TCONS_00001280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001280
Unique NameTCONS_00001280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001280 ID=TCONS_00001280|Name=TCONS_00001280|organism=Clytia hemisphaerica|type=transcript|length=376bp
TCAAAAAACATATTGCCAACAAAATATATCATCCTTGTGCTCTCTCAAAT
CTGTTTATATCATTTACAGTTGAATTTCAGTGTTGATCTTAGGGAAACGT
CAGGTTGAACGTCAATCATGCATAGTTTTACTTAATTTTCCAGGATCGCC
TCTGCGCTCTGGCGCCATGACTCATGaaagactagatttccactggaCTT
AAGAATCATAatggatacatcattgaatgtGTTTGGTTCCTTGCTTaaaa
ctttattcaaagtcTATAATTcatcactttgaaaagtttttttcggtgTA
CAAGTTTTACTGTTCGAAAACATCAGTTCGCAGAATCAAATTGTTGCTTT
CACTCAAATCATAGGCTTCCAAAGNN
Run BLAST on NCBI

transcript from alignment at sc0000007:436423..436798

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001280 ID=TCONS_00001280|Name=TCONS_00001280|organism=Clytia hemisphaerica|type=transcript|length=376bp|location=Sequence derived from alignment at sc0000007:436423..436798 (Clytia hemisphaerica)
NNCTTTGGAAGCCTATGATTTGAGTGAAAGCAACAATTTGATTCTGCGAA
CTGATGTTTTCGAACAGTAAAACTTGTAcaccgaaaaaaacttttcaaag
tgatgAATTATAgactttgaataaagttttAAGCAAGGAACCAAACacat
tcaatgatgtatccatTATGATTCTTAAGtccagtggaaatctagtcttt
CATGAGTCATGGCGCCAGAGCGCAGAGGCGATCCTGGAAAATTAAGTAAA
ACTATGCATGATTGACGTTCAACCTGACGTTTCCCTAAGATCAACACTGA
AATTCAACTGTAAATGATATAAACAGATTTGAGAGAGCACAAGGATGATA
TATTTTGTTGGCAATATGTTTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000684XLOC_000684Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001280-exon-sc0000007-1491911889:436423..436798TCONS_00001280-exon-sc0000007-1491911889:436423..436798Clytia hemisphaericaexon
TCONS_00001280-exon-sc0000007-1510915933:436423..436798TCONS_00001280-exon-sc0000007-1510915933:436423..436798Clytia hemisphaericaexon
TCONS_00001280-exon-sc0000007-1575043694:436423..436798TCONS_00001280-exon-sc0000007-1575043694:436423..436798Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:436423..436798 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.38715	6.73608	2.80539	2.92185	51.2284	38.2503	39.539	51.3345	13.4653	19.8615	14.3096	13.441	10.6081	8.38786	5.81615	8.81836	4.93832	6.92972	8.73727	10.9691	5.30257	5.97412	5.30673	6.93823	12.19	14.8898	15.2951	5.12519	10.9813	6.40936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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