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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010721 ID=TCONS_00010721|Name=TCONS_00010721|organism=Clytia hemisphaerica|type=transcript|length=1075bp
CGTGACTTTGTTGACTCCCATTCGACTCGATCGGCATTTacagactggat
ggcgcgataaAAGTGCATCGTGTATGAGTAAGAAGAAGGATTCCGAACAG
AACGCATCAGAAGTCGCTTTGACTTTCTTGACCAGCGGCCAACAAGCAAA
TGGAGAACAAAATGGAAAGACAGCTGATGaTGTTGCAGATATGATCAAAA
GTGCTCGCGTAGGTTCAAACGTCATGAATTTATCCTTGAAAAATCGTTTA
CAAGAGTATTGCCAACGTTTGAAGAAAGAACTACCCACCTATAAATCTGA
ATTGGGAGATAATGGTTTCTTTATGACCGTCTGTACCGTTGATGAGATCG
CCTACGAAGGTGGACCGGCCAAAACGCGAAAAGAAGCAGAGAAAAATGCA
GCGGAGGCAGCTCTTAAAGAACTCGGGTTAATGGCTGTTCGAGAACAATA
AATAGAGAATGGGTGACTACATTTCAGGGATAGGATATGGAGAATTTTTA
AACGGTGAACGGGTCGAAGCGGAGCACGACCGGCAgtgtgttttcaaaaa
tatactttatATCAGAAACTATGACAGCGTTATCGGACATGACTTTCAGT
TATACATACAATTACTTTGATGATGTGTATTTGATAAAGTGTACAGTTTA
CTGATTTGAACAATATCCGCCAGATTTCATTTTCCATGATGGTTTTTATT
TGATGTATCTGATAtacggggaaaattttcgtcggggaaaagtgacgaaa
ttttggccaagtgacgaatatttttccccgacgaaagtTTTCGCTGGCCT
TAATGCgcttaccaactaccagcaagtgacgaatatttttcctcgacgta
aattttccccgacgaaaattttccccgacgaaattttccccgataaggta
tgtgcTGAAATATGATAAATGTAAATGTTATTCATAATGTATAAAGTTCA
CGATTCTTTATGACAAAACATTTTATTTCGATGCgattttattttccatt
ttatgagtagagtattattttttttaaaggttttaaatagAACATGACAT
GATTATAAtcaaaagtctaaaaata Run BLAST on NCBI transcript from alignment at sc0000109:517167..525301+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010721 ID=TCONS_00010721|Name=TCONS_00010721|organism=Clytia hemisphaerica|type=transcript|length=8135bp|location=Sequence derived from alignment at sc0000109:517167..525301+ (Clytia hemisphaerica)
CGTGACTTTGTTGACTCCCATTCGACTCGATCGGCATTTacagactggat
ggcgcgataaAGTGACCCGGTattatatggtaatatgcttttgcttaggc
ggactgtaaaacagatttttagttgttttggaagataaaaacagtatgaa
gcaatgtttttatttggaaataagggattgcaaatctgttattgatgttt
gtttctcattttcgACTATACCTTTcgactccaagtagttttaatattat
ttggatttttaacattttctctcaaaatggcgacctcgacAAACGCTCCT
AGTGTAGACTTCACTGTaattcactggactcagcgtcataaaaaattatc
aaaaagcaaagttcagccaaaagtagactctagtcaaCCTCCACTGTTAG
TTCTCAAAGAAGTCTTTTGGGAGGAAGTAAAGATGGCAATTATAAACTAA
TGTGTTGTAGATTGTCAAGTGATTATTGTCAGGCGATCACATGCaaacac
aggttgcaaaataaaagtctgaagacaaatcacgcttttactcgaaattc
tTATgggcttgttacatgacatttatttctgattggttcgaatttattga
cactaatagaGTTATTGACTGTAAGTTGTAAaacaagtaacatgggaata
aaatagcgaactttttcgagtaatcacatattTTGACTGCATTGGTATAA
TTTTACAACCCGTGTATTCATATCTTCAAAACCCTTAAACTACGaaatca
taaaaattctctCGTATGTTTTTTCAGAGTGCATCGTGTATGAGTAAGAA
GAAGGATTCCGAACAGAACGCATCAGAAGTCGCTTTGACTTTCTTGACCA
GCGGCCAACAAGCAAATGGAGAACAAAATGGAAAGACAGCTGATGGTAAG
AATGATCGATAGTTGATTGTATTGATGAATCGATTGAAATTCTAATGGTT
TATAAAATTCTTTGAGATATTTCGATTGATAGTCAGCTGTAGTAAAGGCC
GCTATGTCTTCCCGTGTACAggagcttgtgcaaagggattttatgattaa
ttcaccaatgacgtcagtttccattgCNTTTCAACTTTACCGCCGAAGCT
GCTACAGACACTCCTAAAGATGCAGACCTTAGAGCTGCATTTACAGCGCT
CAAAGGGTTAGGATATTTCAACACAGATATGGTTTATACTGCAGCCACCT
TTACAAACACTGGTAAGAAGAAAATATCAAAGTCTAAGTATATTTGACTT
AACATAACATCTAGTGTGGCTCCGCATCAATAACGGGGTTGTATTTTCCG
AAAATGATTGCGATGGTGTCGTCATTGGAAAAAAGATATGTGTGAATATA
AAGAAATCTATAAGAACttgaaaatgatgaagaaaaCTGAATTTCAActt
aaagtaaaaagtaaagtaAAATTATGAAAGAGCACCCCACTCAAGAAACT
TAAAAGAGATTAATAAAGTTAAATCAAATTAAAGTTCCTTGCCCCAATCT
AATACTATTAAAGATGAAAATATTCATGTTTGCAGGCAAGAAACGGTCCA
GTGTTAGTGGTGAACCAGACAACTCTGCAGCAACAAAGAAAATGTGTTTC
GAGAAAAACTCAAAGTCGTTCAAAAGCCGACTTAACGAACTAGCGCAACA
GAACAAGTTGCAGCAACCAACGTATGAGACGATTAGCACGACAAATGGAT
TTTTCACAACAGTCACTTTCAACGGGCGGCAATTCAAGGTAAAAACCGTT
TTGAAACTACTGCTAGTATTTATCCAAACTATTAAGGTTGAGGCCTTGGA
GCTAGAAATTCTATCTAtgaggcttttccagaaaaaatctgaatatgagc
agggtggaggatataactttttttggaaatgtatggacattgtgactttt
gaccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNcccggaccttattaggacccccccccgtttattaatttttga
aaaaaattcccagctaccaaaaagaaagttccttgttttactctaaaaaa
cctaaatttagtctattttgaccctttttagggtttttaaggTCCacttt
ccaaccccccccgtttatttggcacctaagagtacaaaccttaaggcttc
actttttcttacttgggaaaggttgaagattcaaaTCTTGCTCTTCGAGC
TTCAACCTCAATGATCCAAATCATCACGCTAGACTGCAGGTGCTCAGTAT
CCCAATGAGTCAAATAAGGGAGTATTTGATTTACAAAAAGAAGAGAGTCG
AATAGCCtagggtccacttaaagctatttttataTCGTTCGTGACTTTGT
TGACTCCCATTCGACTCGATCGGCATTTACAGACTGGATGGCACGATAAA
GTGACCCGGTATTAtgtggtaatatgcttttgcttaggcggactgtaaaa
cagatttttagttgttttggaaggtaaaaacagtatgaagcaatgttttt
atttggaaataagggattgcaaatcctggcaaatctgttattgatgtttg
tttctcattttcgATTATACCTTTCAATTACAAGAAGGTTTAtagttatt
tggatttttaacattttctctcaaaatggcgacctcgacAAACGCTCCTA
GTGTAGACTTCACTGGaattcactggactcagcgtcataaaaaattatca
aaaagcaaagttcagccaaaagtagactctagtcaaCCTCCACTGTTACA
TTGTTAGTTCTCAAAGAAGTCTTTTGGGAGGAAGTAAAGATGGCAATTAT
AAACTAATGTGTTGTAGATTGTCAAGTGATTATTGTCAGGCGATCACATG
Caaacacaggttgcaaaataaaagtctgaagacaaatcacgcttttactc
gaaattctTATgggcttgttacatgacatttatttctgattggttcgaat
gtATTGACACTAATAGAGTTATTGACTGTAAGTTGTAAaacaagtaacat
gggaataaaatagcgaactttttcgagtaatcacatattTTGACTGCATT
GGTATAATTTTACAACCCGTGTATTCATATCTTCAAAACCCTTAAACTAC
GaaatcataaaaattctctCGTATGTTTTTTCAGAGTGCATCGTGTATGA
GTAAGAAGAAGGATTCCGAACAGAACGCATCAGAAGTCGCTTTGACTTTC
TTGACCAGCGGCCAACAAGCAAATGGAGAACAAAATGGAAAGACAGCTGA
TGGTAAGAATGATCGATAGTTGATTGTATTGATGAATCGATTGAAATTCT
AATGGTTTATAAAATTCTTTGAGATATTTCGATTGATAGTCAGCTGTAGT
AAAGGCCGCTATGTCTTCCCGTGTACAggagcttgtgcaaagggatttta
tgattaattcaccaatgacgtcagtttccattgCAACGGGTGGTCACACC
CGGTCACACCCGGCCTcgcctctcaaattttgatcttctacattcaagga
acaatattcaatcataaaatctctttgcacaagctgctgcacacgggaag
ctttttcgcgacatagtgctggggtgaaacaaggcatgtcccaaatatat
tttgcgtgacgcacaccgcttcccattattcattacctttcatatatagc
tcaaaagaatcgtatcaacgagaggatttcgaaaagtgctgggtcaaaaa
tttacatcaaggcaatctcaagatatcggccaaaaactgattttgacgtt
ataaaatacatcgaaaaaacacgtcaaaaagactatttaaatgacgtcat
tattgaagaaaggcgataattccgattaacttactacaatcaaagcaaaa
ttttgactggatTTAAATTaacgattttaaaatatttcatgaaaaaaaaa
tttgaaaattcatgatgacgtcagcattttttgacgtattttaatttttc
cggacaacaaatgacgtcattcaaattttctgaaattttttgaacaaata
tttcagaatcattaatttacaactccagtcaaaatttggtgttgattgca
ttaataaaatagatcttatcggagtttttgatttttctaaaaaagcgatg
cattgcgggattgtttcgggagtattacaatagaaatctcttaggaattc
ctcgagggaattctattgtaatacccccgaaacaatcccacaatgcattg
ctgttttagaaaaataaaaaaatccgataaggtctattgaagttatcgct
gtttttcaataatgacgttatttgaatcttacttatgacgtgtttttcga
tgtattttataacgtcaaaatcaatttttgaccgatatcttgagattggc
ttaatgcaaatttttgacccagcgcTTTTCGAAATCCGCTCGttgatatg
attcttttgagctatataattatgaacgttaaggaataattggaagcggt
gcgcgtcacgcaaaatatatttgggacatgccttgtttcacccgagtgGC
CCCTACTACTGATGCAGTACCTTaatacacgaatattactaggctgcaag
tattcaacggccttgaaatttgcatgatctgaaattaacacgaatttttc
tgctttttcaaagaaacagcggccggttttaattaagggggtttttatta
acatgaAATTTTTCACTTCGTGTttataaaatgactagtaatattcgtgt
aataaggtattctTAAATAGACACCTTGGTATCATCGGGTGCAAATGCAA
GTTTTTTTTACTGTTAACTAGTCGTTCAGATACATCAAAATATACTAGTA
CCTACCCACCGATACCGAAAGGTACCTGACAcgattttgccaaatttgaa
tGACGATAAATGTCTATTTCTTTGATCGCATTATCGCATGTCACGACTAA
AAACCATCTGACAGTATTTGATTCAGATGAACTTGTATCGGACAGGTTGA
TAGGTTGTTTTAACGTTACACTTTTTATTTCACGAGGCATTCTTAATCAG
TACTTATAGAAATATTGAACacatttttgtcaattctagaTGTTGCAGAT
ATGATCAAAAGTGCTCGCGTAGGTTCAAACGTCATGAATTTATCCTTGAA
AAATCGTTTACAAGAGTATTGCCAACGTTTGAAGAAAGAACTACCCACCT
ATAAATCTGAATTGGGAGATAATGGTTTCTTTATGACCGTCTGTACCGTT
GATGAGATCGCCTACGAAGGTGGACCGGCCAAAACGCGAAAAGAAGCAGA
GAAAAATGCAGCGGAGGCAGCTCTTAAAGAACTCGGGTTAATGGCTGTTC
GAGAACAATAAATAGAGAATGGGTGACTACATTTCAGGGATAGGATATGG
AGAATTTTTAAACGGTGAACGGGTCGAAGCGGAGCACGACCGGCAgtgtg
ttttcaaaaatatactttatATCAGAAACTATGACAGCGTTATCGGACAT
GACTTTCAGTTATACATACAATTACTTTGATGATGTGTATTTGATAAAGT
GTACAGTTTACTGATTTGAACAATATCCGCCAGATTTCATTTTCCATGAT
GGTTTTTATTTGATGTATCTGATAtacggggaaaattttcgtcggggaaa
agtgacgaaattttggccaagtgacgaatatttttccccgacgaaagtTT
TCGCTGGCCTTAATGCgcttaccaactaccagcaagtgacgaatattttt
cctcgacgtaaattttccccgacgaaaattttccccgacgaaattttccc
cgataaggtatgtgcTGAAATATGATAAATGTAAATGTTATTCATAATGT
ATAAAGTTCACGATTCTTTATGACAAAACATTTTATTTCGATGCgatttt
attttccattttatgagtagagtattattttttttaaaggttttaaatag
AACATGACATGATTATAAtcaaaagtctaaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010721-exon-sc0000109-1491911889:517167..517227 | TCONS_00010721-exon-sc0000109-1491911889:517167..517227 | Clytia hemisphaerica | exon |
| TCONS_00010721-exon-sc0000109-1510915933:517167..517227 | TCONS_00010721-exon-sc0000109-1510915933:517167..517227 | Clytia hemisphaerica | exon |
| TCONS_00010721-exon-sc0000109-1575043694:517167..517227 | TCONS_00010721-exon-sc0000109-1575043694:517167..517227 | Clytia hemisphaerica | exon |
| TCONS_00010721-exon-sc0000109-1491911889:517944..518061 | TCONS_00010721-exon-sc0000109-1491911889:517944..518061 | Clytia hemisphaerica | exon |
| TCONS_00010721-exon-sc0000109-1510915933:517944..518061 | TCONS_00010721-exon-sc0000109-1510915933:517944..518061 | Clytia hemisphaerica | exon |
| TCONS_00010721-exon-sc0000109-1575043694:517944..518061 | TCONS_00010721-exon-sc0000109-1575043694:517944..518061 | Clytia hemisphaerica | exon |
| TCONS_00010721-exon-sc0000109-1491911889:524406..525301 | TCONS_00010721-exon-sc0000109-1491911889:524406..525301 | Clytia hemisphaerica | exon |
| TCONS_00010721-exon-sc0000109-1510915933:524406..525301 | TCONS_00010721-exon-sc0000109-1510915933:524406..525301 | Clytia hemisphaerica | exon |
| TCONS_00010721-exon-sc0000109-1575043694:524406..525301 | TCONS_00010721-exon-sc0000109-1575043694:524406..525301 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000109 | supercontig | sc0000109:517167..525301 + |
Blast
The following BLAST results are available for this feature:
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