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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010113 ID=TCONS_00010113|Name=TCONS_00010113|organism=Clytia hemisphaerica|type=transcript|length=1250bp
CGCGAGATGACACGAGTGATAACTTCTCTCCTTTTATGCGCATGCTCAAT
AATTCGCATGCCGGAACATTCGTCCGGAACCGATAAGATACTAGATTTCT
gactatttttcaaaacatcagaAATCCCGCTTAAAGTTAAAGCCTTACCT
TACCTTACTTGGTCGGCCAAAACTTCGAGCCTCGGTGCGAAAAAAGTCAC
CTCGGCTAGATAATGTACCATTTAAAACCTTAACCTGCGAGGGAAACAAC
AATGTGGACTGAGTATACGTAGAAAATCTCTCTTAGGGTCTACTAGAGAA
AACAAGTACATTCTTTCCATAATATTTCTTACACTGTGATGtcagtcaaa
taaaaaaataaaacttaaaaactaCAAGACACTTTTTTTCATAATAAACG
TCCGTGTCAAATTACTTCTTACAAGTTTGAATGATTACTGTAATTAATAA
GGCATTTGTCTTCGCAACTTCTGAATCTTTATTAAATACCCACATATTTA
TACCCACATATGGTATggtatacactttttttattataaaaaacagtaaa
tttttgctgaggctcggctgttcttatttttttggcactttgagccttat
tttgttcttattttttctaaggtaaaaaataagttttggctatttacttt
actatttagaggattttcgaaaccagtgattctttttgctataactctct
ataacttcagcctctccattgttcttaaattattcttattttttggcatt
tttgagcctcattgttcttataaaattgttcttataaaaaaaaagtgtag
gccttttcataaatcacgtcacgaacatcacttgccttgttttaaaatta
ttgccatggtgatgaACTCCCAGATGATTTTATTACAACCACTTTCCctg
ttcattaaaaaaaatcatttaatatctcaagggatatgatcaacatggaa
attgtttgaatacgaggcaagtgatgctCGTGACGTAGTTTATAAAAAGG
TCTATGTATTGTCGCATGATTGTCGCAAAAAATACTTAAAAGAATTGTTT
CTCGAACTGGCAAAAGAAACTGGAGAATAAGCCTATCAAGTACAGTGCTA
CCACACATAAactgaaattaaaatttcacaAACCTCCTGCTTAATACAGC
TGGCGTAGgattaaaaacaaaatggctgctaCGAATGATGACACAAGAGA
AAATCAAAGACCAGAGATTTACAATGAACTTATAACGGATGAAGAGGTCT Run BLAST on NCBI transcript from alignment at sc0000102:303535..305504- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010113 ID=TCONS_00010113|Name=TCONS_00010113|organism=Clytia hemisphaerica|type=transcript|length=1970bp|location=Sequence derived from alignment at sc0000102:303535..305504- (Clytia hemisphaerica)
CGCGAGATGACACGAGTGATAACTTCTCTCCTTTTATGCGCATGCTCAAT
AATTCGCATGCCGGAACATTCGTCCGGAACCGATAAGATACTAGATTTCT
GACTATTTTTCAAAACATCAGAAATCCCGCTTAAAGTTAAAGCCTTACCT
TACCTTACTTGGTCGGCCAAAACTTCGAGCCTCGGTGCGAAAAAAGTCAC
CTCGGCTAGATAATGTACCATTTAAAACCTTAACCTGCGAGGGAAACAAC
AATGTGGACTGAGTATACGTAGAAAATCTCTCTTAGGGTCTACTAGAGAA
AACAAGTACATTCTTTCCATAATATTTCTTACACTGTGATGTCAGTCAAA
TAAAAAAATAAAACTTAAAAACTACAAGACACTTTTTTTCATAATAAACG
TCCGTGTCAAATTACTTCTTACAAGTTTGAATGATTACTGTAATTAATAA
GGCATTTGTCTTCGCAACTTCTGAATCTTTATTAAATACCCACATATTTA
TACCCACATATGGTATGGTATACACTTTTTTTATTATAAAAAACAGTAAA
TTTTTGCTGAGGCTCGGCTGTTCTTATTTTTTTGGCACTTTGAGCCTTAT
TTTGTTCTTATTTTTTCTAAGGTAAAAAATAAGTTTTGGCTATTTACTTT
ACTATTTAGAGGATTTTCGAAACCAGTGATTCTTTTTGCTATAACTCTCT
ATAACTTCAGCCTCTCCATTGTTCTTAAATTATTCTTATTTTTTGGCATT
TTTGAGCCTCATTGTTCTTATAAAATTGTTCTTATAAAAAAAAAGTGTAG
GCCTTTTCATAAATCACGTCACGAACATCACTTGCCTTGTTTTAAAATTA
TTGCCATGGTGATGAACTCCCAGATGATTTTATTACAACCACTTTCCCTG
TTCATTAAAAAAAATCATTTAATATCTCAAGGGATATGATCAACATGGAA
ATTGTTTGAATACGAGGCAAGTGATGCTCGTGACGTAGTTTATAAAAAGG
TCTATGTATTGTCGCATGATTGTCGCAAAAAATACTTAAAAGAATTGTTT
CTCGAACTGGCAAAAGAAACTGGAGAATAAGCCTATCAAGTACAGTGCTA
CCACACATAAACTGAAATTAAAATTTCACAAACCTCCTGCTTAATACAGC
TGGCGTAGGTAAATAGTTATTTTGCAATCTTACGAACATTTTTACATTTG
ATTGCTTTTCTCCTTAATTACACTCAATTAGACTATTAATTGTGTTCAAG
TGTAAATGCTATGCGAAAAAAGCTATCAAGTATAGGCTATCGTTTTTTTC
TGGATTGCTGGGTGAATACAAGAAGTTTATTTGTTGACTTTCCGAACCAA
AAAAAGACTATATTTACAGAGCTTTGAAATGTGATTCTGAAATGAACAAA
AATCATTTTGAACTACTTGAAGGGATTTTGAGATTTGAATTGCAGATATG
CTTTCTGTAGTTGACTTACGAGAAAGAAGATCAACATTTTATAATGATTT
AGATATAGAGAAAAATTCTTACGATAGAGTTTCGAATGCAAAAATAGTCG
AGTCGTGGTACTACAGAAAGAATACACCACTGAATTTTAAAGCCTGAAAG
GAGAGAGAGGAACTTCACTGTTTTTCCAACAATATTAAAGTTAAAAAGTG
AAAACTTGAGATGTGTGCCGTATTTGGGACAACGGATACAACGGATTGAA
TCTAGCGCTTTCTTTGGCATATTTTTTTAAAAATCTCACAATAAATTTTT
ACTTTTAATCCGGCATTTGTCTTTGGAACCAAATGGGTGTCCCGTATTTT
CATTCATTTCTAAACAAGAGAAGACTCCTGTCTAGGCATTCAAGCTTTAA
ACTCAATGGTTTACACTCTTCTTAAAAGGATTAAAAACAAAATGGCTGCT
ACGAATGATGACACAAGAGAAAATCAAAGACCAGAGATTTACAATGAACT
TATAACGGATGAAGAGGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010113-exon-sc0000102-1575043694:304347..305504 | TCONS_00010113-exon-sc0000102-1575043694:304347..305504 | Clytia hemisphaerica | exon |
| TCONS_00010113-exon-sc0000102-1575043694:303535..303626 | TCONS_00010113-exon-sc0000102-1575043694:303535..303626 | Clytia hemisphaerica | exon |
| TCONS_00010113-exon-sc0000102-1510915933:304347..305504 | TCONS_00010113-exon-sc0000102-1510915933:304347..305504 | Clytia hemisphaerica | exon |
| TCONS_00010113-exon-sc0000102-1510915933:303535..303626 | TCONS_00010113-exon-sc0000102-1510915933:303535..303626 | Clytia hemisphaerica | exon |
| TCONS_00010113-exon-sc0000102-1491911889:304347..305504 | TCONS_00010113-exon-sc0000102-1491911889:304347..305504 | Clytia hemisphaerica | exon |
| TCONS_00010113-exon-sc0000102-1491911889:303535..303626 | TCONS_00010113-exon-sc0000102-1491911889:303535..303626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:303535..305504 - |
Blast
The following BLAST results are available for this feature:
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