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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010201 ID=TCONS_00010201|Name=TCONS_00010201|organism=Clytia hemisphaerica|type=transcript|length=1512bp
gcgCAAACTAACCTATGTACATCATGTATGTATATGTATATCATTCAGTG
TTTTTAAGATTTGCTGACATAAGCTTTACTGTGTCATGTTTTATATAAGT
TACTTCAGTGTAACAAGTACATTTTCTCTTCTGAACGAAAAACTATGCTT
TTGCATCAAAAGGGTCAATTTCTTGAGACGGAAACCCATGAATTTGGAGC
ATCAAAAAACATAAAGCCGATggaagaaaaatatcaacattaaatttcac
aATTACGGTttttttttatggttttgttaTGGTTAACCATAACAAATCCA
ACGAAGAGTACAAAAATGATTGATGAATATCGCTAGAACTACATCAAAGC
TCATGTAAAGGCCAAAATAGCCAAAAATAGTGGTCACTAATTAGCGCATC
AGTTAAATGTTCGCGTGGCATAGTGCGCGAAGATTAAGGGAATTAAGGTA
CCAAGATTGTGCGTATTTTTCATTCAACGTTAAATTAAAAGTAACACCTA
CCACTTAAAAAAacgttattgcaaaaaatgaaaaataagtaaTTGATTCG
ATTAATTTTCGATTTGATTCTTTATTGACTTACTTACCCCTTCCCGAGTA
TAATAGAAGCTTAAAATCCAGTCTTTGGCTTCTGGCTTTATAACTTTCTA
ATTACAACTTTCTCTCTCAAAATGGTGTAAGGCTCACATTGCAACaatct
gattttaaaattcagAATCAAAAGGTAagtgaagtaaaaatttctgatga
taatttttaaaattacaaTTAAAATCGTTTCCTTACCTGTAAAGAAATCT
CTTCGTACACCACCTTGATCCACGNGAAATCGTTTCCTTACCTGTAGAGA
AATCTCTTCGTACACCACCTTGATCCACGCCGTGTTCACCGTAAAAAATT
ATTCTTAATGCATTGTTTTTGCTTTGTCTCTTCATGAACGGTGAGCTCCT
TTTTTCGACGAAATCATTGAAACAGTTTCCTCGTCTGATTCTAATTGATG
TTTCACTTTTAAAATCAATAGCCAACGAAGAAATTACATCTTTAATGGTT
ATTGCTACTTCAGTGTCCTCCATTCCAATGTCTTCACCATCTGAACAAGA
AGTACTCTCATCATCATCACATACAACAGTGTTTGCAAATTTTTCATCAG
CACACTGAATGGCATGCTCCTCAACATCTGAACTCGCGAAAAACTTTTTA
CATACAGGACAGCGTACTTCTCTTCTGGAATGAACTTGTCTGGCTTTGGT
CGAGATACCAGACGATAAGGAAAGAGCTTTTTTCTCTGATGTTTTGAATC
CACCCATGTGATTCTTTTCTCCACAGGTTGATGCATGATTCTCAATTTCT
GAAGAAGCAAAGGATTTTCGACAAAGAGGACATTGTTGATTTTGAATGGT
TTTAGGAACAAACGATGTTTCATGCCTTGTGTTGGATGACGTACAAAAAT
CAAAGTGGAATCTTCCATCAATGATGGCTCCTCAGGAACATTATTTCGTC
TGATATTCTGCC Run BLAST on NCBI transcript from alignment at sc0000103:256762..258490- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010201 ID=TCONS_00010201|Name=TCONS_00010201|organism=Clytia hemisphaerica|type=transcript|length=1729bp|location=Sequence derived from alignment at sc0000103:256762..258490- (Clytia hemisphaerica)
GCGCAAACTAACCTATGTACATCATGTATGTATATGTATATCATTCAGTG
TTTTTAAGATTTGCTGACATAAGCTTTACTGTGTCATGTTTTATATAAGT
TACTTCAGTGTAACAAGTACATTTTCTCTTCTGAACGAAAAACTATGCTT
TTGCATCAAAAGGGTCAATTTCTTGAGACGGAAACCCATGAATTTGGAGC
ATCAAAAAACATAAAGCCGATGGAAGAAAAATATCAACATTAAATTTCAC
AATTACGGTTTTTTTTTATGGTTTTGTTATGGTTAACCATAACAAATCCA
ACGAAGAGTACAAAAATGATTGATGAATATCGCTAGAACTACATCAAAGC
TCATGTAAAGGCCAAAATAGCCAAAAATAGTGGTCACTAATTAGCGCATC
AGTTAAATGTTCGCGTGGCATAGTGCGCGAAGATTAAGGGAATTAAGGTA
CCAAGATTGTGCGTATTTTTCATTCAACGTTAAATTAAAAGTAACACCTA
CCACTTAAAAAAACGTTATTGCAAAAAATGAAAAATAAGTAATTGATTCG
ATTAATTTTCGATTTGATTCTTTATTGACTTACTTACCCCTTCCCGAGTA
TAATAGAAGCTTAAAATCCAGTCTTTGGCTTCTGGCTTTATAACTTTCTA
ATTACAACTTTCTCTCTCAAAATGGTGTAAGGCTCACATTGCAACAATCT
GATTTTAAAATTCAGAATCAAAAGGTAAGTGAAGTAAAAATTTCTGATGA
TAATTTTTAAAATTACAATTAAAATCGTTTCCTTACCTGTAAAGAAATCT
CTTCGTACACCACCTTGATCCACGNGAAATCGTTTCCTTACCTGTAGAGA
AATCTCTTCGTACACCACCTTGATCCACGCCGTGTTCACCGTAAAAAATT
ATTCTTAATGCATTGTTTTTGCTTTGTCTCTTCATGAACGGTGAGCTCCT
TTTTTCGACGAAATCATTGAAACAGTTTCCTCGTCTGATTCTAATTGATG
TTTCACTTTTAAAATCAATAGCCAACGAAGAAATTACATCTTTAATGGTT
ATTGCTACTTCAGTGTCCTCCATTCCAATGTCTTCACCATCTGAACAAGA
AGTACTCTCATCATCATCACATACAACAGTGTTTGCAAATTTTTCATCAG
CACACTGAATGGCATGCTCCTCAACATCTGAACTCGCGAAAAACTTTTTA
CATACAGGACAGCGTACTTCTCTTCTGGAATGAACTTGTCTGGCTTTGGT
CGAGATACCAGACGATAAGGAAAGAGCTTTTTTCTCTGATGTTTTGAATC
CACCCATGTGATTCTTTTCTCCACAGGTTGATGCATGATTCTCAATTTCT
GAAGAAGCAAAGGATTTTCGACAAAGAGGACATTGTTGATTTTGAATGGT
TTTAGGTAGGGTGTTAATTTTACTCCCACTGATAAGGTCCATTGTAAAGT
TTGAATGTTCAACTTCCACCATAGTCAAATATCTTGAGTCGAATTTTTCA
ACCTTTTCGTTTGTATCCACAATCAATTCATTATTGAGCCCATGAAGCAA
GTGGAAAAGTTCAGGTTCAGGAGTAAGACTTCCGACCCAATTGTACACAT
CTTCCATTTTGCTTTTTGATAGGAACAAACGATGTTTCATGCCTTGTGTT
GGATGACGTACAAAAATCAAAGTGGAATCTTCCATCAATGATGGCTCCTC
AGGAACATTATTTCGTCTGATATTCTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010201-exon-sc0000103-1575043694:257086..258490 | TCONS_00010201-exon-sc0000103-1575043694:257086..258490 | Clytia hemisphaerica | exon |
| TCONS_00010201-exon-sc0000103-1575043694:256762..256868 | TCONS_00010201-exon-sc0000103-1575043694:256762..256868 | Clytia hemisphaerica | exon |
| TCONS_00010201-exon-sc0000103-1510915933:257086..258490 | TCONS_00010201-exon-sc0000103-1510915933:257086..258490 | Clytia hemisphaerica | exon |
| TCONS_00010201-exon-sc0000103-1510915933:256762..256868 | TCONS_00010201-exon-sc0000103-1510915933:256762..256868 | Clytia hemisphaerica | exon |
| TCONS_00010201-exon-sc0000103-1491911889:257086..258490 | TCONS_00010201-exon-sc0000103-1491911889:257086..258490 | Clytia hemisphaerica | exon |
| TCONS_00010201-exon-sc0000103-1491911889:256762..256868 | TCONS_00010201-exon-sc0000103-1491911889:256762..256868 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:256762..258490 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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