TCONS_00001104-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001104-protein
Unique Name	TCONS_00001104-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	100

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001104-protein ID=TCONS_00001104-protein|Name=TCONS_00001104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MGWLKSVFCGVKWFLGIDEDQSNDSKLAPKASPFVDSKPSRMYYDEDGDL
AEEFYEEVTPQQGTPWMRRVTKNLTKQGVVPLEIQRLHPDFPLVMCDVSS

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000621	XLOC_000621	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001104	TCONS_00001104	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029393	FUS1

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029393	Tumour suppressor candidate 2	PFAM	PF15000	TUSC2	coord: 23..97 e-value: 1.1E-23 score: 83.6

Blast

[Close]

BLAST of TCONS_00001104-protein vs. Swiss-Prot (Human)
Match: TUSC2 (Tumor suppressor candidate 2 OS=Homo sapiens GN=TUSC2 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.036e-16
Identity = 36/69 (52.17%), Postives = 47/69 (68.12%), Query Frame = 0

Query:   33 PFVDSKPSRMYYDEDGDLAEEFYEE--VTPQ-QGTPWMRRVTKNLTKQGVVPLEIQRLHPDFPLVMCDV 98
            PFV ++   M+YDEDGDLA EFYEE  VT   Q    +RRV KNL  QG+V L+  R+H DFP+++ +V
Sbjct:   42 PFVFTRRGSMFYDEDGDLAHEFYEETIVTKNGQKRAKLRRVHKNLIPQGIVKLDHPRIHVDFPVILYEV 110

The following BLAST results are available for this feature:

BLAST of TCONS_00001104-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001104-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TUSC2	1.036e-16	52.17	Tumor suppressor candidate 2 OS=Homo sapiens GN=TU...	[more]

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TCONS_00001104-protein (polypeptide) - C. hemisphaerica