TCONS_00011120 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011120
Unique NameTCONS_00011120
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011120 ID=TCONS_00011120|Name=TCONS_00011120|organism=Clytia hemisphaerica|type=transcript|length=2094bp
ACAAAATTGgactttatcaaaataattcttagatcaacaaaaaaaataat
aacttacCTCTTCATTTGGGCTTAGAAACAGCAGTTTTGATTCCATTTTA
GATGATAGaagagtcaagagtcaagacGTCCAGTagaaaagtgataaaaa
aattgCCCGCTACCTccagccattttgaaaatttgtattttagcGCGGAA
TAGTTTCTAACTTTCTCTATGTGCACAGCCGACCGGCTCCGATTGTCTGA
TAATTTCAACTAGATTAGAAACACGAAGACGAGTGTACATAATACtaatg
aaaacgaaagtaaacaGCCAAgcggaaaattttttcaaagtgatTCAGCA
CAGTCAGAAAAAGCAAAGCATATTAAACTGGCTGTAGATTTTCCCCAAGA
TTAAGTACAGAAGATGTCTATTCAAGCTGTTATTCAAGATTACATCTCAG
AAGATGACTTTAGGAGATTTGAAGACAAATATACAACAGAGAAGAGGAAC
AACATTCTGAGTGATACCACAACATTTGAATACTCATGGTGTCTCATTCG
TTCACAATATAAAGAAGACATCCGGAAAGGAGTTGCTTTACTAGAAGGAT
TGTGCTCAAGTAAAACAGATCAAAgggattatttattctttattgcAATC
GGACATTACAAATTAGCAgAATACAATATGGCATTGAAACATGTCAAACG
TCTACTCGCTATCGAACCTAAAAACCATCAAGCAAAAGATTTAGAACAGC
TTATCCACACTAAATTAAAATCAGaCGGTCTTCTTGGCATGGCGATGGTT
GGAGGAGCCACTTTAGTAGCAGCTGGTGCTGTTCTCCTTGGATTTGCCGT
CACCAAGAAGTGATGAGTGATCGATTGTTATGTTATGTTCGGTGCCGTGA
TAATGGTAATCAAGTCGATCGGTTTCCATGGAGGAATTGATTGTTGGTGG
GTTCCcatattatattgtttgaacACCTCCAACAGAAAGATTTCATTCTT
CTACATTCTTTTTACATactgaataactttttattggTGTTGTTAAGTTT
TAGCAAATCTTGAAAGTAAATATTGGTGGTATTGTAAATAAAAGTTAGTT
GAAAACGTAGCGAGAATTAATTTGTTTgaattgaatgaatttttttagat
AGGTTAGGTTGAACTTTATCATATCTCTTTAAAATATCTCTTccataaaa
aataccaaataacAGTAACAGTACTAACTtgagattttcaaaagaaaaca
caatAAAGTGGCGGtttattagcgaggttaagcacgggtttattttgacc
gtaaagtgcgatacgatgcgtaggcctgtacataacttgccaaagcaaac
catgcaaTGAAACCTTATGTACAGGCttacggtatcgcactttacggtca
aaataaacccgtgcttaacctcgctaatgaACCGCCACTTTATTGTGTTT
GTGGAAAGAGTTTTCGAGGAGACTTTTTTATTCCCTATAGTATCTGAGCT
GGATAAAAAGTAACTTCTTTTTgtacatacaaagtttctagaAATGTCGC
ATGGTTGACTGTCTAAATTTTAAAGTTCGTTTCAAAAAGTCTCTTGCCTC
ATGAatcgaatttttttaattctgttgAATTCGAGAATGTTTAATTATTA
ATGAAATTACTATATTGAATACAGTAtcatacccctgtgtcacagacccg
ctgggacttcagccccactggaaaatttggcaaaaaattcgtccccggtg
ggaaaataccctgcaATTCCAGTCCTACTGgaaaatttactttgatttca
cccccattcgaaactcaatgtttaaaaaatggcactcccaaaaccatccc
actggattttttaaccttagaacaataagaatttctatccccactgagga
aaaaagttccaccggggctgtgagacaggggtgtagtatcatacaaatta
aatttatttttatatacatatttgtggaaaataaaatgacaatttttcga
aatttttgtaaatataccAAAACATCTTACCCAAATTATTCACTCCTAGA
TTCCCATTCCAACTTACAGTGTAACTTACTTTTAAAGCTTGATT
Run BLAST on NCBI

protein sequence of TCONS_00011120-protein

>TCONS_00011120-protein ID=TCONS_00011120-protein|Name=TCONS_00011120-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MSIQAVIQDYISEDDFRRFEDKYTTEKRNNILSDTTTFEYSWCLIRSQYK
EDIRKGVALLEGLCSSKTDQRDYLFFIAIGHYKLAEYNMALKHVKRLLAI
EPKNHQAKDLEQLIHTKLKSDGLLGMAMVGGATLVAAGAVLLGFAVTKK
Run BLAST on NCBI

transcript from alignment at sc0000121:46074..53629-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011120 ID=TCONS_00011120|Name=TCONS_00011120|organism=Clytia hemisphaerica|type=transcript|length=7556bp|location=Sequence derived from alignment at sc0000121:46074..53629- (Clytia hemisphaerica)
ACAAAATTGGACTTTATCAAAATAATTCTTAGATCAACAAAAAAAATAAT
AACTTACCTCTTCATTTGGGCTTAGAAACAGCAGTTTTGATTCCATTTTA
GATGATAGAAGAGTCAAGAGTCAAGACGTCCAGTAGAAAAGTGATAAAAA
AATTGCCCGCTACCTCCAGCCATTTTGAAAATTTGTATTTTAGCGCGGAA
TAGTTTCTAACTTTCTCTATGTGCACAGCCGACCGGCTCCGATTGTCTGA
TAATTTCAACTAGATTAGAAACACGAAGACGAGTGTACATAATACTAATG
AAAACGAAAGTAAACAGCCAAGCGGAAAATTTTTTCAAAGTGATTCAGCA
CAGTCAGAAAAAGCAAAGCATATTAAACTGGCTGTAGATTTTCCCCAAGA
TTAAGTACAGAAGATGTCTATTCAAGCTGTTATTCAAGATTACATCTCAG
AAGATGACTTTAGGGTAAGACTAAAATCTCTTTTTGCTTCTCAATGAATT
GCCAAGGGTAGAAAATAGAAGATAATGATTGTTTTGATTTCTTTTGTTTC
TTTGTTGTTGAATTGTCTTTCATATCAGCTTTTCGACTTTCTTTTCTATG
TATGCATGACTTTGATTGTGAAGTTCAAAATTCAGAATGGGATGGATCCA
AAACAGTTACCTTGCGATCGGGTAACTTGCATCAGTGGACAGTCTGGGAA
ATCCTCTCAATTGCATGCTTATGTTCCGAGGCCGTAAGCGCGCAATTGCA
CGGTTATCAAAATGGCAGAATTTTTAAGCTTGTAATTACACGCTTATCAA
AATTGTTCTGAAACGGGCGGTAAGCGGTAAGCGTGCAATTGCACCCTTTA
TTATTCTGAGACGCAATTCCTTCCGAAAGCTCTGTTGAATTTCAAAACCC
TAGGGCAGTTTTACTTAAAATTTATCGTAGAAGAAGATTCCGTAAAAATG
GATTGCCCGTTAAACCATGCCTTTGCCCAAATTAGAGAATTCTGAACCCC
TTGAAGAAATCCCTAACCAATTTCAACCGGGGCGGGATCGGGTGTAAATT
ATAACCATGCAATAGACCTTTTCGCCTTTGCGTCCGCCATATTGAATTGC
CATTAAGAAATTCCACGAAGACGGAGTACACACATCAAACTTTCAAAACA
CGCAAACTGAAAGCAGTAATTATCACGTCACACTTTATCAATGTTTTGAT
TTGATCATTTGGCGGCTCTATTCCCAGGAGAATAATTTGCCGTCAGCCGA
ATAAGGATTGTTTTTTACCTTCGCGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTTGCATACTTTCTAAGGGAATTTCACCACGGCA
ATTCGGCAACCATAATTTTTGCATACAATTCAATATGGCGGACGCAAAGG
CGAAAAGGTCTATTGCGCTCTTACGCCCTCGGAACATAATCGTGCAATTG
AGAGGATTTCCCAGACTGGTGGAGGTTAACATGCATAGCCCTCAAACAGT
TGGGTGTTTAAGATAAAAACGGCAATTTTTTCAACGATGAAATGTTGAAT
CAGCAGAAAAAAAATATAAGGCGGCAATCAAAAATATGTTCCATTCGGGT
CCTAATACATCTTCAAATCCAGTCGGTCGGTCGGTTATGATAAATTATGT
CAGATTTTTAAGATCTAGTAAATCCCAATTAATCAAGTCGGCAATCAACA
GAATCTTATGCCGCCTTTTTTAATTTGACAAACTAAATGTGCGCACGCAT
GTGTTAACCTTGTTAAAGTGGCCCTTATTTTCGGCCCCCAGGGTATTGGC
CCTACCGCATTGCTGAATTTTGACATGAAAATTTCAATAAGGGTACATGA
AAAAACTTGAACGGGACTCAATGTGGGTTTAGTAAACAAAATATAATGAT
TCAAAGACATGCTCCGTTCGCCCGTGCCCGCCATTATTGGAAAGATCCGA
ACCTGCGAACATTGCCCAAAAAAACCGACGATTTTACCGACTTTCCAAAT
CAGGTTTTCTTGTAAATAAACAGTCGGTTGGACGACCCAAACGCAACATA
TTTTTGATTGCCGCCAAAAAGTAAACAAATGAAAAGTGCCGTTTTTGGCC
ATTATTGCCGTTTTTGGAAAGTAAAGTTAATTTTATTATTGAACACGTGG
TATTTGACACTCTCGCAATAAATAGGCGCACTGTGCCTTGTTCGGTTTTT
GTCGGAAATACAGATAGCAAAATCGAGTCATATTGTAAAGAAACTTACGA
CAGGGGTTTTGTTTTTCTTTCTGGCTGTGTTTCGGCATCGATGCAGGATC
TTTTTACATATTATTTTAGAACTTTGAAAAAAAATCACTTTTAAAAATCC
AAGAAACCTTTTTCTAGATGCAATTTTACAATTTTCAAACACCTTTGACA
TCTTTACCCTTATAAAGACAACATATTTTGCGGACTCAGCATTTCATCGT
TGAAAAAATTGCCGTTTTCGGCAATAATTATGGAAAAGAGCAATAATTGC
CGTTTTTATCTTAAACACCCAACTGTCCTGGCTAGTCATTAAAATACAAA
GTTAAATCAAAACAAAAATGGTAGTGTAGAGCTGCGTAGATAGTTTGTTT
TGAAATTTTGCTGTTTTAACTGGTCAGCCATTTGATGGCTATGCAAGTTT
CCCTCCACTGATGCAAGTTTCCTGACTTCACGATATTTGCAGACACGATT
CACAATATTTAAGCCAATGAACCAATTCTGCCCTAAAATAGGTTGAAGCT
GGTTAATTTTGTGTCAAGACATTTCAAATTAATGATATTGTTTCAGACCT
CAAATTTCTGAAGGGCAACTGGCTAATATTTAGCCAAGTTCTTCATTTGT
ATATTTTTTTGTATATTGTATATTTAAAAAAAAATTAAAAATGCCAAAAA
AAATCGTAAATATACATAATAATTAACAAAAATATTCTTCACTTTTTATC
GTTTTTATCAGTTTGAGTTATTTATATATCAATACTTTTCTTTTTCTACA
ATGACAGATATTACATATCTTCACTATATTATATGTCTTCAGGAAGCCAG
CAATTCTTGAAAGAAAGATTATTTGAGGACAATAATCCAAACCAAATTCT
TAAGGGAACCTAAAAACATGAAAAGCAAAACTGTTCTGAAACACTGTGTG
AATGTCAACATTTGAAATGTCAAAAAAAAGAACGTTATACTGGGTGTGTC
ACAAATAAGTTTCTCTCTTTTAAAGTGAATTTGCTCAAGGTCTAAAAACT
TAGAAATAACCAATTCTTTTTCATTGGAAAGAAAAAAGATAAACTTAAAT
TTTAATGATTCATTTATAAAATTTGGTTCATTAGATCAACAGTTATGCTC
AATTTAATAAAAAAATTACTTTTAGAAAATGTGCAAAATGTAAAAATCTA
CCTATCAGATTTTTCGATAACAAATTTGATAACAAATCTGTGGCTGCAGT
CACAAGCCTCTCTTGACTAGATGATGAAATCCAGTTATTGACAAAGAAAG
TTTTAGGAGGCAAATGAGTATTGAATTGTAAATATGTATGCCAGGGCGGG
GGACCAGGGACATGGTCCCCTCACTCTTTTTAAAATAAAAAGTTATTTTT
AAAATATCACAATTACTTTCAATGGCTTCATTTCTGTGCAAAATCAGTTT
GGGGCCATTTTAAGACATATTATAATATTAGGGAGTCAAAATTAGAATTT
TCAACCCTCAGCACAAACTATGGTCCTTAGTTACAGTACAATATTTTTGA
CCATTCCATGTCATGAACCCTGTTTTATCTTATTCTCAAAGTGGTTGCAC
TACCCGTACCACTGGAATATCCAATTTTTTGTGACTTTCTATTTCCGGTG
AAAGCAATCCTTATCAGTGTATATACTTTTCATCCTGATTGGCAAAGCTT
CCTTCAACATATATCTATATTTAATAAGAAGAACGCAATGCTGTTGAATG
TCAAAATTAAATTGAGAGTGATTTTGTAAGTCACCAATGCGTTTTTTTAG
AGATTTGAAGACAAATATACAACAGAGAAGAGGAACAACATTCTGAGTGA
TACCACAACATTTGAATACTCATGGTGTCTCATTCGTTCACAATATAAAG
AAGACATCCGGAAAGGAGTTGCTTTACTAGAAGGTAAAACTTACAGATAA
TTTGAAACTCTTTCATCCTCCAGAGTGGTACTCAGAATGTCAAAATCTAC
CCTTTATTTAAGTGGGTCTTAGAAAGACAGATTTTTAGTTGTTTTTGGTA
GGGCTTGAAAATTTATAATCCTAAATTCATTCTTCTCTTCAGGATTGTGC
TCAAGTAAAACAGATCAAAGGGATTATTTATTCTTTATTGCAATCGGACA
TTACAAATTAGCAGTAAGTATGAATATTTCTGTTAATTGATTTCAAGGTT
TGATTGAACGGATTGAAACCCATTGCAAATAATGCTTTTTCTAAAATACT
TATCCTATTTCTAAAATACTTTCAATTTAGTCTACAAGAACATTTCTCTG
TTGTCTCGATGTTTCAAAATCCTTGTTTATTTTCCAAGAAACAACTTTCC
GTGTATATATCTTAAATAAAAAGATAATATCATGAAGTGTCATGTATAAC
AGTAACCTTAATATTACGCCATTGTTTTTTATCTTCAGGAATACAATATG
GCATTGAAACATGTCAAACGTCTACTCGCTATCGAACCTAAAAACCATCA
AGCAAAAGATTTAGAACAGCTTATCCACACTAAATTAAAATCAGGTTTGT
TATAAGTTACTGCTACAAAGTTTAGTGCTTTTTCGGGTGAGTCATTGTTG
CTCTTGCTCGATCAAATTATCATGATTAAGAAAATACCAAGGAATAAATT
CACACACAATTTACACCATTATGTTGATGTCGAAAGGGTGTCGAAAAGAC
GATTGCTGTTCAAAAAAGGCTGTTTTGATGCTTTTTTATTCATCACATGG
AATTGGTCGGGCTATATGAGTCTCATTTACCAGCTATTAAACACCGCTAC
TTCTCAAATTTAGGTATATCGTATCTGTCTTTTAAGTCTATCAACCAACT
ACAATTTTGCTTTCTAGATAGTGGCGACTCTTAATTTTAACGTTTATAAA
GCACGTATTGTATTTTTCGTAATTCGTTTTTTTCAGACGGTCTTCTTGGC
ATGGCGATGGTTGGAGGAGCCACTTTAGTAGCAGCTGGTGCTGTTCTCCT
TGGATTTGCCGTCACCAAGAAGTGATGAGTGATCGATTGTTATGTTATGT
TCGGTGCCGTGATAATGGTAATCAAGTCGATCGGTTTCCATGGAGGAATT
GATTGTTGGTGGGTTCCCATATTATATTGTTTGAACACCTCCAACAGAAA
GATTTCATTCTTCTACATTCTTTTTACATACTGAATAACTTTTTATTGGT
GTTGTTAAGTTTTAGCAAATCTTGAAAGTAAATATTGGTGGTATTGTAAA
TAAAAGTTAGTTGAAAACGTAGCGAGAATTAATTTGTTTGAATTGAATGA
ATTTTTTTAGATAGGTTAGGTTGAACTTTATCATATCTCTTTAAAATATC
TCTTCCATAAAAAATACCAAATAACAGTAACAGTACTAACTTGAGATTTT
CAAAAGAAAACACAATAAAGTGGCGGTTTATTAGCGAGGTTAAGCACGGG
TTTATTTTGACCGTAAAGTGCGATACGATGCGTAGGCCTGTACATAACTT
GCCAAAGCAAACCATGCAATGAAACCTTATGTACAGGCTTACGGTATCGC
ACTTTACGGTCAAAATAAACCCGTGCTTAACCTCGCTAATGAACCGCCAC
TTTATTGTGTTTGTGGAAAGAGTTTTCGAGGAGACTTTTTTATTCCCTAT
AGTATCTGAGCTGGATAAAAAGTAACTTCTTTTTGTACATACAAAGTTTC
TAGAAATGTCGCATGGTTGACTGTCTAAATTTTAAAGTTCGTTTCAAAAA
GTCTCTTGCCTCATGAATCGAATTTTTTTAATTCTGTTGAATTCGAGAAT
GTTTAATTATTAATGAAATTACTATATTGAATACAGTATCATACCCCTGT
GTCACAGACCCGCTGGGACTTCAGCCCCACTGGAAAATTTGGCAAAAAAT
TCGTCCCCGGTGGGAAAATACCCTGCAATTCCAGTCCTACTGGAAAATTT
ACTTTGATTTCACCCCCATTCGAAACTCAATGTTTAAAAAATGGCACTCC
CAAAACCATCCCACTGGATTTTTTAACCTTAGAACAATAAGAATTTCTAT
CCCCACTGAGGAAAAAAGTTCCACCGGGGCTGTGAGACAGGGGTGTAGTA
TCATACAAATTAAATTTATTTTTATATACATATTTGTGGAAAATAAAATG
ACAATTTTTCGAAATTTTTGTAAATATACCAAAACATCTTACCCAAATTA
TTCACTCCTAGATTCCCATTCCAACTTACAGTGTAACTTACTTTTAAAGC
TTGATT

Coding sequence (CDS) from alignment at sc0000121:46074..53629-

>TCONS_00011120 ID=TCONS_00011120|Name=TCONS_00011120|organism=Clytia hemisphaerica|type=CDS|length=2250bp|location=Sequence derived from alignment at sc0000121:46074..53629- (Clytia hemisphaerica)
ACGGTCTTCTTGGCATGGCGATGGTTGGAGGAGCCACTTTAGTAGCAGCT
GGTGCTGTTCTCCTTGGATTTGCCGTCACCAAGAAGTGAGAATACAATAT
GGCATTGAAACATGTCAAACGTCTACTCGCTATCGAACCTAAAAACCATC
AAGCAAAAGATTTAGAACAGCTTATCCACACTAAATTAAAATCAGGATTG
TGCTCAAGTAAAACAGATCAAAGGGATTATTTATTCTTTATTGCAATCGG
ACATTACAAATTAGCAAGATTTGAAGACAAATATACAACAGAGAAGAGGA
ACAACATTCTGAGTGATACCACAACATTTGAATACTCATGGTGTCTCATT
CGTTCACAATATAAAGAAGACATCCGGAAAGGAGTTGCTTTACTAGAAGA
TGTCTATTCAAGCTGTTATTCAAGATTACATCTCAGAAGATGACTTTAGG
ACGGTCTTCTTGGCATGGCGATGGTTGGAGGAGCCACTTTAGTAGCAGCT
GGTGCTGTTCTCCTTGGATTTGCCGTCACCAAGAAGTGAGAATACAATAT
GGCATTGAAACATGTCAAACGTCTACTCGCTATCGAACCTAAAAACCATC
AAGCAAAAGATTTAGAACAGCTTATCCACACTAAATTAAAATCAGGATTG
TGCTCAAGTAAAACAGATCAAAGGGATTATTTATTCTTTATTGCAATCGG
ACATTACAAATTAGCAAGATTTGAAGACAAATATACAACAGAGAAGAGGA
ACAACATTCTGAGTGATACCACAACATTTGAATACTCATGGTGTCTCATT
CGTTCACAATATAAAGAAGACATCCGGAAAGGAGTTGCTTTACTAGAAGA
TGTCTATTCAAGCTGTTATTCAAGATTACATCTCAGAAGATGACTTTAGG
ACGGTCTTCTTGGCATGGCGATGGTTGGAGGAGCCACTTTAGTAGCAGCT
GGTGCTGTTCTCCTTGGATTTGCCGTCACCAAGAAGTGAGAATACAATAT
GGCATTGAAACATGTCAAACGTCTACTCGCTATCGAACCTAAAAACCATC
AAGCAAAAGATTTAGAACAGCTTATCCACACTAAATTAAAATCAGGATTG
TGCTCAAGTAAAACAGATCAAAGGGATTATTTATTCTTTATTGCAATCGG
ACATTACAAATTAGCAAGATTTGAAGACAAATATACAACAGAGAAGAGGA
ACAACATTCTGAGTGATACCACAACATTTGAATACTCATGGTGTCTCATT
CGTTCACAATATAAAGAAGACATCCGGAAAGGAGTTGCTTTACTAGAAGA
TGTCTATTCAAGCTGTTATTCAAGATTACATCTCAGAAGATGACTTTAGG
ACGGTCTTCTTGGCATGGCGATGGTTGGAGGAGCCACTTTAGTAGCAGCT
GGTGCTGTTCTCCTTGGATTTGCCGTCACCAAGAAGTGAGAATACAATAT
GGCATTGAAACATGTCAAACGTCTACTCGCTATCGAACCTAAAAACCATC
AAGCAAAAGATTTAGAACAGCTTATCCACACTAAATTAAAATCAGGATTG
TGCTCAAGTAAAACAGATCAAAGGGATTATTTATTCTTTATTGCAATCGG
ACATTACAAATTAGCAAGATTTGAAGACAAATATACAACAGAGAAGAGGA
ACAACATTCTGAGTGATACCACAACATTTGAATACTCATGGTGTCTCATT
CGTTCACAATATAAAGAAGACATCCGGAAAGGAGTTGCTTTACTAGAAGA
TGTCTATTCAAGCTGTTATTCAAGATTACATCTCAGAAGATGACTTTAGG
ACGGTCTTCTTGGCATGGCGATGGTTGGAGGAGCCACTTTAGTAGCAGCT
GGTGCTGTTCTCCTTGGATTTGCCGTCACCAAGAAGTGAGAATACAATAT
GGCATTGAAACATGTCAAACGTCTACTCGCTATCGAACCTAAAAACCATC
AAGCAAAAGATTTAGAACAGCTTATCCACACTAAATTAAAATCAGGATTG
TGCTCAAGTAAAACAGATCAAAGGGATTATTTATTCTTTATTGCAATCGG
ACATTACAAATTAGCAAGATTTGAAGACAAATATACAACAGAGAAGAGGA
ACAACATTCTGAGTGATACCACAACATTTGAATACTCATGGTGTCTCATT
CGTTCACAATATAAAGAAGACATCCGGAAAGGAGTTGCTTTACTAGAAGA
TGTCTATTCAAGCTGTTATTCAAGATTACATCTCAGAAGATGACTTTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006227XLOC_006227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011120-exon-sc0000121-1575043694:53166..53629TCONS_00011120-exon-sc0000121-1575043694:53166..53629Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1575043694:48397..48529TCONS_00011120-exon-sc0000121-1575043694:48397..48529Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1575043694:48167..48237TCONS_00011120-exon-sc0000121-1575043694:48167..48237Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1575043694:47786..47891TCONS_00011120-exon-sc0000121-1575043694:47786..47891Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1575043694:46074..47393TCONS_00011120-exon-sc0000121-1575043694:46074..47393Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1510915933:53166..53629TCONS_00011120-exon-sc0000121-1510915933:53166..53629Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1510915933:48397..48529TCONS_00011120-exon-sc0000121-1510915933:48397..48529Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1510915933:48167..48237TCONS_00011120-exon-sc0000121-1510915933:48167..48237Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1510915933:47786..47891TCONS_00011120-exon-sc0000121-1510915933:47786..47891Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1510915933:46074..47393TCONS_00011120-exon-sc0000121-1510915933:46074..47393Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1491911889:53166..53629TCONS_00011120-exon-sc0000121-1491911889:53166..53629Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1491911889:48397..48529TCONS_00011120-exon-sc0000121-1491911889:48397..48529Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1491911889:48167..48237TCONS_00011120-exon-sc0000121-1491911889:48167..48237Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1491911889:47786..47891TCONS_00011120-exon-sc0000121-1491911889:47786..47891Clytia hemisphaericaexon
TCONS_00011120-exon-sc0000121-1491911889:46074..47393TCONS_00011120-exon-sc0000121-1491911889:46074..47393Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011120-proteinTCONS_00011120-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000121supercontigsc0000121:46074..53629 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3747	10.7661	24.8928	28.5849	8.03259	6.02042	10.3953	10.6289	11.5671	10.9769	12.1751	7.42238	10.1577	8.39958	9.5831	9.49217	7.61584	9.32184	9.20161	12.6989	10.2818	8.57009	9.59353	9.72311	21.9232	19.7937	13.6141	11.6577	11.5749	11.5388
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028061Fis1_TPR_C
IPR028058Fis1_TPR_N
IPR011990TPR-like_helical_dom
IPR016543Fis1
IPR019734TPR_repeat
IPR033745Fis1_cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0000266mitochondrial fission
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000266 mitochondrial fission
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00011120 vs. Swiss-Prot (Human)
Match: FIS1 (Mitochondrial fission 1 protein OS=Homo sapiens GN=FIS1 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 6.669e-35
Identity = 62/124 (50.00%), Postives = 93/124 (75.00%), Query Frame = 3 
Query:  420 IQAVIQDYISEDDFRRFEDKYTTEKRNNILSDTTTFEYSWCLIRSQYKEDIRKGVALLEGLC--SSKTDQRDYLFFIAIGHYKLAEYNMALKHVKRLLAIEPKNHQAKDLEQLIHTKLKSDGLL 785
            ++AV+ + +S +D  +FE K+ +EK    +S +T FEY+WCL+RS+Y +DIRKG+ LLE L    SK +QRDY+F++A+G+Y+L EY  ALK+V+ LL  EP+N+QAK+LE+LI   +K DGL+
Sbjct:    1 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGLV 124
The following BLAST results are available for this feature:
BLAST of TCONS_00011120 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FIS16.669e-3550.00Mitochondrial fission 1 protein OS=Homo sapiens GN... [more]
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