TCONS_00010348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010348
Unique NameTCONS_00010348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010348 ID=TCONS_00010348|Name=TCONS_00010348|organism=Clytia hemisphaerica|type=transcript|length=396bp
ATTGCTCATTTGCCTTAATAgcaactttgattttttaacttCTTGTTAAT
GATGGCTGGATATCCAGCCATATTTAAACACGGTTCATTAAAGGAGAACA
AAGTACTTATCCAAAAGACCATCCAATAGTAGGAAAGTCTTTTCTACGAG
TCACTTTTTCACTAGATTATGTCAAGGCCCGATTACTCCTGTCGGATATC
CGCTATGAACAAACCCTCGTTTGAAATTGAGATATCAACCTCGTTCCctt
gtattccaggctttatttacgttactgttGAACGCAAGAGAATATTATTA
TCAAGAGCCATCAGTGAGCATAATCAGtaaagctgataatacacaaGGAA
CGAGGGATATTTAGTTGTTTTCCGATTTTTACGTAACTAATACAAC
Run BLAST on NCBI

transcript from alignment at sc0000104:195084..195479

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010348 ID=TCONS_00010348|Name=TCONS_00010348|organism=Clytia hemisphaerica|type=transcript|length=396bp|location=Sequence derived from alignment at sc0000104:195084..195479 (Clytia hemisphaerica)
GTTGTATTAGTTACGTAAAAATCGGAAAACAACTAAATATCCCTCGTTCC
ttgtgtattatcagctttaCTGATTATGCTCACTGATGGCTCTTGATAAT
AATATTCTCTTGCGTTCaacagtaacgtaaataaagcctggaatacaagG
GAACGAGGTTGATATCTCAATTTCAAACGAGGGTTTGTTCATAGCGGATA
TCCGACAGGAGTAATCGGGCCTTGACATAATCTAGTGAAAAAGTGACTCG
TAGAAAAGACTTTCCTACTATTGGATGGTCTTTTGGATAAGTACTTTGTT
CTCCTTTAATGAACCGTGTTTAAATATGGCTGGATATCCAGCCATCATTA
ACAAGaagttaaaaaatcaaagttgcTATTAAGGCAAATGAGCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005807XLOC_005807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010348-exon-sc0000104-1491911889:195084..195479TCONS_00010348-exon-sc0000104-1491911889:195084..195479Clytia hemisphaericaexon
TCONS_00010348-exon-sc0000104-1510915933:195084..195479TCONS_00010348-exon-sc0000104-1510915933:195084..195479Clytia hemisphaericaexon
TCONS_00010348-exon-sc0000104-1575043694:195084..195479TCONS_00010348-exon-sc0000104-1575043694:195084..195479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104supercontigsc0000104:195084..195479 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.948603	0.925037	2.36292	0.840637	2.55849	1.6174	2.19524	2.96856	2.39811	1.58424	4.42088	1.64259	0.378532	0.393109	0.323189	1.61855	1.13938	0.729892	0.605031	1.0552	0	0.268416	0.21753	0	0.814778	1.99972	0.780434	0.277633	0.42115	0.214543
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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