TCONS_00073853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073853
Unique NameTCONS_00073853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073853 ID=TCONS_00073853|Name=TCONS_00073853|organism=Clytia hemisphaerica|type=transcript|length=1639bp
aaaaatgataacaaaactagtgacaaaaatagtaactaagtgtaacaaat
aagtattttcgGTTTTTGAcctatttcgaaaaatttttgtgtgtatttaa
tttcgcgattttgtatttttgaaaaatttaaacggtattgaatttcgcga
aatttggcCTAAagaatcgcgaaattaagtacccgcgaaatttGATACAC
GCGAAATGTAATACCAATAACGGATGGTTACTAACGGGAGTTTTGCCATT
TACTATCggtctttcttttgtttctctATTACAGATGTTTCAAAGCTCGA
CACCAGATGGTTTTACAAATCTTAGAAGAACATAATTACGGAAAATGTTT
GATCAAAAGACCACCACCTAGACCCAGTCCTTCTTCTACTGAAACACCGA
CATCTAGTCATGAACCGTCATCCAGTAACTGCGCTTCATTTATTGAAAAA
CCACTATCGAGTGCTGACACGCCAGGATGCAGTGGTTATAAACCGTCGTC
TGATAGAACGCCGTTGAACGAAACCCTTATGacaagtgaaaacaaaaaag
acgacaaaaataataacaattctGTGTCTCCGGAGAAACTTGCACCCATA
TCGAGCTCAAAATGTATTGATACACCGTTAACCAGCAAAGATCTATCGAT
ATCAaataaaatcgataaaaaaccTATTACAATCGATTTGACGGACGATG
AACCCAAAGCAGTAAAACATTTGTGCGATGGCAAAAACATATCTCCGCCA
AATGCACAAAAATTGTTATCGAAAGCTGATCTAATACTCGCCCAGTGTAA
ACAAGGGCTTACGGATTTACAAAAAGTGCCTGCGGACAATTCGAAGGCTA
AAGAGGAAACGAAACCGGTtgagatttcgaaaaataaaaaaactgaaagt
aAGGAGGAAGATTTATTTGGGGACGACGATGATGAGGATTTTTTCGAAAC
TGAAATGCTGAAACTGGACGAGAACAGTCTGATCGTTACTACACCCAAAA
AGAATTCGTTCTTTGATAACATTTGTCCTGATTTATTGAAAGCTTCACAA
AGTGCGAATACTTCTTCTAAAAGGAAAATGACAACGAGCACTCCCTTTGT
TGACTTTGGTACCAATTCTTCTAGACTTGGAAAAAGACAACTTTCTGATT
CGTCATGCGCAAGAAACGACCAGAAACGACCGAACTTGAATGACAGTCGG
GAAACACCGACGAATAATAATGATAGTAAGCCGAGAAACGAGAACTGGCC
GACTCAACAACGAGATTTTGGTAGTGGCAGTGACACGCCAAGGCCGAAAC
GTAGAAGATCTAAAAGGATTTCAAAGTAATATTTCATCGGTTTTTCCTTT
GCTTGTGGAAAATTATACAGAGTTATTTTGTTTATATGAGAGGTGTTTTA
TATTGTACATAATtggttttttagaaaaatggacaacaGTTAAATCTTTT
GGCCTTgattttgaaaagcttttttcaatgaaaatttcaagtgagGTAGT
CTATCCACAAACTTTTGGGCAAACCTTGACTTGAATTAAACCTAAGAATT
CGTACCGGGTGcctcagaaaaaactttggacgtttggcgagccactgagg
ccgaacaaagtcttgtttagactcaaaaccacttttatt
Run BLAST on NCBI

protein sequence of TCONS_00073853-protein

>TCONS_00073853-protein ID=TCONS_00073853-protein|Name=TCONS_00073853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MVLQILEEHNYGKCLIKRPPPRPSPSSTETPTSSHEPSSSNCASFIEKPL
SSADTPGCSGYKPSSDRTPLNETLMTSENKKDDKNNNNSVSPEKLAPISS
SKCIDTPLTSKDLSISNKIDKKPITIDLTDDEPKAVKHLCDGKNISPPNA
QKLLSKADLILAQCKQGLTDLQKVPADNSKAKEETKPVEISKNKKTESKE
EDLFGDDDDEDFFETEMLKLDENSLIVTTPKKNSFFDNICPDLLKASQSA
NTSSKRKMTTSTPFVDFGTNSSRLGKRQLSDSSCARNDQKRPNLNDSRET
PTNNNDSKPRNENWPTQQRDFGSGSDTPRPKRRRSKRISK
Run BLAST on NCBI

transcript from alignment at scaffold_99:17478..19116

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073853 ID=TCONS_00073853|Name=TCONS_00073853|organism=Clytia hemisphaerica|type=transcript|length=1639bp|location=Sequence derived from alignment at scaffold_99:17478..19116 (Clytia hemisphaerica)
aataaaagtggttttgagtctaaacaagactttgttcggcctcagtggct cgccaaacgtccaaagttttttctgaggCACCCGGTACGAATTCTTAGGT TTAATTCAAGTCAAGGTTTGCCCAAAAGTTTGTGGATAGACTACctcact tgaaattttcattgaaaaaagcttttcaaaatcAAGGCCAAAAGATTTAA CtgttgtccatttttctaaaaaaccaATTATGTACAATATAAAACACCTC TCATATAAACAAAATAACTCTGTATAATTTTCCACAAGCAAAGGAAAAAC CGATGAAATATTACTTTGAAATCCTTTTAGATCTTCTACGTTTCGGCCTT GGCGTGTCACTGCCACTACCAAAATCTCGTTGTTGAGTCGGCCAGTTCTC GTTTCTCGGCTTACTATCATTATTATTCGTCGGTGTTTCCCGACTGTCAT TCAAGTTCGGTCGTTTCTGGTCGTTTCTTGCGCATGACGAATCAGAAAGT TGTCTTTTTCCAAGTCTAGAAGAATTGGTACCAAAGTCAACAAAGGGAGT GCTCGTTGTCATTTTCCTTTTAGAAGAAGTATTCGCACTTTGTGAAGCTT TCAATAAATCAGGACAAATGTTATCAAAGAACGAATTCTTTTTGGGTGTA GTAACGATCAGACTGTTCTCGTCCAGTTTCAGCATTTCAGTTTCGAAAAA ATCCTCATCATCGTCGTCCCCAAATAAATCTTCCTCCTtactttcagttt ttttatttttcgaaatctcaACCGGTTTCGTTTCCTCTTTAGCCTTCGAA TTGTCCGCAGGCACTTTTTGTAAATCCGTAAGCCCTTGTTTACACTGGGC GAGTATTAGATCAGCTTTCGATAACAATTTTTGTGCATTTGGCGGAGATA TGTTTTTGCCATCGCACAAATGTTTTACTGCTTTGGGTTCATCGTCCGTC AAATCGATTGTAATAggttttttatcgattttattTGATATCGATAGATC TTTGCTGGTTAACGGTGTATCAATACATTTTGAGCTCGATATGGGTGCAA GTTTCTCCGGAGACACagaattgttattatttttgtcgtcttttttgttt tcacttgtCATAAGGGTTTCGTTCAACGGCGTTCTATCAGACGACGGTTT ATAACCACTGCATCCTGGCGTGTCAGCACTCGATAGTGGTTTTTCAATAA ATGAAGCGCAGTTACTGGATGACGGTTCATGACTAGATGTCGGTGTTTCA GTAGAAGAAGGACTGGGTCTAGGTGGTGGTCTTTTGATCAAACATTTTCC GTAATTATGTTCTTCTAAGATTTGTAAAACCATCTGGTGTCGAGCTTTGA AACATCTGTAATagagaaacaaaagaaagaccGATAGTAAATGGCAAAAC TCCCGTTAGTAACCATCCGTTATTGGTATTACATTTCGCGTGTATCaaat ttcgcgggtacttaatttcgcgattctTTAGgccaaatttcgcgaaattc aataccgtttaaatttttcaaaaatacaaaatcgcgaaattaaatacaca caaaaatttttcgaaataggTCAAAAACcgaaaatacttatttgttacac ttagttactatttttgtcactagttttgttatcattttt

Coding sequence (CDS) from alignment at scaffold_99:17478..19116

>TCONS_00073853 ID=TCONS_00073853|Name=TCONS_00073853|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_99:17478..19116 (Clytia hemisphaerica)
TTACTTTGAAATCCTTTTAGATCTTCTACGTTTCGGCCTTGGCGTGTCAC
TGCCACTACCAAAATCTCGTTGTTGAGTCGGCCAGTTCTCGTTTCTCGGC
TTACTATCATTATTATTCGTCGGTGTTTCCCGACTGTCATTCAAGTTCGG
TCGTTTCTGGTCGTTTCTTGCGCATGACGAATCAGAAAGTTGTCTTTTTC
CAAGTCTAGAAGAATTGGTACCAAAGTCAACAAAGGGAGTGCTCGTTGTC
ATTTTCCTTTTAGAAGAAGTATTCGCACTTTGTGAAGCTTTCAATAAATC
AGGACAAATGTTATCAAAGAACGAATTCTTTTTGGGTGTAGTAACGATCA
GACTGTTCTCGTCCAGTTTCAGCATTTCAGTTTCGAAAAAATCCTCATCA
TCGTCGTCCCCAAATAAATCTTCCTCCTtactttcagtttttttattttt
cgaaatctcaACCGGTTTCGTTTCCTCTTTAGCCTTCGAATTGTCCGCAG
GCACTTTTTGTAAATCCGTAAGCCCTTGTTTACACTGGGCGAGTATTAGA
TCAGCTTTCGATAACAATTTTTGTGCATTTGGCGGAGATATGTTTTTGCC
ATCGCACAAATGTTTTACTGCTTTGGGTTCATCGTCCGTCAAATCGATTG
TAATAggttttttatcgattttattTGATATCGATAGATCTTTGCTGGTT
AACGGTGTATCAATACATTTTGAGCTCGATATGGGTGCAAGTTTCTCCGG
AGACACagaattgttattatttttgtcgtcttttttgttttcacttgtCA
TAAGGGTTTCGTTCAACGGCGTTCTATCAGACGACGGTTTATAACCACTG
CATCCTGGCGTGTCAGCACTCGATAGTGGTTTTTCAATAAATGAAGCGCA
GTTACTGGATGACGGTTCATGACTAGATGTCGGTGTTTCAGTAGAAGAAG
GACTGGGTCTAGGTGGTGGTCTTTTGATCAAACATTTTCCGTAATTATGT
TCTTCTAAGATTTGTAAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045870XLOC_045870Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073853-proteinTCONS_00073853-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073853-exon-scaffold_99-1491911889:17478..19116TCONS_00073853-exon-scaffold_99-1491911889:17478..19116Clytia hemisphaericaexon
TCONS_00073853-exon-scaffold_99-1510915933:17478..19116TCONS_00073853-exon-scaffold_99-1510915933:17478..19116Clytia hemisphaericaexon
TCONS_00073853-exon-scaffold_99-1575043694:17478..19116TCONS_00073853-exon-scaffold_99-1575043694:17478..19116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_99supercontigscaffold_99:17478..19116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.9205 11.8918 16.9949 16.0003 30.7374 22.0116 15.9652 19.7653 8.04452 11.5572 7.89743 5.53174 6.29628 5.9685 6.8334 8.514 10.1089 8.73023 4.98083 6.23594 5.98241 5.41719 36.9792 28.9342 18.1574 19.265 9.30109 9.23707 31.1554 37.6563
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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