TCONS_00010123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010123
Unique NameTCONS_00010123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010123 ID=TCONS_00010123|Name=TCONS_00010123|organism=Clytia hemisphaerica|type=transcript|length=650bp
TGCTTTGGCTAAAGAGTTTCTGGTACAAATCAACAAATTATTTGGTAGAT
ATACTAAAATGAAACCTTATAATCTGGTGAAAGGAGCTATCATACAAACT
CTTAAAGTACTTCAGTCAGTGTTAATTCGGACAACCAGTTTAAGGCACGA
ATTTAAACACTCTACGGTGCAAATGACTTACGATATAAATAAATATGACG
AATACAAGGACACTGGTATTCAAGGTACAATATGTTATAAACATGCATGT
GATCCAGGTTGGGAACAAACTAGAGGTCAACTTTTAAAGAATCTTGCAAA
ATGGAGTTACGAATATGGCTACACATGCCAGCGTTGTGCTCCCAACTACA
TTAAACCTAAATACGGATTCCATTTATGCCAGAGCTGTCCAAAATATCAT
CAATCCAATGTTGACCATACTCGATGTGTTGACCCGTATACTGATATGTT
TTTAACCCAAGATCTTCTGTTCTATGCATCAATATCCTTACCTTGTTTCG
GCGTTAGTATCAATGCAATCACACTGATGACTTTCATATTGCACCGAAAA
ACACCAGTTGTTAAAAGCTCAGATTTCGTGTTAACTGTTCTACATTTGGT
AACATCTTTACTCATTAATGTAGGAATTATATGTCTCCGGTTTATGAAGC
Run BLAST on NCBI

protein sequence of TCONS_00010123-protein

>TCONS_00010123-protein ID=TCONS_00010123-protein|Name=TCONS_00010123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
ALAKEFLVQINKLFGRYTKMKPYNLVKGAIIQTLKVLQSVLIRTTSLRHE
FKHSTVQMTYDINKYDEYKDTGIQGTICYKHACDPGWEQTRGQLLKNLAK
WSYEYGYTCQRCAPNYIKPKYGFHLCQSCPKYHQSNVDHTRCVDPYTDMF
LTQDLLFYASISLPCFGVSINAITLMTFILHRKTPVVKSSDFVLTVLHLV
TSLLINVGIICLRFMK
Run BLAST on NCBI

transcript from alignment at sc0000102:105520..106169

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010123 ID=TCONS_00010123|Name=TCONS_00010123|organism=Clytia hemisphaerica|type=transcript|length=650bp|location=Sequence derived from alignment at sc0000102:105520..106169 (Clytia hemisphaerica)
GCTTCATAAACCGGAGACATATAATTCCTACATTAATGAGTAAAGATGTT
ACCAAATGTAGAACAGTTAACACGAAATCTGAGCTTTTAACAACTGGTGT
TTTTCGGTGCAATATGAAAGTCATCAGTGTGATTGCATTGATACTAACGC
CGAAACAAGGTAAGGATATTGATGCATAGAACAGAAGATCTTGGGTTAAA
AACATATCAGTATACGGGTCAACACATCGAGTATGGTCAACATTGGATTG
ATGATATTTTGGACAGCTCTGGCATAAATGGAATCCGTATTTAGGTTTAA
TGTAGTTGGGAGCACAACGCTGGCATGTGTAGCCATATTCGTAACTCCAT
TTTGCAAGATTCTTTAAAAGTTGACCTCTAGTTTGTTCCCAACCTGGATC
ACATGCATGTTTATAACATATTGTACCTTGAATACCAGTGTCCTTGTATT
CGTCATATTTATTTATATCGTAAGTCATTTGCACCGTAGAGTGTTTAAAT
TCGTGCCTTAAACTGGTTGTCCGAATTAACACTGACTGAAGTACTTTAAG
AGTTTGTATGATAGCTCCTTTCACCAGATTATAAGGTTTCATTTTAGTAT
ATCTACCAAATAATTTGTTGATTTGTACCAGAAACTCTTTAGCCAAAGCA

Coding sequence (CDS) from alignment at sc0000102:105520..106169

>TCONS_00010123 ID=TCONS_00010123|Name=TCONS_00010123|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000102:105520..106169 (Clytia hemisphaerica)
CTTCATAAACCGGAGACATATAATTCCTACATTAATGAGTAAAGATGTTA
CCAAATGTAGAACAGTTAACACGAAATCTGAGCTTTTAACAACTGGTGTT
TTTCGGTGCAATATGAAAGTCATCAGTGTGATTGCATTGATACTAACGCC
GAAACAAGGTAAGGATATTGATGCATAGAACAGAAGATCTTGGGTTAAAA
ACATATCAGTATACGGGTCAACACATCGAGTATGGTCAACATTGGATTGA
TGATATTTTGGACAGCTCTGGCATAAATGGAATCCGTATTTAGGTTTAAT
GTAGTTGGGAGCACAACGCTGGCATGTGTAGCCATATTCGTAACTCCATT
TTGCAAGATTCTTTAAAAGTTGACCTCTAGTTTGTTCCCAACCTGGATCA
CATGCATGTTTATAACATATTGTACCTTGAATACCAGTGTCCTTGTATTC
GTCATATTTATTTATATCGTAAGTCATTTGCACCGTAGAGTGTTTAAATT
CGTGCCTTAAACTGGTTGTCCGAATTAACACTGACTGAAGTACTTTAAGA
GTTTGTATGATAGCTCCTTTCACCAGATTATAAGGTTTCATTTTAGTATA
TCTACCAAATAATTTGTTGATTTGTACCAGAAACTCTTTAGCCAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005677XLOC_005677Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010123-proteinTCONS_00010123-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010123-exon-sc0000102-1491911889:105520..106169TCONS_00010123-exon-sc0000102-1491911889:105520..106169Clytia hemisphaericaexon
TCONS_00010123-exon-sc0000102-1510915933:105520..106169TCONS_00010123-exon-sc0000102-1510915933:105520..106169Clytia hemisphaericaexon
TCONS_00010123-exon-sc0000102-1575043694:105520..106169TCONS_00010123-exon-sc0000102-1575043694:105520..106169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:105520..106169 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160897	0.1569	0.182176	0.17823	0	0	1.65487	1.06512	0.203377	0.0839717	0.16301	0	0.321022	0.444513	0	0.098046	0	0.433301	0.598629	0.894889	0.311128	0.113818	0	0.08386	0	0.0770866	0	0	0.0892914	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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