TCONS_00010749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010749
Unique NameTCONS_00010749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010749 ID=TCONS_00010749|Name=TCONS_00010749|organism=Clytia hemisphaerica|type=transcript|length=469bp
TGCGTATTGCAACAATAGCTAAGTCATATTTGGCTAACAAGTTCACTTTT
TTATTTAAGGATTATCACAAGGAACTTACGAACGCTATCAAGGATATCGA
TCCCGACTTCATCTACAACTACGACGAGTCCAATCTCCAAGATGATCCTG
GGAAGCAGCGGGTCTTAGTTGGGAGCGGACAATTTAACCGTGTTGAAAAG
CTTGTTGAACATTCGAAGCAGTCATTTAGGTAACTTGCACGTTTTTATCT
GTCccaatttagaaatattttagattCGAAAAATCTTGAGCATATCGGCA
ATGGAGCCATGTAAGCCTCTAAATATTTGTGACCAATTATTTCCAAGGGG
TCGAATGGTCTGCTAATAGACATCATACAGTATTCTTATTATTGGCCGGC
ACTCATTGGTGGTCGACTCCAAATAGAaggtaaaaataatttgattgcTC
TTCCGAAAGGTTAACATTT
Run BLAST on NCBI

transcript from alignment at sc0000109:68201..68669

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010749 ID=TCONS_00010749|Name=TCONS_00010749|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at sc0000109:68201..68669 (Clytia hemisphaerica)
AAATGTTAACCTTTCGGAAGAgcaatcaaattatttttacctTCTATTTG
GAGTCGACCACCAATGAGTGCCGGCCAATAATAAGAATACTGTATGATGT
CTATTAGCAGACCATTCGACCCCTTGGAAATAATTGGTCACAAATATTTA
GAGGCTTACATGGCTCCATTGCCGATATGCTCAAGATTTTTCGaatctaa
aatatttctaaattggGACAGATAAAAACGTGCAAGTTACCTAAATGACT
GCTTCGAATGTTCAACAAGCTTTTCAACACGGTTAAATTGTCCGCTCCCA
ACTAAGACCCGCTGCTTCCCAGGATCATCTTGGAGATTGGACTCGTCGTA
GTTGTAGATGAAGTCGGGATCGATATCCTTGATAGCGTTCGTAAGTTCCT
TGTGATAATCCTTAAATAAAAAAGTGAACTTGTTAGCCAAATATGACTTA
GCTATTGTTGCAATACGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006023XLOC_006023Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010749-exon-sc0000109-1491911889:68201..68669TCONS_00010749-exon-sc0000109-1491911889:68201..68669Clytia hemisphaericaexon
TCONS_00010749-exon-sc0000109-1510915933:68201..68669TCONS_00010749-exon-sc0000109-1510915933:68201..68669Clytia hemisphaericaexon
TCONS_00010749-exon-sc0000109-1575043694:68201..68669TCONS_00010749-exon-sc0000109-1575043694:68201..68669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:68201..68669 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.133063	0	0	3.31226	1.01787	0.701727	0.985422	1.03488	0.997003	0.82947	0.181754	1.36126	1.97915	0.30993	0.332602	0.819477	0.209984	0.725262	0.455361	0.395791	0.193053	0.312908	0	2.93007	4.96853	0.187104	0.199682	0.151452	0.154306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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