TCONS_00073841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073841
Unique NameTCONS_00073841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073841 ID=TCONS_00073841|Name=TCONS_00073841|organism=Clytia hemisphaerica|type=transcript|length=299bp
CATTGTTTgttcttcaaagtttttcgGTGTCAAACTAAGTTCATCGGAAA
CGTTGAGTTTGAGAATCAAGTCTTTGGTTTCACCTAGCTCAAGCTTCCTT
AGTTGAGAAGAATGACATTAAAGAGCTAAAAATGTCATCAGTCAGTCCaa
catttccaaattaaaaCAGTTTTCATAGTCAAAAACACTGCTAACAGCCT
ccaaatttgtgtgtttttaaaaaatattacttttttggttaccatcttta
attacgtcatattaggaaatcccgcggaaaaaaggcggtattgacttag
Run BLAST on NCBI

transcript from alignment at scaffold_98:168900..169198

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073841 ID=TCONS_00073841|Name=TCONS_00073841|organism=Clytia hemisphaerica|type=transcript|length=299bp|location=Sequence derived from alignment at scaffold_98:168900..169198 (Clytia hemisphaerica)
ctaagtcaataccgccttttttccgcgggatttcctaatatgacgtaatt
aaagatggtaaccaaaaaagtaatattttttaaaaacacacaaatttggA
GGCTGTTAGCAGTGTTTTTGACTATGAAAACTGttttaatttggaaatgt
tGGACTGACTGATGACATTTTTAGCTCTTTAATGTCATTCTTCTCAACTA
AGGAAGCTTGAGCTAGGTGAAACCAAAGACTTGATTCTCAAACTCAACGT
TTCCGATGAACTTAGTTTGACACcgaaaaactttgaagaacAAACAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045859XLOC_045859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073841-exon-scaffold_98-1491911889:168900..169198TCONS_00073841-exon-scaffold_98-1491911889:168900..169198Clytia hemisphaericaexon
TCONS_00073841-exon-scaffold_98-1510915933:168900..169198TCONS_00073841-exon-scaffold_98-1510915933:168900..169198Clytia hemisphaericaexon
TCONS_00073841-exon-scaffold_98-1575043694:168900..169198TCONS_00073841-exon-scaffold_98-1575043694:168900..169198Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_98supercontigscaffold_98:168900..169198 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.487103	0.0509942	0	0.981216	3.01328	0.238021	0.47409	1.50516	1.38409	0.530805	0.398755	0.947443	1.86881	0	0.351827	1.96589	0.00272563	2.28033	2.06783	2.95346	2.4264	3.74101	1.72378	0	0.935747	2.65667	4.856	5.47116	1.08749	1.10526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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