|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073853 ID=TCONS_00073853|Name=TCONS_00073853|organism=Clytia hemisphaerica|type=transcript|length=1639bp
aaaaatgataacaaaactagtgacaaaaatagtaactaagtgtaacaaat
aagtattttcgGTTTTTGAcctatttcgaaaaatttttgtgtgtatttaa
tttcgcgattttgtatttttgaaaaatttaaacggtattgaatttcgcga
aatttggcCTAAagaatcgcgaaattaagtacccgcgaaatttGATACAC
GCGAAATGTAATACCAATAACGGATGGTTACTAACGGGAGTTTTGCCATT
TACTATCggtctttcttttgtttctctATTACAGATGTTTCAAAGCTCGA
CACCAGATGGTTTTACAAATCTTAGAAGAACATAATTACGGAAAATGTTT
GATCAAAAGACCACCACCTAGACCCAGTCCTTCTTCTACTGAAACACCGA
CATCTAGTCATGAACCGTCATCCAGTAACTGCGCTTCATTTATTGAAAAA
CCACTATCGAGTGCTGACACGCCAGGATGCAGTGGTTATAAACCGTCGTC
TGATAGAACGCCGTTGAACGAAACCCTTATGacaagtgaaaacaaaaaag
acgacaaaaataataacaattctGTGTCTCCGGAGAAACTTGCACCCATA
TCGAGCTCAAAATGTATTGATACACCGTTAACCAGCAAAGATCTATCGAT
ATCAaataaaatcgataaaaaaccTATTACAATCGATTTGACGGACGATG
AACCCAAAGCAGTAAAACATTTGTGCGATGGCAAAAACATATCTCCGCCA
AATGCACAAAAATTGTTATCGAAAGCTGATCTAATACTCGCCCAGTGTAA
ACAAGGGCTTACGGATTTACAAAAAGTGCCTGCGGACAATTCGAAGGCTA
AAGAGGAAACGAAACCGGTtgagatttcgaaaaataaaaaaactgaaagt
aAGGAGGAAGATTTATTTGGGGACGACGATGATGAGGATTTTTTCGAAAC
TGAAATGCTGAAACTGGACGAGAACAGTCTGATCGTTACTACACCCAAAA
AGAATTCGTTCTTTGATAACATTTGTCCTGATTTATTGAAAGCTTCACAA
AGTGCGAATACTTCTTCTAAAAGGAAAATGACAACGAGCACTCCCTTTGT
TGACTTTGGTACCAATTCTTCTAGACTTGGAAAAAGACAACTTTCTGATT
CGTCATGCGCAAGAAACGACCAGAAACGACCGAACTTGAATGACAGTCGG
GAAACACCGACGAATAATAATGATAGTAAGCCGAGAAACGAGAACTGGCC
GACTCAACAACGAGATTTTGGTAGTGGCAGTGACACGCCAAGGCCGAAAC
GTAGAAGATCTAAAAGGATTTCAAAGTAATATTTCATCGGTTTTTCCTTT
GCTTGTGGAAAATTATACAGAGTTATTTTGTTTATATGAGAGGTGTTTTA
TATTGTACATAATtggttttttagaaaaatggacaacaGTTAAATCTTTT
GGCCTTgattttgaaaagcttttttcaatgaaaatttcaagtgagGTAGT
CTATCCACAAACTTTTGGGCAAACCTTGACTTGAATTAAACCTAAGAATT
CGTACCGGGTGcctcagaaaaaactttggacgtttggcgagccactgagg
ccgaacaaagtcttgtttagactcaaaaccacttttatt Run BLAST on NCBI protein sequence of TCONS_00073853-protein >TCONS_00073853-protein ID=TCONS_00073853-protein|Name=TCONS_00073853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MVLQILEEHNYGKCLIKRPPPRPSPSSTETPTSSHEPSSSNCASFIEKPL
SSADTPGCSGYKPSSDRTPLNETLMTSENKKDDKNNNNSVSPEKLAPISS
SKCIDTPLTSKDLSISNKIDKKPITIDLTDDEPKAVKHLCDGKNISPPNA
QKLLSKADLILAQCKQGLTDLQKVPADNSKAKEETKPVEISKNKKTESKE
EDLFGDDDDEDFFETEMLKLDENSLIVTTPKKNSFFDNICPDLLKASQSA
NTSSKRKMTTSTPFVDFGTNSSRLGKRQLSDSSCARNDQKRPNLNDSRET
PTNNNDSKPRNENWPTQQRDFGSGSDTPRPKRRRSKRISK Run BLAST on NCBI transcript from alignment at scaffold_99:17478..19116 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073853 ID=TCONS_00073853|Name=TCONS_00073853|organism=Clytia hemisphaerica|type=transcript|length=1639bp|location=Sequence derived from alignment at scaffold_99:17478..19116 (Clytia hemisphaerica)
aataaaagtggttttgagtctaaacaagactttgttcggcctcagtggct
cgccaaacgtccaaagttttttctgaggCACCCGGTACGAATTCTTAGGT
TTAATTCAAGTCAAGGTTTGCCCAAAAGTTTGTGGATAGACTACctcact
tgaaattttcattgaaaaaagcttttcaaaatcAAGGCCAAAAGATTTAA
CtgttgtccatttttctaaaaaaccaATTATGTACAATATAAAACACCTC
TCATATAAACAAAATAACTCTGTATAATTTTCCACAAGCAAAGGAAAAAC
CGATGAAATATTACTTTGAAATCCTTTTAGATCTTCTACGTTTCGGCCTT
GGCGTGTCACTGCCACTACCAAAATCTCGTTGTTGAGTCGGCCAGTTCTC
GTTTCTCGGCTTACTATCATTATTATTCGTCGGTGTTTCCCGACTGTCAT
TCAAGTTCGGTCGTTTCTGGTCGTTTCTTGCGCATGACGAATCAGAAAGT
TGTCTTTTTCCAAGTCTAGAAGAATTGGTACCAAAGTCAACAAAGGGAGT
GCTCGTTGTCATTTTCCTTTTAGAAGAAGTATTCGCACTTTGTGAAGCTT
TCAATAAATCAGGACAAATGTTATCAAAGAACGAATTCTTTTTGGGTGTA
GTAACGATCAGACTGTTCTCGTCCAGTTTCAGCATTTCAGTTTCGAAAAA
ATCCTCATCATCGTCGTCCCCAAATAAATCTTCCTCCTtactttcagttt
ttttatttttcgaaatctcaACCGGTTTCGTTTCCTCTTTAGCCTTCGAA
TTGTCCGCAGGCACTTTTTGTAAATCCGTAAGCCCTTGTTTACACTGGGC
GAGTATTAGATCAGCTTTCGATAACAATTTTTGTGCATTTGGCGGAGATA
TGTTTTTGCCATCGCACAAATGTTTTACTGCTTTGGGTTCATCGTCCGTC
AAATCGATTGTAATAggttttttatcgattttattTGATATCGATAGATC
TTTGCTGGTTAACGGTGTATCAATACATTTTGAGCTCGATATGGGTGCAA
GTTTCTCCGGAGACACagaattgttattatttttgtcgtcttttttgttt
tcacttgtCATAAGGGTTTCGTTCAACGGCGTTCTATCAGACGACGGTTT
ATAACCACTGCATCCTGGCGTGTCAGCACTCGATAGTGGTTTTTCAATAA
ATGAAGCGCAGTTACTGGATGACGGTTCATGACTAGATGTCGGTGTTTCA
GTAGAAGAAGGACTGGGTCTAGGTGGTGGTCTTTTGATCAAACATTTTCC
GTAATTATGTTCTTCTAAGATTTGTAAAACCATCTGGTGTCGAGCTTTGA
AACATCTGTAATagagaaacaaaagaaagaccGATAGTAAATGGCAAAAC
TCCCGTTAGTAACCATCCGTTATTGGTATTACATTTCGCGTGTATCaaat
ttcgcgggtacttaatttcgcgattctTTAGgccaaatttcgcgaaattc
aataccgtttaaatttttcaaaaatacaaaatcgcgaaattaaatacaca
caaaaatttttcgaaataggTCAAAAACcgaaaatacttatttgttacac
ttagttactatttttgtcactagttttgttatcattttt Coding sequence (CDS) from alignment at scaffold_99:17478..19116 >TCONS_00073853 ID=TCONS_00073853|Name=TCONS_00073853|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_99:17478..19116 (Clytia hemisphaerica)
TTACTTTGAAATCCTTTTAGATCTTCTACGTTTCGGCCTTGGCGTGTCAC
TGCCACTACCAAAATCTCGTTGTTGAGTCGGCCAGTTCTCGTTTCTCGGC
TTACTATCATTATTATTCGTCGGTGTTTCCCGACTGTCATTCAAGTTCGG
TCGTTTCTGGTCGTTTCTTGCGCATGACGAATCAGAAAGTTGTCTTTTTC
CAAGTCTAGAAGAATTGGTACCAAAGTCAACAAAGGGAGTGCTCGTTGTC
ATTTTCCTTTTAGAAGAAGTATTCGCACTTTGTGAAGCTTTCAATAAATC
AGGACAAATGTTATCAAAGAACGAATTCTTTTTGGGTGTAGTAACGATCA
GACTGTTCTCGTCCAGTTTCAGCATTTCAGTTTCGAAAAAATCCTCATCA
TCGTCGTCCCCAAATAAATCTTCCTCCTtactttcagtttttttattttt
cgaaatctcaACCGGTTTCGTTTCCTCTTTAGCCTTCGAATTGTCCGCAG
GCACTTTTTGTAAATCCGTAAGCCCTTGTTTACACTGGGCGAGTATTAGA
TCAGCTTTCGATAACAATTTTTGTGCATTTGGCGGAGATATGTTTTTGCC
ATCGCACAAATGTTTTACTGCTTTGGGTTCATCGTCCGTCAAATCGATTG
TAATAggttttttatcgattttattTGATATCGATAGATCTTTGCTGGTT
AACGGTGTATCAATACATTTTGAGCTCGATATGGGTGCAAGTTTCTCCGG
AGACACagaattgttattatttttgtcgtcttttttgttttcacttgtCA
TAAGGGTTTCGTTCAACGGCGTTCTATCAGACGACGGTTTATAACCACTG
CATCCTGGCGTGTCAGCACTCGATAGTGGTTTTTCAATAAATGAAGCGCA
GTTACTGGATGACGGTTCATGACTAGATGTCGGTGTTTCAGTAGAAGAAG
GACTGGGTCTAGGTGGTGGTCTTTTGATCAAACATTTTCCGTAATTATGT
TCTTCTAAGATTTGTAAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073853-exon-scaffold_99-1491911889:17478..19116 | TCONS_00073853-exon-scaffold_99-1491911889:17478..19116 | Clytia hemisphaerica | exon |
| TCONS_00073853-exon-scaffold_99-1510915933:17478..19116 | TCONS_00073853-exon-scaffold_99-1510915933:17478..19116 | Clytia hemisphaerica | exon |
| TCONS_00073853-exon-scaffold_99-1575043694:17478..19116 | TCONS_00073853-exon-scaffold_99-1575043694:17478..19116 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_99 | supercontig | scaffold_99:17478..19116 . |
Blast
The following BLAST results are available for this feature:
|
