCATCAATCCTCTCGGTCAAC
TTTGCACCACAAGTGATCGTGCATTGGACCCTGTAGAGCAATGTACTCCC
ATGGAGAAAGTGTTCTATCTTCAATACCAGTATATGCCATTCTTCGTTGC
ATCACTGGCTTTATTGTTTTACGTGCCTTATTTGGCGTTCACTTTCACCA
ACGCAGATCTGGTGTTGCTCAAGGATTACCTCAAGGCTGGAAGTGTAGAT
TCAGATGATTTGTTGAAGAAATTCTTTGATCAGAAAAAGAATCGACGTAA
AAAGATGAGATATCGTGTGTTCTCATTGTTGCTGGTCAAACTGATGTATC
TGCTGGTCAACGTTGTGGCGCTGTTAGCTTGCCACGTCCTGCTTCATCAC
AAATTTCTGACCTATGGTCGTGATTATCTGCAATGGACGGACTTGGATCA
CAATTTGGCACACGAGCACAATTTGAGAGAACGTCATAGTCCTAAACCAG
GAAATGCGTTACTTCCTCCCATGGGCCTTTGCGAGATCCATGAAGCATCG
CGCGACGTACGCAACACACATGTCAATCAACATAAGTTCATTTGTGAAGT
CTCGCCCCACGTGTTGTATCAATACGTCTTATTGGTCCTTTGGTTCGGCC
TTGTAATCGGCATCGTAGTCTCAGTCATCGGTGTCCTAATGAATCTCTTT
GGACATCTCCTCAATTTTGCCTGCTTCATGAGCTCATCCGACCCTGCACG
CCGTATGTACCGCGCGATCACGTTGAGAGAGATTGATTATCTGGAGTATA
TACGCCGTAACAACATGCCGATCTACGTGGAGCTTCTACGTAAGATCAGA
GATGCCAGATCTATCACTTTTAAAGGCAAAGAGAAATACGGATACACCGG
TGTTGAACTTTAAATGATGAAAAACTTTCTTGGATTTTCGTCTTGTCTCA
TGTCAATCTTTCAATGATATGTGGACACCCTCTTAAAAGAATTCCGTGAA
CTTCCTGTATAGACCAAAAGCTAACTAAGTTAATTTTTGGTTATAATTTG
GAGATTACCTCCATGGTTCGTCCAATCCTGTGATTAATCTTATGATTTCA
ATTTGTTTGGCTGATTGTACAGCTTTGGTAATTCTTTACTAAGTCAATAG
CCTCGTGAAATTAATTTGTTTTGCTATCGACTACAGTACCTAAAAAGAAT
TTATCCTCAAATACCATTTTTCACATCCCAAAGACTATCATAAGAACTTT
TTTCAGATGTAACGTATTTcagtttttatgaaaaaaaaagtcaaaattct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011079-exon-sc0000121-1491911889:137022..137421 | TCONS_00011079-exon-sc0000121-1491911889:137022..137421 | Clytia hemisphaerica | exon |
| TCONS_00011079-exon-sc0000121-1510915933:137022..137421 | TCONS_00011079-exon-sc0000121-1510915933:137022..137421 | Clytia hemisphaerica | exon |
| TCONS_00011079-exon-sc0000121-1575043694:137022..137421 | TCONS_00011079-exon-sc0000121-1575043694:137022..137421 | Clytia hemisphaerica | exon |
| TCONS_00011079-exon-sc0000121-1491911889:139009..139354 | TCONS_00011079-exon-sc0000121-1491911889:139009..139354 | Clytia hemisphaerica | exon |
| TCONS_00011079-exon-sc0000121-1510915933:139009..139354 | TCONS_00011079-exon-sc0000121-1510915933:139009..139354 | Clytia hemisphaerica | exon |
| TCONS_00011079-exon-sc0000121-1575043694:139009..139354 | TCONS_00011079-exon-sc0000121-1575043694:139009..139354 | Clytia hemisphaerica | exon |
| TCONS_00011079-exon-sc0000121-1491911889:139770..141121 | TCONS_00011079-exon-sc0000121-1491911889:139770..141121 | Clytia hemisphaerica | exon |
| TCONS_00011079-exon-sc0000121-1510915933:139770..141121 | TCONS_00011079-exon-sc0000121-1510915933:139770..141121 | Clytia hemisphaerica | exon |
| TCONS_00011079-exon-sc0000121-1575043694:139770..141121 | TCONS_00011079-exon-sc0000121-1575043694:139770..141121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000121 | supercontig | sc0000121:137022..141121 + |
Blast
The following BLAST results are available for this feature:
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