TCONS_00001104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001104
Unique NameTCONS_00001104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1024

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001104 ID=TCONS_00001104|Name=TCONS_00001104|organism=Clytia hemisphaerica|type=transcript|length=1024bp
cagaaatattattttttttagaaaatcttaagagaaattttaaaaatttg
tcgatcaaaatcataaaatatatcTTATCATAAGAAGAAATTACGTAAGA
TATTctcaaagaaaaatattatatgCAGGTGTTATTTTGTTACCAACAAT
GGGTTGGTTGAAATCAGTATTTTGTGGAGTGAAATGGTTCTTAGGGATCG
ATGAAGATCAATCGAATGACTCAAAACTTGCTCCAAAAGCATCTCCATTC
GTCGACAGCAAACCGAGccGTATGTACTATGATGAAGACGGGGACTTAGC
AGAAGAATTTTATGAAGAAGTCACTCCGCAACAAGGAACTCCATGGATGA
GAAGAGTCACCAAAAACCTTACCAAACAGGGTGTAGTACCATTGGAAATC
CAACGATTACATCCCGACTTTCCGCTCGTCATGTGTGATGTTTCATCATG
AAGTATGCATCTGAAATGGTTTGGTTTTGGTTTGAGTATTTATGATGGTT
CACCGTATGACTTGTAGTGCTGCTCTTCTCGATagagagattttcaaaaa
tgactaaaaagtCAATAGGCGACGGTTATAGTTACTGTCAGCTTTCTGAC
GTATCATTGAAACATAAATGCAAAGAGGTTGTTCCCTCTTGTAATTTGAA
TCAGCAGATGAGCTTATACCTTACAATTTATTAAAAATGggttttacatt
ttactacgtACATTGTGTGAAAGGTCATTGTGACAAATACATACGAAAAG
ACATTCAATTCATTCGTTTTTCGTCATCTGGTCATTTTCCCACAACTCTC
ATTCTACATCAGCAATAACTTATAATCGTGATTTCCAAAAATCGTTATCA
AAACTGctgatcaaatttttttataagcataacgcttataagcatacgaa
ggctcagatttgcagaattcctaagcataacatgagcatatatgtcagcc
taaaatatttttcaagtggtcatttttatctgtttaaaaaggtttggtag
aggtcaagtaaaaaataagacatt
Run BLAST on NCBI

protein sequence of TCONS_00001104-protein

>TCONS_00001104-protein ID=TCONS_00001104-protein|Name=TCONS_00001104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MGWLKSVFCGVKWFLGIDEDQSNDSKLAPKASPFVDSKPSRMYYDEDGDL
AEEFYEEVTPQQGTPWMRRVTKNLTKQGVVPLEIQRLHPDFPLVMCDVSS
Run BLAST on NCBI

transcript from alignment at sc0000007:267072..269395-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001104 ID=TCONS_00001104|Name=TCONS_00001104|organism=Clytia hemisphaerica|type=transcript|length=2324bp|location=Sequence derived from alignment at sc0000007:267072..269395- (Clytia hemisphaerica)
CAGAAATATTATTTTTTTTAGAAAATCTTAAGAGAAATTTTAAAAATTTG
TCGATCAAAATCATAAAATATATCTTATCATAAGAAGAAATTACGTAAGA
TATTCTCAAAGAAAAATATTATATGCAGGTGTTATTTTGTTACCAACAAT
GGGTTGGTTGAAATCAGTATTTTGTGGAGTGAAATGGTTCTTAGGGATCG
ATGAAGATCAATCGAATGACTCAAAACTTGCTCCAAAAGCATCTCCATTC
GTCGACAGCAAACCGAGGTAAAAATTACCTTCCACTCTCAACTCTAATGC
TTTGACGTCAGATACCTCTGAAATGTTTTATTGATTGTGAAAGAAAGATA
CCTGTTGATCTCGCACTCTCGACAATGCTCGCTTTTGTTCTTTAAATTGT
ATGAGTCGAATTGAAACTTTTGGGGGAAAATAGGCTAAAAACATTTTTCA
ACGATGGCTATTTTATAATTAACCTACTGAAACCTCTACCTTTTAACTAA
GGCTGAAATAAAATTTCAATTTCAATTTTCAGCCGTATGTACTATGATGA
AGACGGGGACTTAGCAGAAGAATTTTATGAAGAAGTCACTCCGCAACAAG
GAACTCCATGGATGAGAAGAGTCACCAAAAACCTTACCAAACAGGTCTGT
CGAGTTGACTTTACATCATCCCACTATTCTTAAGATTGCTAAATTTCTTT
TAAGAATAGACCAAAAGCTGAGAGACCTAATTTAGAAAGTCTAAATCCCT
AAAATTTGTGTAAAATGCTGTAGGTGCATTTTTGAAAACGTTGGAATAAT
TTTAAGAAATTAGAATTGTATGTAAATTTGACCTCTAGGCATTTCAGGGT
GTGCGAAACATTAAAAATAATTTACCAAGGGAATGTTAAAAACGATTTCA
AGGATTTTTCTATTCAAAAAATTCTAAAAAATTCACGATATCAAGAGATA
TTAAGAGAGAGTTTATGTATTTCGTCCCACGTAAACATTTTCAAGGATTT
TAGGGAGAAAGGAGAAAATCTACATTTTTTTACTTAGACTTCGGCAAAAA
GTTTTGATAACGTTTAATTTTTAAGATTTTCGGGTTTTTCATTAATTTTT
TTTCCTCTCAATTTTCAAGCTATAGAAATGGAAATGATGTTGCCATCAAC
TTTTAATCAGTTGCCTTGAAACCCACGAATTTCTTTGAACAATCCTTATT
TTTAAATGATAATAATGATAATGATGAAACGATTATCTTAACGACATTTC
AACTCGATTTCAATAATGGCACAATTTGTTATGAAAAAGTCATTTTTGGT
TTGCAGCAATTTTCATACAGACAATCTGAAGAACCAAATAAACCATACAA
CTATTTTAACCACCTTATATAATGAGATTTTTTATCGCCTCGTGATCAAA
TCTGAAGAAATGAATGACGTCTTGAGATTTCATGAGATTTAATGACAGAT
TATAGACAAGGAAGAAGATTAGTGAAATGGTTTGATACTCAATTTCTTGT
CGCTTCTTCCTTTTGTCTTTCGGTGTTAAAATGACTCACGAATTTAACTT
CTATCGATATTATATTTTATAATGGCTCTTTGACAAAATAGCACCTATGT
CCAGTGATTTGGTAAGTCAGCTCAAGGAGATGAAATAGAGGATTTGTTGT
TGTCATTTACTTTATTTTCTTACTTATAGGGTGTAGTACCATTGGAAATC
CAACGATTACATCCCGACTTTCCGCTCGTCATGTGTGATGTTTCATCATG
AAGTATGCATCTGAAATGGTTTGGTTTTGGTTTGAGTATTTATGATGGTT
CACCGTATGACTTGTAGTGCTGCTCTTCTCGATAGAGAGATTTTCAAAAA
TGACTAAAAAGTCAATAGGCGACGGTTATAGTTACTGTCAGCTTTCTGAC
GTATCATTGAAACATAAATGCAAAGAGGTTGTTCCCTCTTGTAATTTGAA
TCAGCAGATGAGCTTATACCTTACAATTTATTAAAAATGGGTTTTACATT
TTACTACGTACATTGTGTGAAAGGTCATTGTGACAAATACATACGAAAAG
ACATTCAATTCATTCGTTTTTCGTCATCTGGTCATTTTCCCACAACTCTC
ATTCTACATCAGCAATAACTTATAATCGTGATTTCCAAAAATCGTTATCA
AAACTGCTGATCAAATTTTTTTATAAGCATAACGCTTATAAGCATACGAA
GGCTCAGATTTGCAGAATTCCTAAGCATAACATGAGCATATATGTCAGCC
TAAAATATTTTTCAAGTGGTCATTTTTATCTGTTTAAAAAGGTTTGGTAG
AGGTCAAGTAAAAAATAAGACATT

Coding sequence (CDS) from alignment at sc0000007:267072..269395-

>TCONS_00001104 ID=TCONS_00001104|Name=TCONS_00001104|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at sc0000007:267072..269395- (Clytia hemisphaerica)
GGTGTAGTACCATTGGAAATCCAACGATTACATCCCGACTTTCCGCTCGT
CATGTGTGATGTTTCATCATGACCGTATGTACTATGATGAAGACGGGGAC
TTAGCAGAAGAATTTTATGAAGAAGTCACTCCGCAACAAGGAACTCCATG
GATGAGAAGAGTCACCAAAAACCTTACCAAACAGATGGGTTGGTTGAAAT
CAGTATTTTGTGGAGTGAAATGGTTCTTAGGGATCGATGAAGATCAATCG
AATGACTCAAAACTTGCTCCAAAAGCATCTCCATTCGTCGACAGCAAACC
GAGGGTGTAGTACCATTGGAAATCCAACGATTACATCCCGACTTTCCGCT
CGTCATGTGTGATGTTTCATCATGACCGTATGTACTATGATGAAGACGGG
GACTTAGCAGAAGAATTTTATGAAGAAGTCACTCCGCAACAAGGAACTCC
ATGGATGAGAAGAGTCACCAAAAACCTTACCAAACAGATGGGTTGGTTGA
AATCAGTATTTTGTGGAGTGAAATGGTTCTTAGGGATCGATGAAGATCAA
TCGAATGACTCAAAACTTGCTCCAAAAGCATCTCCATTCGTCGACAGCAA
ACCGAGGGTGTAGTACCATTGGAAATCCAACGATTACATCCCGACTTTCC
GCTCGTCATGTGTGATGTTTCATCATGACCGTATGTACTATGATGAAGAC
GGGGACTTAGCAGAAGAATTTTATGAAGAAGTCACTCCGCAACAAGGAAC
TCCATGGATGAGAAGAGTCACCAAAAACCTTACCAAACAGATGGGTTGGT
TGAAATCAGTATTTTGTGGAGTGAAATGGTTCTTAGGGATCGATGAAGAT
CAATCGAATGACTCAAAACTTGCTCCAAAAGCATCTCCATTCGTCGACAG
CAAACCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000621XLOC_000621Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001104-proteinTCONS_00001104-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001104-exon-sc0000007-1575043694:269129..269395TCONS_00001104-exon-sc0000007-1575043694:269129..269395Clytia hemisphaericaexon
TCONS_00001104-exon-sc0000007-1575043694:268752..268863TCONS_00001104-exon-sc0000007-1575043694:268752..268863Clytia hemisphaericaexon
TCONS_00001104-exon-sc0000007-1575043694:267072..267716TCONS_00001104-exon-sc0000007-1575043694:267072..267716Clytia hemisphaericaexon
TCONS_00001104-exon-sc0000007-1510915933:269129..269395TCONS_00001104-exon-sc0000007-1510915933:269129..269395Clytia hemisphaericaexon
TCONS_00001104-exon-sc0000007-1510915933:268752..268863TCONS_00001104-exon-sc0000007-1510915933:268752..268863Clytia hemisphaericaexon
TCONS_00001104-exon-sc0000007-1510915933:267072..267716TCONS_00001104-exon-sc0000007-1510915933:267072..267716Clytia hemisphaericaexon
TCONS_00001104-exon-sc0000007-1491911889:269129..269395TCONS_00001104-exon-sc0000007-1491911889:269129..269395Clytia hemisphaericaexon
TCONS_00001104-exon-sc0000007-1491911889:268752..268863TCONS_00001104-exon-sc0000007-1491911889:268752..268863Clytia hemisphaericaexon
TCONS_00001104-exon-sc0000007-1491911889:267072..267716TCONS_00001104-exon-sc0000007-1491911889:267072..267716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:267072..269395 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.5464	25.0017	13.0218	11.5857	18.355	14.746	13.8353	14.736	13.7643	13.9586	9.05229	9.11726	9.08111	6.72239	9.23295	9.38243	17.5923	15.8413	9.01283	10.2748	12.6228	11.8072	25.1494	22.6089	6.61595	6.00331	27.8802	27.1729	23.2159	23.4272
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029393FUS1
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top