TCONS_00073848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073848
Unique NameTCONS_00073848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073848 ID=TCONS_00073848|Name=TCONS_00073848|organism=Clytia hemisphaerica|type=transcript|length=1236bp
AAACAATTCACAGGACCAAACATTGATTTCAAACTAGATTGCATTTTACT
TATTtcactgaaaaagaaagaagaagaaaatcaagtaAGCtaggaaattt
gaaatttatggtTAGTTCTCATGAGTTTGACAATTGTTTTTAAAAGCGTT
TTAAAAAAGGGTTTAAGGAAACAAGGAAAAAAAGTTCCCgaaattggaat
ttttttcagccaatttgAGAAAACAGGAGGGATTGTGAGGAGGAGGCTTC
TTGGTTAGTCCTTCCCTTTTTAGTTCAACACAATATGCTTTGAATCTTAC
GTTTGAAGCCAGAAATTGTTTCTCGTTGATAATAGTAATGTCTTTTCGAA
GCTCGGTAAGTTTTCTCTGCAAACCAAATAGCCCGGGAACGACAAAAGTG
CAATTTATCTCTGATGATTTGAATTGGAGCCAATAAAATACAAGAGGTCA
TCCCTTTTTGCATTtggtttcttcatttttatcccccgactaaaaatttc
tcactcgtcactgagacaggggtgtagtaaATGACAACGAATTACAAATT
CATTATGTTTGAgcctagaaataaaaaaacactatttccaaaaattacaa
aacaacCAAACTTATAACCTAGAAGTAGAGTCAAATAAATGACAACaatt
acaaattaaaaaaacactatttccATCGATGATACTCAAGACAAACATta
caaaacaaccaaatttaTAAACCTAGAAATAGATGAAAAgttacaaatta
aaaaaaaactaaaaagtctTAGAGTACCTTTTGCTCACGAACATTCAAAT
TAAAATAGACCTTCAACAGACTTATTAGTAGGATCcttagcaaaatttaa
aaaagcaaGACACTCCAAAGGCCAATGTTTGAAATTGTGCGAGTCAGGAG
GTGGaatatagtaaatattttgctattttaaaaaactttttggcaATGCT
GGGGAGTAACTGATGACAATTCATAAGGATTACAAATATTTTCCGTTCTT
TAATTAAAGGTAACGACTCATTTAATGATCAACAGACAACACGTCTATCT
GGCGTCCATATTGCCCataaaacgttagatgaacgtttaaAAACAGTCAT
TACATTTAAAGCTTTcttgaacacccctgtctcagtgcctcGGTGTGAAT
ACTTCTACTCTCGGTTACCTAATAGCCGGTGGGTTTGAAATAAGCggagg
ggttggaaaaatctcaaaacttaataggCGGGGGGG
Run BLAST on NCBI

transcript from alignment at scaffold_98:249934..251169

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073848 ID=TCONS_00073848|Name=TCONS_00073848|organism=Clytia hemisphaerica|type=transcript|length=1236bp|location=Sequence derived from alignment at scaffold_98:249934..251169 (Clytia hemisphaerica)
CCCCCCCGcctattaagttttgagatttttccaacccctccGCTTATTTC AAACCCACCGGCTATTAGGTAACCGAGAGTAGAAGTATTCACACCgaggc actgagacaggggtgttcaagAAAGCTTTAAATGTAATGACTGTTTttaa acgttcatctaacgttttatGGGCAATATGGACGCCAGATAGACGTGTTG TCTGTTGATCATTAAATGAGTCGTTACCTTTAATTAAAGAACGGAAAATA TTTGTAATCCTTATGAATTGTCATCAGTTACTCCCCAGCATtgccaaaaa gttttttaaaatagcaaaatatttactatattCCACCTCCTGACTCGCAC AATTTCAAACATTGGCCTTTGGAGTGTCttgcttttttaaattttgctaa gGATCCTACTAATAAGTCTGTTGAAGGTCTATTTTAATTTGAATGTTCGT GAGCAAAAGGTACTCTAagactttttagtttttttttaatttgtaacTTT TCATCTATTTCTAGGTTTAtaaatttggttgttttgtaATGTTTGTCTTG AGTATCATCGATggaaatagtgtttttttaatttgtaattGTTGTCATTT ATTTGACTCTACTTCTAGGTTATAAGTTTGgttgttttgtaatttttgga aatagtgtttttttatttctaggcTCAAACATAATGAATTTGTAATTCGT TGTCATttactacacccctgtctcagtgacgagtgagaaatttttagtcg ggggataaaaatgaagaaaccaAATGCAAAAAGGGATGACCTCTTGTATT TTATTGGCTCCAATTCAAATCATCAGAGATAAATTGCACTTTTGTCGTTC CCGGGCTATTTGGTTTGCAGAGAAAACTTACCGAGCTTCGAAAAGACATT ACTATTATCAACGAGAAACAATTTCTGGCTTCAAACGTAAGATTCAAAGC ATATTGTGTTGAACTAAAAAGGGAAGGACTAACCAAGAAGCCTCCTCCTC ACAATCCCTCCTGTTTTCTcaaattggctgaaaaaaattccaatttcGGG AACTTTTTTTCCTTGTTTCCTTAAACCCTTTTTTAAAACGCTTTTAAAAA CAATTGTCAAACTCATGAGAACTAaccataaatttcaaatttcctaGCTt acttgattttcttcttctttctttttcagtgaAATAAGTAAAATGCAATC TAGTTTGAAATCAATGTTTGGTCCTGTGAATTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045866XLOC_045866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073848-exon-scaffold_98-1491911889:249934..251169TCONS_00073848-exon-scaffold_98-1491911889:249934..251169Clytia hemisphaericaexon
TCONS_00073848-exon-scaffold_98-1510915933:249934..251169TCONS_00073848-exon-scaffold_98-1510915933:249934..251169Clytia hemisphaericaexon
TCONS_00073848-exon-scaffold_98-1575043694:249934..251169TCONS_00073848-exon-scaffold_98-1575043694:249934..251169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:249934..251169 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103635 0.0673737 0.117341 0 0.745374 0.25769 0.488544 1.12263 0.320215 0.576927 0.27999 0.299088 0.344622 0.477191 0.255005 0.231558 0.129664 0.132902 0.110166 0.0768541 0.200401 0.0977484 0.198043 0 0.593431 1.15855 0.23684 0.505525 0.268396 0.429712
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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