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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010537 ID=TCONS_00010537|Name=TCONS_00010537|organism=Clytia hemisphaerica|type=transcript|length=1441bp
CGCTAAGTCAGAACATGAATTTTTCTCATCGAGAGAGGGGAGAGGAAGTA
GTATTTTAACTAAACTTGACTTATTTGGCAATTTATATATCGACTTTGCT
TTCATTTTTGACTTGTTTGTTTGTCCATGGAAATTAAGACTATAACTTGT
TGATGTTCTTTATATTTACAGTGTTTGAAACGATAATAAACAATTAGTAA
AAATTATACACACAAATTATACCGATTACTCAAATCAAGAATATTgcaat
tatttgaaaaaaaagacctttgaatatttatttttggaaaatatctaCTT
TGATCAAAATGAAGAATTGTTTGTGTCAGATAGTTATTGTATTTTTGGTA
TTGCCTTACACAGCAgcACGAGTGGCTTTTGGCAATATGCTTTGCAAGAA
ACAATCTGATTGTCAGGATAATCAATGTTGTGCTATGGTCGCTGTCGGCA
AATCACGGACTGGATTTTGCATGCCTGCTAAACAACTCGGAGACAGATGC
GCGCCGACATTTATATACGGCAAAAGTTTCACGTGCGGATGTCAGAGAGG
ACTTTCATGCGCTTTAGTTGAAGTCAACGAAGCTACAAACAGCCAAAAAC
ATCGTTGTGTTAAAGTTCTACCGGACCTGAAAGAGAAACGGAAGTCTAAC
GGGTCGACGTCTTTGGAAAAGGAAAAAGCAACGTTTACCGCACAGCTTAT
CCGGGAATTATTGAGCCCGGATTTTTTATCGGACACTTTGGATGAGGACG
AAGAGAAGAAAGCTACatgaatgtttttttaaagttaaagaaaatgtgTT
GTCgtttatttttaaatgaaagaaTTAAAAGAAAGAACGTGGTACGACAT
GATTAAAGGACGTAGCACgacagaaaaagtttttttgacagGAAAGGAGA
TACGCGTAATCAACCTGCATAATACAATTGTTAGCCTTCTTTTGATTGGA
TAATAAGTCGATAATGATGCATTGGTACGgtatttgataaaatattttcc
tttggcaaaaatattttatgcGAGATATTATGAAATCACCCGAGAAATCT
TTTAGCACTGAAGTATTTTGCTCTCAAAGTCTGGAATACGAACAAAAATG
AACCCTGTCTGACCATCATTGAAGGGATGAATTATGGTCTTCTGTTGAAC
CATATACAAATGAAATATTCAGTGAGAgcggaaatttttgaaaaaatttt
caatcattttattttattaaaattttatttgtttttgtttttatatattg
AAGTATTCTTACACTGCGATCCCTTTCCAGagttttagtacacatggtca
AATTCGGAATAATATCTTGTTATCTTAAGCTGTAGTAACTTTATGGATTT
TTTAGTTGATTCAAATATCATGGACATTAGAAAGATGTCAAAAAAGATGT
CGACAAAAGGCTAAGATTTAATATTTAACCTCTGTTGTAAA Run BLAST on NCBI transcript from alignment at sc0000107:578933..582657+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010537 ID=TCONS_00010537|Name=TCONS_00010537|organism=Clytia hemisphaerica|type=transcript|length=3725bp|location=Sequence derived from alignment at sc0000107:578933..582657+ (Clytia hemisphaerica)
CGCTAAGTCAGAACATGAATTTTTCTCATCGAGAGAGGGGAGAGGAAGTA
GTATTTTAACTAAACTTGACTTATTTGGCAATTTATATATCGACTTTGCT
TTCATTTTTGACTTGTTTGTTTGTCCATGGAAATTAAGACTATAACTTGT
TGATGTTCTTTATATTTACAGTGTTTGAAACGATAATAAACAATTAGTAA
AAATTATACACACAAATTATACCGATTACTCAAATCAAGAATATTgcaat
tatttgaaaaaaaagacctttgaatatttatttttggaaaatatctaCTT
TGATCAAAATGAAGAATTGTTTGTGTCAGATAGTTATTGTATTTTTGGTA
TTGCCTTACACAGCAGTAAGTAGTTTTAACTAAAGATGTAAAAATAGTTT
AAGACCTAACCTATgacatatattttttttataccGCGCATGTTTACATT
TTTCCACCTATACTATCCCTGTAAAGGACGATAGCATAGTCTATTTACGG
CCGTGATTAGAGGCGTACCTCTTTCGTTAGCTACATTATAAGGATACCGC
TCCTCTCCCCGGGTTTCTCCACTTACCTTTAAAGTGAACGCTGTTAAAGT
GAGATTAACACCTGGGTTTTGACCGAAACCACAATGTAGCAGAGTGAAAT
ACCATTACGCTATCTAAAAGTTAACCCTAAACAAGATGTTTCGTTTTCAT
TTACTGTATTCTTATAGTTTTCCTTAAAAAGCAATAGACTTTGCTgacaa
ttttctatttttacttCCCTCTTAATTTCATTGACGTTTAAAAGTGGAAG
GTATTAAAGTTACCTGGCTAATCTTATATCTTAGTCAAACAAATCTGACA
GCCTCTTGTCAATTTTCTTCTTGCAACATAAGAACCATCATCAAAGGGTC
cttgttttatattttgtacttttAGCCTTAAAAGCTGAATGTACAAATTC
ATATCACGACTTAAAAAGATGCCTAGATTGATATATATGGGTTTCAATCA
GTTGTTTTTTTTGACAGAATGttataattttcatttctattttttttagg
cACGAGTGGCTTTTGGCAATATGCTTTGCAAGAAACAATCTGATTGTCAG
GATAATCAATGTTGTGCTATGGTCGCTGTCGGCAAATCACGGACTGGATT
TTGCATGCCTGCTAAACAACTCGGAGACAGATGCGCGCCGACATTTATAG
TAAGTCATGTCTATATGACATCTATTTATCATAATGTTTTCTTTCTGCGG
TTACCCCTTAAATCAATTTTTCCCACGAGTAACTTGAAAGCTTGAATCTC
AttctaaataaagaaaattgacGCGCGAGTTTTTGACATGGTGGACATTT
CCTTTGCTCTTTTTTAAGGGGaaattcaaataatttaaaCCAATTTCCAT
AGGATAACACTGTATTGAACAGTGGTGTCGAAGTTTGTTTTGACAGAATT
TCTTGCTATAAAAAGGGGTTGTATTTTCTATTCAAAACGGATAGGCGAAC
TGTCTGGTGGATTTATGATGTGCtaaatgattatgtcaaaaggCGGTCAC
TAAAACCTTTAGCATCAAATTTGCCTTCTGAAGCTTGTTTGATATCTTCG
GTATTCATTTAGTTTGACGGTAAACTTTCTCTTATCAACGATTTTTGGCG
CTATGTAAAGAGGAGAACTTCCAAATAGACCGATTTCATTTCGCTCCAAA
CAGCTTTTTGCTTCGTTTCTTGTCCAAATTTCTCATAAAATCTTTGTTTT
AAGACTAAATGTTCCCCAAAAGAACTATGGTAAAGTTATTTCAAAGTTTA
GAAATTTGggtgttttttgttgttttgtatcCTAGCATTTTTGTCATATT
TCATTGTCAAATGGAAGCACCCCAACCTAGTTTGATGTCAAGAATTTGTA
TTTCATCTGTTTTTAACTGTGACAGTGTTTTCTCATTTTacccttctttt
ttttcttgctACCTTTTTCTCAGTGCCACTCTAAATCTTTGAAATCTCCT
TCATTAAAACTATTCAGATACCGATAACTTTCCCATCTCATTcacttttg
aaggaaaaattccTGGTATAGAAGCTCAGCAGTTGGTCCTTCTCTAGTCT
GTattgcagacctctatagatttGTTTCCTAAAGAAAAAAACTCTAGTCC
TTCTCCTAGAAGTTATTCCAATATActtcatttttgaccaaaaaagtttt
ttcacctTGACACTTCAGTTGAATAGAAATTTGACTTAAATGGGTTTCAC
GCTCTAGGGGATACATCCGAGTATATGTTTATTGTATCAGATTGATTGGT
GCatctttcaaaatatcagacTTCCTGcattttttgattgaaactCTTCA
ATCTTGAAACGTGACCCAAATATGTAAACAATATGATTTTATGCAAATTA
GGGGCAATCCGTAACCGTAGGattgtctttcttttttaagTTAGGCTCAA
AGAGtcctcttttcaaaaaaattaaaataggaGTTTTATTACGGCTACGG
TTTAGGTTTTCCGCGCGTACAAGTGTTAATTTTACGGCGGTTCCGTGTTA
AAAGCCATTACGTCATGCCAATCACGAATAACGTGTGAATATGCTGCACA
GAAAAATCACTTCCCCCTTTTAATATCACTGTTGGAAATTCATAATACCT
TCAATAAAAATGCTATGTTTTAAACAGAGTAAGACCACGGTGGTTCTTCC
TCTTCACGGTATTATGTCAAAACGACCTTAATTTCCGacaatgaaatatt
tcaaacattcaaattaattccttttcttttttctcttctctATTTTTAGT
ACGGCAAAAGTTTCACGTGCGGATGTCAGAGAGGACTTTCATGCGCTTTA
GTTGAAGTCAACGAAGCTACAAACAGCCAAAAACATCGTTGTGTTAAAGT
TCTACCGGACCTGAAAGAGAAACGGAAGTCTAACGGGTCGACGTCTTTGG
AAAAGGAAAAAGCAACGTTTACCGCACAGCTTATCCGGGAATTATTGAGC
CCGGATTTTTTATCGGACACTTTGGATGAGGACGAAGAGAAGAAAGCTAC
atgaatgtttttttaaagttaaagaaaatgtgTTGTCgtttatttttaaa
tgaaagaaTTAAAAGAAAGAACGTGGTACGACATGATTAAAGGACGTAGC
ACgacagaaaaagtttttttgacagGAAAGGAGATACGCGTAATCAACCT
GCATAATACAATTGTTAGCCTTCTTTTGATTGGATAATAAGTCGATAATG
ATGCATTGGTACGgtatttgataaaatattttcctttggcaaaaatattt
tatgcGAGATATTATGAAATCACCCGAGAAATCTTTTAGCACTGAAGTAT
TTTGCTCTCAAAGTCTGGAATACGAACAAAAATGAACCCTGTCTGACCAT
CATTGAAGGGATGAATTATGGTCTTCTGTTGAACCATATACAAATGAAAT
ATTCAGTGAGAgcggaaatttttgaaaaaattttcaatcattttatttta
ttaaaattttatttgtttttgtttttatatattgAAGTATTCTTACACTG
CGATCCCTTTCCAGagttttagtacacatggtcaAATTCGGAATAATATC
TTGTTATCTTAAGCTGTAGTAACTTTATGGATTTTTTAGTTGATTCAAAT
ATCATGGACATTAGAAAGATGTCAAAAAAGATGTCGACAAAAGGCTAAGA
TTTAATATTTAACCTCTGTTGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010537-exon-sc0000107-1491911889:578933..579297 | TCONS_00010537-exon-sc0000107-1491911889:578933..579297 | Clytia hemisphaerica | exon |
| TCONS_00010537-exon-sc0000107-1510915933:578933..579297 | TCONS_00010537-exon-sc0000107-1510915933:578933..579297 | Clytia hemisphaerica | exon |
| TCONS_00010537-exon-sc0000107-1575043694:578933..579297 | TCONS_00010537-exon-sc0000107-1575043694:578933..579297 | Clytia hemisphaerica | exon |
| TCONS_00010537-exon-sc0000107-1491911889:579982..580131 | TCONS_00010537-exon-sc0000107-1491911889:579982..580131 | Clytia hemisphaerica | exon |
| TCONS_00010537-exon-sc0000107-1510915933:579982..580131 | TCONS_00010537-exon-sc0000107-1510915933:579982..580131 | Clytia hemisphaerica | exon |
| TCONS_00010537-exon-sc0000107-1575043694:579982..580131 | TCONS_00010537-exon-sc0000107-1575043694:579982..580131 | Clytia hemisphaerica | exon |
| TCONS_00010537-exon-sc0000107-1491911889:581732..582657 | TCONS_00010537-exon-sc0000107-1491911889:581732..582657 | Clytia hemisphaerica | exon |
| TCONS_00010537-exon-sc0000107-1510915933:581732..582657 | TCONS_00010537-exon-sc0000107-1510915933:581732..582657 | Clytia hemisphaerica | exon |
| TCONS_00010537-exon-sc0000107-1575043694:581732..582657 | TCONS_00010537-exon-sc0000107-1575043694:581732..582657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000107 | supercontig | sc0000107:578933..582657 + |
Blast
The following BLAST results are available for this feature:
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