TCONS_00073846 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073846
Unique NameTCONS_00073846
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073846 ID=TCONS_00073846|Name=TCONS_00073846|organism=Clytia hemisphaerica|type=transcript|length=1495bp
cccaaattttgcacaaagaagccCCTCATAAATATAAAAATGCGTGCCAA
AAATCAAGTCTGACACATGACGTAAGCAGGCTTACGGCGGAAAAACGCAA
GACTACGTAATACACCCCTGCCTAGGCTGGTTAAGGCAAAACTCGAAGTA
CTCGTAACTCACGAACCAAAGAGTTCCAGAACCCCAAATTTGGCACAAAA
CAGCCCAGCCCCTCATGGATGCGAACTTGCATGCAAAATTTGCAGCTTAT
ACGATAACGCCGTCGGAAGTTATTTTaagattccgtagattagtaatctg
TGAAGtgagattccgcaaattacaaatctacggaatctgctaATAACTCT
CGAAGCATTTGGTtttttcaaaccaaactttgcacGCATCTGGACATCCA
TGGTCTGGTCTGGTCTGTGCAAAATTTGAACGTTTGAATAGGCCGTTAAC
GGGAACTATGACGGAATTACGTAAAATCAAGTAAGGGACTTTATAAGCCC
TtgttgaaaaaactcaaaatctttGTATCTCCCGAAGATGCGTTTTAAGA
GCCCAAGATTTACACGAAGAAGCTCCTCGTAAATATGAAAAAGCGTGCCA
AAAATCAAGACTGACGGATGACGTAACCGAGACCTACAGCGGAAAAACCT
AAGACTACGTAATAAAATCTGCTAATAACTCTCGAAGGATTTGGTttttt
caaaccaaactttgcacACATCTGGACATCCATAAGACGCTGGTCTGTGC
CAAATTTGATCGTTTGAATAGGCCGTTAACGGGAGCTATGACGGAATAAT
GTAAAATCACGTAAGTGACTACattgtaaatttggtcgggaaaatgtgac
gaatttaaaattttggtcgggtaaaagtgacaaaaatgcctctaggtaGG
TTTTGGGTATAAAAATTTCGGGTAAAAGTTTCGGTCGTGTATTAAAAAAA
CCGGGTCAAAGTTTTGGTCCGGTGATAAAATGTCGAGTAAAAATTTCGTA
GCCCCCtaaaaaattttcgtcacttcccccgacatttttccCCGAATAGG
TACAACCTTTCTTATCAGACAATCTTCGAATGTGCATTTTGACACAAGTT
AACATCCTAAAAAATCGCATTTCGACGAGAAATGGCAAGCTACTTATTCA
AAGCAGATCATTTTACGATTAACCTTCTAAATTCTATCCAAAGAAGACTA
AATTTAAGATTGCTAGCTAGGAATTCCAGGCaccgtttatgagagtttct
tgttgactgtgagtttcaattttatcgaataaggggGCATAAAGAATAGT
AGAAAGTCGAAcgtagagagcgtcaactgtatttttttgaattttgttgt
ttaagcgattattcaatttttcttaaataaaggtaaaaagtttccaaaat
aGTAGAATGGTGACCTCTATGCTCTGTTACGCCTACTACACTACTTCTCT
TCTActactcttctgtgcttaaaATTGTAGGAGGGATCATTTTCC
Run BLAST on NCBI

transcript from alignment at scaffold_98:238962..240456

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073846 ID=TCONS_00073846|Name=TCONS_00073846|organism=Clytia hemisphaerica|type=transcript|length=1495bp|location=Sequence derived from alignment at scaffold_98:238962..240456 (Clytia hemisphaerica)
GGAAAATGATCCCTCCTACAATtttaagcacagaagagtagTAGAAGAGA AGTAGTGTAGTAGGCGTAACAGAGCATAGAGGTCACCATTCTACtatttt ggaaactttttacctttatttaagaaaaattgaataatcgcttaaacaac aaaattcaaaaaaatacagttgacgctctctacgTTCGACTTTCTACTAT TCTTTATGCccccttattcgataaaattgaaactcacagtcaacaagaaa ctctcataaacggtGCCTGGAATTCCTAGCTAGCAATCTTAAATTTAGTC TTCTTTGGATAGAATTTAGAAGGTTAATCGTAAAATGATCTGCTTTGAAT AAGTAGCTTGCCATTTCTCGTCGAAATGCGATTTTTTAGGATGTTAACTT GTGTCAAAATGCACATTCGAAGATTGTCTGATAAGAAAGGTTGTACCTAT TCGGggaaaaatgtcgggggaagtgacgaaaattttttaGGGGGCTACGA AATTTTTACTCGACATTTTATCACCGGACCAAAACTTTGACCCGGTTTTT TTAATACACGACCGAAACTTTTACCCGAAATTTTTATACCCAAAACCtac ctagaggcatttttgtcacttttacccgaccaaaattttaaattcgtcac attttcccgaccaaatttacaatGTAGTCACTTACGTGATTTTACATTAT TCCGTCATAGCTCCCGTTAACGGCCTATTCAAACGATCAAATTTGGCACA GACCAGCGTCTTATGGATGTCCAGATGTgtgcaaagtttggtttgaaaaa ACCAAATCCTTCGAGAGTTATTAGCAGATTTTATTACGTAGTCTTAGGTT TTTCCGCTGTAGGTCTCGGTTACGTCATCCGTCAGTCTTGATTTTTGGCA CGCTTTTTCATATTTACGAGGAGCTTCTTCGTGTAAATCTTGGGCTCTTA AAACGCATCTTCGGGAGATACaaagattttgagttttttcaacaAGGGCT TATAAAGTCCCTTACTTGATTTTACGTAATTCCGTCATAGTTCCCGTTAA CGGCCTATTCAAACGTTCAAATTTTGCACAGACCAGACCAGACCATGGAT GTCCAGATGCgtgcaaagtttggtttgaaaaaACCAAATGCTTCGAGAGT TATtagcagattccgtagatttgtaatttgcggaatctcaCTTCAcagat tactaatctacggaatcttAAAATAACTTCCGACGGCGTTATCGTATAAG CTGCAAATTTTGCATGCAAGTTCGCATCCATGAGGGGCTGGGCTGTTTTG TGCCAAATTTGGGGTTCTGGAACTCTTTGGTTCGTGAGTTACGAGTACTT CGAGTTTTGCCTTAACCAGCCTAGGCAGGGGTGTATTACGTAGTCTTGCG TTTTTCCGCCGTAAGCCTGCTTACGTCATGTGTCAGACTTGATTTTTGGC ACGCATTTTTATATTTATGAGGggcttctttgtgcaaaatttggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045864XLOC_045864Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073846-exon-scaffold_98-1491911889:238962..240456TCONS_00073846-exon-scaffold_98-1491911889:238962..240456Clytia hemisphaericaexon
TCONS_00073846-exon-scaffold_98-1510915933:238962..240456TCONS_00073846-exon-scaffold_98-1510915933:238962..240456Clytia hemisphaericaexon
TCONS_00073846-exon-scaffold_98-1575043694:238962..240456TCONS_00073846-exon-scaffold_98-1575043694:238962..240456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:238962..240456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0657921 0.167277 0.0521342 0.319663 0.0283355 0 0 0.112715 0.141904 0 0.0191031 0.0423639 0 0.0937387 0.263937 0.0794127 0.0396711 0 0 0.0444931 0.359755 0.53969 0.0378282 0.0625594 0 0.0605194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073846 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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